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Gene ST6GALNAC5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
155 supporting clones for gene ST6GALNAC5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC382850 Prostate .a 1 to 553 1 to 555   tiling clone,   555/555
(100 %)
2 diff
(99.7 %id)
DC358960 lung .a 108 to 636 1 to 529       529/565
(93 %)
1 diff
(99.9 %id)
DC313560 amygdala .a 110 to 636 1 to 527       527/572
(92 %)
1 diff
(99.9 %id)
DC365456 ovary .a 110 to 681 1 to 572       572/572
(100 %)
0 diff
(100 %id)
AK056241   .a 141 to 2230 1 to 2090 exact tiling clone, available from FLJ,   2090/2090
(100 %)
0 diff
(100 %id)
DA121556 cerebellum .a 142 to 681 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA702301   .a 142 to 617 2 to 477   capped   476/476
(100 %)
0 diff
(100 %id)
DA196397 amygdala .a 146 to 636 2 to 498   capped   497/561
(88 %)
5 diff
(99.2 %id)
DA702496   .a 146 to 617 2 to 474   capped   473/473
(100 %)
1 diff
(99.8 %id)
DA618603   .a 148 to 617 2 to 472   capped   471/471
(100 %)
3 diff
(99.4 %id)
BP219876 caudate nucleus .a 149 to 729 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA151446 amygdala .a 150 to 617 2 to 472   capped   471/471
(100 %)
3 diff
(99.4 %id)
DA166913 amygdala .a 150 to 637 2 to 489   capped   488/575
(84 %)
2 diff
(99.7 %id)
DA192434 amygdala .a 150 to 636 2 to 493   capped   490/593
(82 %)
5 diff
(99.2 %id)
DA310719 hippocampus .a 150 to 636 2 to 488   capped   487/533
(91 %)
1 diff
(99.9 %id)
DA328774 hippocampus .a 150 to 655 2 to 507   capped   506/506
(100 %)
0 diff
(100 %id)
DA691076   .a 150 to 727 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
CD557398 testis .a 164 to 637 26 to 500       475/933
(50 %)
2 diff
(99.8 %id)
DA314420 hippocampus .a 175 to 744 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA218346 brain .a 176 to 721 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA243862 brain .a 176 to 778 2 to 604   capped   603/603
(100 %)
0 diff
(100 %id)
DC351649 brain .a 178 to 577 1 to 400       400/565
(70 %)
5 diff
(99.2 %id)
DA294052 hippocampus .a 179 to 756 2 to 579   capped   578/578
(100 %)
3 diff
(99.5 %id)
DA308394 hippocampus .a 179 to 741 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA614867   .a 179 to 748 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA679440   .a 179 to 636 2 to 462   capped   459/569
(80 %)
2 diff
(99.7 %id)
DC334435 hippocampus .a 180 to 636 1 to 458       458/508
(90 %)
4 diff
(99.3 %id)
BP218346 caudate nucleus .a 180 to 754 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
BP218454 caudate nucleus .a 180 to 754 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
DB463696 hippocampus .a 180 to 575 1 to 401       401/402
(99 %)
56 diff
(86.1 %id)
DA687112   .a 180 to 717 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA909248   .a 180 to 769 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
DA912929   .a 180 to 757 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA161224 amygdala .a 181 to 754 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA170933 amygdala .a 181 to 740 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA172320 amygdala .a 181 to 737 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA172607 amygdala .a 181 to 761 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA182427 amygdala .a 181 to 745 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA218469 brain .a 181 to 681 2 to 503   capped   502/502
(100 %)
2 diff
(99.7 %id)
DA300113 hippocampus .a 181 to 762 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA303787 hippocampus .a 181 to 735 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA304289 hippocampus .a 181 to 681 2 to 502   capped   501/501
(100 %)
0 diff
(100 %id)
DA340693 substantia nigra .a 181 to 654 2 to 476   capped   475/475
(100 %)
1 diff
(99.8 %id)
DA517724 brain .a 181 to 724 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DA582312 lung .a 181 to 734 2 to 556   capped   555/555
(100 %)
4 diff
(99.3 %id)
DA583527 lung .a 181 to 729 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA613185   .a 181 to 754 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA697286   .a 181 to 739 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA706220   .a 181 to 764 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA748322   .a 181 to 747 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA913805   .a 181 to 745 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA942153 Spleen .a 181 to 768 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DB216822 trachea .a 181 to 636 2 to 458   capped   457/500
(91 %)
2 diff
(99.6 %id)
DA236969 brain .a 182 to 751 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA699955   .a 182 to 679 2 to 499   capped   498/498
(100 %)
1 diff
(99.8 %id)
DA678340   .a 184 to 923 2 to 742   capped   741/859
(86 %)
2 diff
(99.8 %id)
DA145358 amygdala .a 187 to 757 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA152196 amygdala .a 187 to 769 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA544626   .a 187 to 753 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA803381 brain .a 193 to 666 2 to 475   capped   474/474
(100 %)
0 diff
(100 %id)
DA233647 brain .a 195 to 793 2 to 600   capped   599/600
(99 %)
1 diff
(99.9 %id)
DA533834 brain .a 195 to 761 2 to 569   capped   568/568
(100 %)
3 diff
(99.5 %id)
DA614986   .a 195 to 636 2 to 444   capped   443/479
(92 %)
3 diff
(99.4 %id)
DA796369 brain .a 195 to 636 2 to 447   capped   446/466
(95 %)
7 diff
(98.5 %id)
DA583721 lung .a 198 to 749 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
CX871987 embryonic stem .a 198 to 864 1 to 667       667/667
(100 %)
0 diff
(100 %id)
DB178024 kidney, tumor tissue .a 199 to 763 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BC001201 Eye, retinoblastoma .a 201 to 2230 1 to 2030 exact available from MGC, AAA   2030/2030
(100 %)
0 diff
(100 %id)
NM_030965.1   .a 201 to 2230 1 to 2030 exact RefSeq, AAA   2030/2030
(100 %)
0 diff
(100 %id)
TI_57240048   .a 202 to 1036 35 to 868       834/868
(96 %)
3 diff
(99.7 %id)
BI916580 brain .a 203 to 596 1 to 394       394/394
(100 %)
0 diff
(100 %id)
AW161096 brain, frontal lobe .a 204 to 653 1 to 449       449/449
(100 %)
2 diff
(99.6 %id)
BI755658 brain .a 213 to 596 1 to 383       383/383
(100 %)
1 diff
(99.8 %id)
TI_57218546   .a 213 to 682 36 to 504       469/506
(92 %)
1 diff
(99.9 %id)
DA802948 brain .a 215 to 774 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
CN260993 embryonic stem cells, DMSO-treated H9 cellline .a 220 to 814 9 to 603       595/603
(98 %)
0 diff
(100 %id)
BE251546 eye, retinoblastoma .a 220 to 864 1 to 644       644/646
(99 %)
3 diff
(99.6 %id)
CB152980 brain .a 301 to 865 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
AJ507292   .a 364 to 1404 1 to 1041 exact     1041/1041
(100 %)
0 diff
(100 %id)
CV025633 mixed .a 376 to 1005 1 to 630       630/630
(100 %)
0 diff
(100 %id)
TI_1948075227   .a 629 to 1390 873 to 115       759/1411
(53 %)
13 diff
(99.1 %id)
TI_1948076072   .a 634 to 1390 879 to 123       757/1098
(68 %)
36 diff
(96.8 %id)
CR610298 neuroblastoma .a 635 to 2193 1 to 1559       1559/1559
(100 %)
0 diff
(100 %id)
AL518206 brain, neuroblastoma, neuroblastoma cells .a 635 to 1301 1 to 651       651/660
(98 %)
20 diff
(97.0 %id)
BX425922 neuroblastoma .a 635 to 1110 1 to 474       474/474
(100 %)
26 diff
(94.6 %id)
BX425923 neuroblastoma .a 635 to 1155 1 to 522       522/522
(100 %)
6 diff
(98.9 %id)
DB466469 hippocampus .a 635 to 930 137 to 433       297/433
(68 %)
0 diff
(100 %id)
DC298539 adrenal gland .a 637 to 1102 117 to 582       466/582
(80 %)
0 diff
(100 %id)
F05978 brain, total brain .a 647 to 882 1 to 236       236/236
(100 %)
1 diff
(99.6 %id)
R59067 whole brain .a 653 to 1047 1 to 400       400/403
(99 %)
8 diff
(98.1 %id)
W28431 eye, retina .a 666 to 1032 58 to 423       366/463
(79 %)
6 diff
(98.8 %id)
TI_1948075228   .a 694 to 1390 808 to 117       692/1105
(62 %)
40 diff
(96.4 %id)
TI_1948075528   .a 717 to 1390 780 to 106       675/1413
(47 %)
33 diff
(97.7 %id)
BG474817 eye, retinoblastoma .a 730 to 1652 1 to 924       924/929
(99 %)
16 diff
(98.3 %id)
TI_1948075529   .a 743 to 1390 779 to 122       658/1125
(58 %)
42 diff
(96.3 %id)
FN137789 breast carcinoma .a 847 to 939 93 to 1     Submitted on the opposite strand 93/93
(100 %)
0 diff
(100 %id)
TI_1948075801   .a 884 to 1390 636 to 128       509/1450
(35 %)
37 diff
(97.5 %id)
DB470486 hippocampus .a 961 to 1329 70 to 439       370/439
(84 %)
1 diff
(99.8 %id)
AA071204 pineal gland .a 1041 to 1611 1 to 569       569/584
(97 %)
3 diff
(99.5 %id)
BX431327 neuroblastoma .a 1044 to 1983 1 to 944       944/944
(100 %)
9 diff
(99.1 %id)
TI_1948075802   .a 1075 to 1390 436 to 120       317/1169
(27 %)
3 diff
(99.8 %id)
AL561723 brain, neuroblastoma, neuroblastoma cells .a 1155 to 2210 1055 to 1       1055/1055
(100 %)
4 diff
(99.7 %id)
BX404601 neuroblastoma .a 1216 to 2215 1006 to 1       1006/1006
(100 %)
11 diff
(99.0 %id)
BX404600 neuroblastoma .a 1257 to 2193 940 to 1       940/940
(100 %)
35 diff
(96.3 %id)
CN260994 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 1265 to 1767 1 to 503       503/503
(100 %)
1 diff
(99.9 %id)
DA174489 amygdala .a 1278 to 1855 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
BQ292101 amnion_normal .a 1406 to 1780 374 to 1       374/374
(100 %)
12 diff
(96.8 %id)
AA071008 pineal gland .a 1658 to 2233 570 to 1       570/625
(91 %)
9 diff
(98.6 %id)
DB323769   .a 1716 to 2230 523 to 1       523/523
(100 %)
9 diff
(98.3 %id)
BX116155 whole brain .a 1743 to 2238 510 to 15   AAA   496/496
(100 %)
0 diff
(100 %id)
Z43731 brain, total brain .a 1789 to 2137 1 to 349       349/349
(100 %)
2 diff
(99.5 %id)
DB538642 hippocampus .a 1792 to 2229 1 to 438     Submitted on the opposite strand 438/438
(100 %)
1 diff
(99.8 %id)
AI024886 breast .a 1794 to 1958 165 to 1       165/165
(100 %)
0 diff
(100 %id)
DB530903 hippocampus .a 1797 to 2236 1 to 443     Submitted on the opposite strand 443/443
(100 %)
16 diff
(96.4 %id)
AA661985 alveolar rhabdomyosarcoma .a 1816 to 2129 314 to 1       314/314
(100 %)
3 diff
(99.1 %id)
DB529684 hippocampus .a 1819 to 2238 1 to 420     Submitted on the opposite strand 420/420
(100 %)
1 diff
(99.8 %id)
AA709472 pineal gland .a 1828 to 2233 404 to 1       404/404
(100 %)
1 diff
(99.8 %id)
DB533248 hippocampus .a 1831 to 2230 1 to 402     Submitted on the opposite strand 402/402
(100 %)
6 diff
(98.6 %id)
R59068 whole brain .a 1855 to 2241 401 to 6       396/408
(97 %)
0 diff
(100 %id)
DC425727 adrenal gland .a 1861 to 2238 379 to 1       379/379
(100 %)
1 diff
(99.8 %id)
AV748680 Pituitary .a 1876 to 2214 1 to 337       337/337
(100 %)
9 diff
(97.4 %id)
AW613475 carcinoid, lung .a 1884 to 2235 352 to 1       352/352
(100 %)
2 diff
(99.5 %id)
AA702376 pineal gland .a 1955 to 2238 296 to 15   AAA   282/282
(100 %)
2 diff
(99.3 %id)
Z38900 brain, total brain .a 1980 to 2238 259 to 1       259/259
(100 %)
0 diff
(100 %id)
AA670246   .a 2031 to 2195 165 to 1       165/165
(100 %)
1 diff
(99.4 %id)
AA081615   .a 2154 to 2480 1 to 327       327/327
(100 %)
1 diff
(99.7 %id)
AF131837   .a 2156 to 3887 1 to 1730   tiling clone, AAA   1730/1730
(100 %)
3 diff
(99.9 %id)
Z44914 brain, total brain .a 2156 to 2489 1 to 334       334/334
(100 %)
0 diff
(100 %id)
T80515 whole brain .a 2156 to 2542 1 to 398       398/438
(90 %)
8 diff
(98.2 %id)
F08298 brain, total brain .a 2157 to 2432 1 to 276       276/276
(100 %)
0 diff
(100 %id)
R13949 whole brain .a 2157 to 2619 1 to 483       483/483
(100 %)
26 diff
(94.7 %id)
H29148 whole brain .a 2158 to 2547 1 to 394       394/476
(82 %)
9 diff
(98.2 %id)
F08726 brain, total brain .a 2496 to 2744 1 to 247       247/247
(100 %)
1 diff
(99.6 %id)
BE766894 nervous_tumor .a 2586 to 3093 96 to 607   tiling clone,   512/616
(83 %)
15 diff
(97.6 %id)
T05412   .a 2958 to 3251 1 to 294       294/294
(100 %)
3 diff
(99.0 %id)
AW894940 nervous_normal .a 3179 to 3520 350 to 6       345/363
(95 %)
0 diff
(100 %id)
Z39792 brain, total brain .a 3277 to 3557 281 to 1       281/281
(100 %)
0 diff
(100 %id)
BX101801 whole brain .a 3402 to 3886 499 to 15   AAA   485/485
(100 %)
5 diff
(99.0 %id)
H29046 whole brain .a 3430 to 3887 467 to 11   AAA   457/459
(99 %)
15 diff
(96.8 %id)
AI401684 Prostate .a 3436 to 3887 452 to 1   tiling clone,   452/452
(100 %)
0 diff
(100 %id)
DB529568 hippocampus .a 3464 to 3895 1 to 435     Submitted on the opposite strand 435/435
(100 %)
6 diff
(98.7 %id)
AW057697 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 3467 to 3902 435 to 1   tiling clone,   435/435
(100 %)
5 diff
(98.9 %id)
AA084505   .a 3493 to 3887 394 to 1       394/394
(100 %)
1 diff
(99.8 %id)
Z41766 brain, total brain .a 3567 to 3887 321 to 1       321/321
(100 %)
2 diff
(99.4 %id)
R40009 whole brain .a 3579 to 3887 324 to 12   AAA   313/329
(95 %)
10 diff
(97.0 %id)
F03875 brain, total brain .a 3631 to 3887 257 to 1       257/257
(100 %)
3 diff
(98.9 %id)
DA697006   .b 1 to 572 11 to 582 exact tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
AK300902 small intestine .c 1 to 1421 5 to 1425 exact tiling clone,   1425/1425
(100 %)
5 diff
(99.7 %id)
DC388076 small intestine .c 1 to 541 5 to 546       546/546
(100 %)
4 diff
(99.3 %id)
DC377539 brain .d 1 to 572 1 to 572 exact tiling clone,   572/572
(100 %)
0 diff
(100 %id)
CX782445 human embryonic stem cells .e 1 to 737 6 to 742 exact tiling clone, fully sequenced,   742/742
(100 %)
0 diff
(100 %id)
DA005927   .e 5 to 465 2 to 462   capped   461/461
(100 %)
1 diff
(99.8 %id)
DN991149 brain, whole brain .e 19 to 539 8 to 528 exact     521/544
(95 %)
1 diff
(99.9 %id)
AA293145 ovarian tumor, ovary .e 614 to 965 1 to 352   tiling clone,   352/352
(100 %)
2 diff
(99.5 %id)
CX782372 human embryonic stem cells .e 707 to 1274 602 to 35   tiling clone, fully sequenced, AAA   568/568
(100 %)
4 diff
(99.3 %id)
AA365836 pineal body Gene ST6GALNAC5, variant not shown              
AK095758 brain Gene ST6GALNAC5, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AK295019 brain Gene ST6GALNAC5, variant not shown         Suspected internal deletion, this clone was ignored    
AW962421   Gene ST6GALNAC5, variant not shown              
BE083080 breast Gene ST6GALNAC5, variant not shown         Submitted on the opposite strand    
DB302819 amygdala Gene ST6GALNAC5, variant not shown              
DA178136 amygdala Gene ST6GALNAC5, variant not shown       capped      
DB303338 amygdala Gene ST6GALNAC5, variant not shown         This clone was ignored    
DA189932 amygdala Gene ST6GALNAC5, variant not shown       capped This clone was ignored    
DC323707 brain Gene ST6GALNAC5, variant not shown         Suspected internal deletion, this clone was ignored    
DC325524 brain Gene ST6GALNAC5, variant not shown         Suspected internal deletion, this clone was ignored    
DB317422 brain Gene ST6GALNAC5, variant not shown         Suspected internal deletion, this clone was ignored    
DA525285 brain Gene ST6GALNAC5, variant not shown       capped Suspected internal deletion, this clone was ignored    
AA430441 ovarian tumor, ovary Gene ST6GALNAC5, variant not shown              
AA453113 ovarian tumor, ovary Gene ST6GALNAC5, variant not shown       AAA      
DA679252   Gene ST6GALNAC5, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C