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Gene ST8SIA1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
119 supporting clones for gene ST8SIA1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BQ670341 epidermoid carcinoma, cell line, salivary gland ST8SIA1.a 1 to 694 697 to 1   tiling clone, Submitted on the opposite strand 697/1007
(69 %)
21 diff
(98.0 %id)
BQ673261 epidermoid carcinoma, cell line, salivary gland ST8SIA1.a 213 to 694 484 to 1   tiling clone, Submitted on the opposite strand 484/1033
(46 %)
17 diff
(98.4 %id)
NM_003034.3   ST8SIA1.a 369 to 10081 1 to 9713 exact RefSeq, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 9713/9713
(100 %)
0 diff
(100 %id)
X77922   ST8SIA1.a 369 to 2472 1 to 2104 exact AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 2104/2104
(100 %)
1 diff
(100.0 %id)
AK315340 stomach ST8SIA1.a 394 to 1921 1 to 1528 exact     1528/1528
(100 %)
1 diff
(100.0 %id)
DA968096 stomach ST8SIA1.a 395 to 966 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
BI669679 brain, hypothalamus ST8SIA1.a 398 to 1149 1 to 751       751/754
(99 %)
14 diff
(98.2 %id)
TI_44344212   ST8SIA1.a 403 to 1149 89 to 834       746/837
(89 %)
9 diff
(99.0 %id)
BI550334 brain, hippocampus ST8SIA1.a 435 to 1150 1 to 722   available from MGC,   721/722
(99 %)
25 diff
(96.6 %id)
BI550329 brain, hippocampus ST8SIA1.a 435 to 1229 1 to 815       815/830
(98 %)
13 diff
(98.5 %id)
BC031081 Brain, hippocampus ST8SIA1.a 440 to 2472 1 to 2032 A20G W21G K22S F23S P24R ... available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 2032/2032
(100 %)
2 diff
(100.0 %id)
BC117285 Colon, PCR rescued clones ST8SIA1.a 450 to 2417 1 to 1968 exact tiling clone,   1968/1968
(100 %)
0 diff
(100 %id)
BC126162 Colon, PCR rescued clones ST8SIA1.a 450 to 2417 1 to 1968 exact     1968/1968
(100 %)
0 diff
(100 %id)
TI_1520874201   ST8SIA1.a 450 to 1629 49 to 1225       1177/1256
(93 %)
49 diff
(96.1 %id)
TI_1520876439   ST8SIA1.a 450 to 809 240 to 599     Submitted on the opposite strand 360/599
(60 %)
6 diff
(99.0 %id)
TI_1520877475   ST8SIA1.a 450 to 768 241 to 560     Submitted on the opposite strand 320/560
(57 %)
6 diff
(99.0 %id)
TI_1320130841   ST8SIA1.a 450 to 1441 58 to 1052     Submitted on the opposite strand 995/1259
(79 %)
13 diff
(99.0 %id)
DA131911 alzheimer cortex ST8SIA1.a 460 to 1019 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DR006077 Prostate ST8SIA1.a 563 to 1031 1 to 469       469/470
(99 %)
2 diff
(99.6 %id)
AK290941   ST8SIA1.a 728 to 2256 1 to 1529 exact     1529/1529
(100 %)
2 diff
(99.9 %id)
DA684330   ST8SIA1.a 729 to 1274 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
D26360   ST8SIA1.a 748 to 2451 1 to 1704 exact     1704/1704
(100 %)
1 diff
(100.0 %id)
AU126278   ST8SIA1.a 752 to 1436 2 to 688   capped   687/734
(93 %)
7 diff
(99.1 %id)
L32867   ST8SIA1.a 784 to 2433 1 to 1650 exact     1650/1650
(100 %)
1 diff
(100.0 %id)
L43494   ST8SIA1.a 840 to 2469 1 to 1630 exact     1630/1630
(100 %)
1 diff
(100.0 %id)
EL737116 mixed ST8SIA1.a 851 to 1086 1 to 236       236/415
(56 %)
2 diff
(99.6 %id)
BF572619 melanotic melanoma, high MDR, skin ST8SIA1.a 1022 to 1730 1 to 686       686/855
(80 %)
36 diff
(95.8 %id)
W25251.
matches multiple genes
lung ST8SIA1.a 1160 to 1542 18 to 400     also hits gene PSKH1 383/414
(92 %)
12 diff
(97.2 %id)
AA169311   ST8SIA1.a 1235 to 1440 54 to 258       205/258
(79 %)
6 diff
(97.7 %id)
DA785868 brain ST8SIA1.a 1241 to 1819 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
TI_1320134355   ST8SIA1.a 1242 to 2326 1082 to 3       1080/1286
(83 %)
5 diff
(99.7 %id)
AU132392   ST8SIA1.a 1259 to 2093 2 to 836   capped   835/835
(100 %)
4 diff
(99.6 %id)
BE818019 breast_normal ST8SIA1.a 1284 to 1597 332 to 20       313/341
(91 %)
4 diff
(98.9 %id)
DA490917 brain ST8SIA1.a 1305 to 1875 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
TI_1520875953   ST8SIA1.a 1316 to 2108 12 to 804       793/804
(98 %)
14 diff
(98.3 %id)
BX104473 parathyroid gland, parathyroid tumor ST8SIA1.a 1388 to 2167 1 to 780       780/780
(100 %)
0 diff
(100 %id)
W37412 parathyroid gland, parathyroid tumor ST8SIA1.a 1388 to 1935 1 to 560     Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 560/561
(99 %)
19 diff
(96.7 %id)
CN272048 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells ST8SIA1.a 1434 to 1965 13 to 544       532/544
(97 %)
6 diff
(98.9 %id)
AW895813 nervous_normal ST8SIA1.a 1462 to 1822 1 to 361       361/361
(100 %)
7 diff
(98.1 %id)
BE699003 nervous_normal ST8SIA1.a 1469 to 1839 1 to 370       370/370
(100 %)
4 diff
(99.0 %id)
AW895745 nervous_normal ST8SIA1.a 1477 to 1841 382 to 17       366/382
(95 %)
0 diff
(100 %id)
BE699005 nervous_normal ST8SIA1.a 1477 to 1830 361 to 9       353/361
(97 %)
0 diff
(100 %id)
AW895800 nervous_normal ST8SIA1.a 1480 to 1836 362 to 6       357/362
(98 %)
0 diff
(100 %id)
H96923 pineal gland ST8SIA1.a 1492 to 1913 1 to 436       436/437
(99 %)
20 diff
(95.5 %id)
AW895860 nervous_normal ST8SIA1.a 1508 to 1843 359 to 25       335/359
(93 %)
0 diff
(100 %id)
BQ425160 melanotic melanoma, skin ST8SIA1.a 1516 to 2344 1 to 836       836/837
(99 %)
8 diff
(99.1 %id)
N84978   ST8SIA1.a 1534 to 1772 1 to 236       236/236
(100 %)
6 diff
(97.5 %id)
BE618633 eye, retinoblastoma ST8SIA1.a 1599 to 2412 811 to 1       811/945
(85 %)
28 diff
(97.1 %id)
TI_154054556   ST8SIA1.a 1629 to 2463 911 to 90   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 822/958
(85 %)
18 diff
(98.2 %id)
AA081743   ST8SIA1.a 1701 to 2224 1 to 517       517/517
(100 %)
12 diff
(97.7 %id)
AI291051 carcinoid, lung ST8SIA1.a 1733 to 2474 744 to 1       744/747
(99 %)
11 diff
(98.6 %id)
CA418404 Chondrosarcoma Grade II, Left Pelvis ST8SIA1.a 1750 to 2463 732 to 19   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 714/714
(100 %)
0 diff
(100 %id)
FN053745 breast carcinoma ST8SIA1.a 1825 to 1914 90 to 1     Submitted on the opposite strand 90/92
(97 %)
0 diff
(100 %id)
AA169183   ST8SIA1.a 1948 to 2468 522 to 1       522/524
(99 %)
1 diff
(99.9 %id)
W37413 parathyroid gland, parathyroid tumor ST8SIA1.a 1956 to 2469 535 to 15   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 521/530
(98 %)
11 diff
(98.0 %id)
AA634346   ST8SIA1.a 2021 to 2464 447 to 4       444/447
(99 %)
0 diff
(100 %id)
N49251 multiple sclerosis lesions ST8SIA1.a 2029 to 2463 440 to 1       440/441
(99 %)
9 diff
(98.0 %id)
N95342 lung ST8SIA1.a 2044 to 2463 420 to 1       420/420
(100 %)
1 diff
(99.8 %id)
AA757329 pooled ST8SIA1.a 2061 to 2469 413 to 5       409/413
(99 %)
0 diff
(100 %id)
AI051537   ST8SIA1.a 2098 to 2464 370 to 4       367/370
(99 %)
0 diff
(100 %id)
AI028044 parathyroid gland, parathyroid tumor ST8SIA1.a 2120 to 2469 364 to 15   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 350/350
(100 %)
6 diff
(98.3 %id)
AA844562 parathyroid gland, parathyroid tumor ST8SIA1.a 2188 to 2463 302 to 27   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 276/276
(100 %)
1 diff
(99.7 %id)
FN158016 breast carcinoma ST8SIA1.a 2305 to 2451 1 to 145       145/145
(100 %)
3 diff
(98.0 %id)
AF088002.
matches multiple genes
multiple sclerosis lesions ST8SIA1.a 2337 to 2816 1 to 479   tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base), also hits gene gorchar 479/479
(100 %)
1 diff
(99.8 %id)
N46525.
matches multiple genes
multiple sclerosis lesions ST8SIA1.a 2342 to 2578 1 to 236     Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base), also hits gene gorchar 236/236
(100 %)
3 diff
(98.8 %id)
BF979097 melanotic melanoma, high MDR, skin ST8SIA1.a 3144 to 3814 1 to 661   tiling clone,   661/678
(97 %)
15 diff
(97.8 %id)
CD357330 Blood vessels - aorta, basilar and artery ST8SIA1.a 3180 to 3896 1 to 731   tiling clone,   731/825
(88 %)
25 diff
(97.0 %id)
CV414830 breast_normal ST8SIA1.a 3310 to 3786 10 to 486   tiling clone,   477/486
(98 %)
6 diff
(98.8 %id)
DB369391   ST8SIA1.a 3769 to 4299 531 to 1   tiling clone,   531/531
(100 %)
12 diff
(97.8 %id)
CB177261 Pancreas, Purified pancreatic islet ST8SIA1.a 3811 to 4273 1 to 463   fully sequenced,   463/463
(100 %)
4 diff
(99.2 %id)
BU076483 Pancreas, Purified pancreatic islet ST8SIA1.a 3814 to 4286 11 to 483   tiling clone, fully sequenced,   473/483
(97 %)
6 diff
(98.8 %id)
CA778369 Pancreas, Purified pancreatic islet ST8SIA1.a 3819 to 4277 15 to 473   fully sequenced,   459/473
(97 %)
6 diff
(98.8 %id)
CB068363 Pancreas, Purified pancreatic islet ST8SIA1.a 3857 to 4153 297 to 1   fully sequenced,   297/297
(100 %)
0 diff
(100 %id)
CA778071 Pancreas, Purified pancreatic islet ST8SIA1.a 3886 to 4166 281 to 1   fully sequenced,   281/281
(100 %)
1 diff
(99.7 %id)
BU076232 Pancreas, Purified pancreatic islet ST8SIA1.a 3899 to 4153 255 to 1   fully sequenced,   255/255
(100 %)
0 diff
(100 %id)
DA726877   ST8SIA1.a 4356 to 4841 2 to 489   tiling clone, capped   488/488
(100 %)
2 diff
(99.6 %id)
DA212649 brain ST8SIA1.a 5024 to 5566 2 to 544   tiling clone, capped   543/543
(100 %)
1 diff
(99.9 %id)
DA215495 brain ST8SIA1.a 6187 to 6711 2 to 528   tiling clone, capped   527/527
(100 %)
2 diff
(99.7 %id)
DA100333 cerebellum ST8SIA1.a 9207 to 9654 2 to 449   tiling clone, fully sequenced, capped   448/448
(100 %)
1 diff
(99.8 %id)
DB304498 brain ST8SIA1.a 9534 to 10081 548 to 1   tiling clone,   548/548
(100 %)
0 diff
(100 %id)
DB304679 brain ST8SIA1.a 9536 to 10081 546 to 1       546/546
(100 %)
0 diff
(100 %id)
DB299069 cerebellum ST8SIA1.a 9624 to 10081 461 to 1   fully sequenced,   461/461
(100 %)
0 diff
(100 %id)
BM929838 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid ST8SIA1.a 9686 to 10081 1 to 396   AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 396/396
(100 %)
0 diff
(100 %id)
AW020700 cochlea, ear ST8SIA1.a 9693 to 10060 1 to 368   fully sequenced, Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 368/368
(100 %)
4 diff
(99.0 %id)
BI491674 cochlea, ear ST8SIA1.a 9738 to 10087 360 to 12   fully sequenced, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 349/349
(100 %)
8 diff
(97.8 %id)
CB410969 cochlea, ear ST8SIA1.a 9836 to 10057 1 to 221       221/221
(100 %)
1 diff
(99.6 %id)
EU041716   ST8SIA1.b 1 to 1994 1 to 1994 exact tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 1994/1994
(100 %)
0 diff
(100 %id)
AY569975   ST8SIA1.b 477 to 1453 1 to 977 I69T     977/977
(100 %)
1 diff
(99.9 %id)
AK297310 brain ST8SIA1.b 518 to 1853 1 to 1336 A139T     1336/1336
(100 %)
2 diff
(99.9 %id)
DC350934 brain ST8SIA1.b 518 to 1091 1 to 574       574/574
(100 %)
1 diff
(99.9 %id)
BU959056 mixed (pool of 40 RNAs) ST8SIA1.c -11 to 723 1 to 742   tiling clone,   742/757
(98 %)
12 diff
(98.5 %id)
BU176840 eye, retinoblastoma ST8SIA1.c 7 to 867 1 to 868 G114R L115T L117S V118G S119E ... tiling clone,   868/870
(99 %)
10 diff
(98.9 %id)
BE779018 eye, retinoblastoma ST8SIA1.c 20 to 736 1 to 724       724/867
(83 %)
29 diff
(96.7 %id)
BE618085 eye, retinoblastoma ST8SIA1.c 24 to 718 1 to 700       700/700
(100 %)
17 diff
(97.6 %id)
DA720173   ST8SIA1.d 1 to 571 2 to 572 exact tiling clone, capped   571/571
(100 %)
1 diff
(99.9 %id)
AI765214 2 pooled tumors (clear cell type), Kidney ST8SIA1.e 1 to 687 678 to 3 P3A G5E S7V A8P L9S ... tiling clone,   676/685
(98 %)
16 diff
(97.7 %id)
BC046158 Skin, melanotic melanoma. ST8SIA1.f 1 to 1030 1 to 1030 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 1030/1030
(100 %)
0 diff
(100 %id)
BM459038 melanotic melanoma, skin ST8SIA1.f 2 to 972 1 to 980 exact available from MGC,   980/1054
(92 %)
15 diff
(98.6 %id)
BC039019 Skin, melanotic melanoma. ST8SIA1.g 1 to 1920 47 to 1965 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 1919/1919
(100 %)
4 diff
(99.8 %id)
BX340093 Placenta Cot 25-normalized ST8SIA1.g 957 to 1863 920 to 18   tiling clone,   903/954
(94 %)
0 diff
(100 %id)
DB515665 testis ST8SIA1.g 1500 to 1920 1 to 421   tiling clone, Submitted on the opposite strand 421/421
(100 %)
1 diff
(99.8 %id)
AW367898 head_neck ST8SIA1.h 1 to 558 1 to 554 S2T S8N T9L Y10L F13P ... tiling clone,   554/554
(100 %)
6 diff
(99.0 %id)
BI460219 testis ST8SIA1.i 1 to 481 6 to 487 G75R Q76A K77E L78T P80I ... tiling clone,   485/487
(99 %)
8 diff
(98.4 %id)
DB451182.
matches multiple genes
testis ST8SIA1.i 1 to 488 1 to 488 P80S tiling clone, also hits gene shucheyby 488/488
(100 %)
4 diff
(99.2 %id)
CR623725 Placenta Cot 25-normalized ST8SIA1.j 1 to 2345 1 to 2345 exact tiling clone,   2345/2345
(100 %)
0 diff
(100 %id)
BX340094 Placenta Cot 25-normalized ST8SIA1.j 16 to 1000 14 to 999       986/1064
(92 %)
22 diff
(98.0 %id)
BG951980 colon ST8SIA1.j 483 to 931 1 to 448       448/448
(100 %)
5 diff
(98.9 %id)
BX325998 Placenta Cot 25-normalized ST8SIA1.j 695 to 1326 14 to 647       634/903
(70 %)
34 diff
(96.3 %id)
BX349049 Placenta Cot 25-normalized ST8SIA1.j 725 to 1632 1 to 915       915/917
(99 %)
44 diff
(95.3 %id)
BM724140 eye, fetal eye ST8SIA1.j 804 to 1492 1 to 688       688/688
(100 %)
6 diff
(99.2 %id)
BF446861 fibrotheoma, ovary ST8SIA1.j 1035 to 1439 1 to 405     Submitted on the opposite strand 405/405
(100 %)
11 diff
(97.3 %id)
DA518794 brain ST8SIA1.k 1 to 542 2 to 542   tiling clone, to resequence, capped   541/541
(100 %)
1 diff
(99.9 %id)
DA502019 brain ST8SIA1.k 4 to 555 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
BM451235 eye, retinoblastoma ST8SIA1.k 185 to 1067 1 to 883 T71X tiling clone,   883/898
(98 %)
10 diff
(98.9 %id)
DA504298 brain ST8SIA1.k 472 to 1015 2 to 545 N12D tiling clone, capped   544/544
(100 %)
2 diff
(99.7 %id)
DB316012 brain ST8SIA1.k 1786 to 2330 545 to 1   tiling clone,   545/545
(100 %)
0 diff
(100 %id)
DB317061 brain ST8SIA1.k 1801 to 2330 531 to 1   to resequence,   531/531
(100 %)
1 diff
(99.9 %id)
BF976867 melanotic melanoma, high MDR, skin ST8SIA1.l-u 1 to 642 1 to 644 P13S N14Q S15F C16V I17H ... tiling clone,   644/894
(72 %)
19 diff
(97.9 %id)
CA411950 Chondrosarcoma Grade II, Left Pelvis ST8SIA1.l-u 106 to 826 740 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 722/722
(100 %)
3 diff
(99.6 %id)
BX092630 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus ST8SIA1.m-u 1 to 595 1 to 595 R5X D6X K7* tiling clone, AAA   595/595
(100 %)
2 diff
(99.7 %id)
AI090916 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus ST8SIA1.m-u 217 to 595 378 to 1   tiling clone,   378/378
(100 %)
1 diff
(99.8 %id)
DA508937 brain ST8SIA1.n 1 to 564 2 to 567 F89L S90L V91C N92E M93Y ... tiling clone, capped   566/566
(100 %)
4 diff
(99.3 %id)
DB234168 trachea ST8SIA1.o-u 1 to 561 2 to 562 exact tiling clone, capped   561/561
(100 %)
0 diff
(100 %id)
AI480315 pooled ST8SIA1.p 1 to 518 556 to 31 exact tiling clone, AAA   526/543
(96 %)
0 diff
(100 %id)
BX106129 heart ST8SIA1.q 1 to 466 1 to 465 exact     465/733
(63 %)
3 diff
(99.6 %id)
AA010456 heart ST8SIA1.q 1 to 321 1 to 323 G6R G7W N8K R9* tiling clone,   323/406
(79 %)
4 diff
(99.1 %id)
AI804052 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus ST8SIA1.q 31 to 476 446 to 1 exact tiling clone,   446/446
(100 %)
3 diff
(99.4 %id)
BG209887   ST8SIA1.q 73 to 472 6 to 400 exact tiling clone, AAA Possibly primed on the genome, locally A rich (13/15 A in genome downstream of last aligned base) 395/400
(98 %)
7 diff
(98.3 %id)
BF690911 melanotic melanoma, high MDR, skin ST8SIA1.r 1 to 369 1 to 369 V34X tiling clone,   369/370
(99 %)
2 diff
(99.5 %id)
AI539389 pooled ST8SIA1.s 1 to 297 304 to 8 exact tiling clone,   297/304
(97 %)
0 diff
(100 %id)
BU608945 Human Lung Epithelial cells, lung ST8SIA1.t-u 1 to 275 290 to 11 V7F D8C M9R G10H P11G ... tiling clone,   280/314
(89 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l-u, .m-u, .n, .o-u, .p, .q, .r, .s, .t-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC