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Gene SHOX2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
54 supporting clones for gene SHOX2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BC008829 Muscle, rhabdomyosarcoma .a 1 to 2021 1 to 2021 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 2021/2021
(100 %)
4 diff
(99.9 %id)
BF304807 muscle, rhabdomyosarcoma .a 1 to 550 1 to 549       549/818
(67 %)
34 diff
(95.9 %id)
NM_003030.4   .a 1 to 3222 1 to 3222 exact RefSeq, AAA   3222/3222
(100 %)
0 diff
(100 %id)
EL733289 mixed .a 140 to 699 1 to 560       560/560
(100 %)
6 diff
(99.0 %id)
TI_1948243707   .a 333 to 1206 994 to 126       869/1299
(66 %)
32 diff
(97.6 %id)
TI_1948243548   .a 354 to 1206 975 to 129       847/1260
(67 %)
19 diff
(98.5 %id)
TI_1948243867   .a 485 to 1206 855 to 123       731/1373
(53 %)
22 diff
(98.4 %id)
NM_006884.3   .b 1 to 3150 1 to 3150 exact RefSeq, AAA   3150/3150
(100 %)
0 diff
(100 %id)
AW090166 brain, tumor, 5 pooled (see description) .b 513 to 870 352 to 1   tiling clone,   352/371
(94 %)
16 diff
(95.7 %id)
AA975300 pooled germ cell tumors .c 1 to 271 271 to 1   tiling clone,   271/271
(100 %)
5 diff
(98.2 %id)
BX331739 Neuroblastoma Cot 25-normalized .c 44 to 992 7 to 951   tiling clone,   945/951
(99 %)
19 diff
(98.1 %id)
NM_001163678.1   .c 379 to 3492 1 to 3114 exact RefSeq, AAA   3114/3114
(100 %)
0 diff
(100 %id)
AK309293 tongue, tumor tissue .c 808 to 1343 1 to 535   tiling clone,   535/953
(56 %)
6 diff
(99.4 %id)
DA447204 tongue, tumor tissue .c 809 to 1276 2 to 469   capped   468/468
(100 %)
0 diff
(100 %id)
AI831264 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .c 863 to 1357 495 to 1       495/495
(100 %)
2 diff
(99.6 %id)
AA235793 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 884 to 1063 1 to 179   fully sequenced,   179/179
(100 %)
1 diff
(99.5 %id)
AA447228   .c 890 to 1356 460 to 1       460/460
(100 %)
7 diff
(98.5 %id)
AA833689   .c 905 to 1138 233 to 1       233/233
(100 %)
1 diff
(99.6 %id)
AI131445 heart .c 917 to 1357 441 to 1       441/441
(100 %)
0 diff
(100 %id)
AW469645 pooled .c 942 to 1389 448 to 1       448/449
(99 %)
4 diff
(99.2 %id)
AI332507 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 943 to 1358 416 to 1       416/416
(100 %)
0 diff
(100 %id)
AW275395 pooled .c 946 to 1343 399 to 1       399/401
(99 %)
12 diff
(97.1 %id)
AI264087 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 967 to 1389 427 to 1   tiling clone,   427/431
(99 %)
10 diff
(97.7 %id)
AW275402 pooled .c 1006 to 1351 346 to 1       346/402
(86 %)
12 diff
(97.1 %id)
AA235989 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1033 to 1354 316 to 5   fully sequenced,   312/316
(98 %)
1 diff
(99.7 %id)
AK095338 tongue, tumor tissue .d 1 to 2464 2 to 2465 exact tiling clone, available from FLJ,   2465/2465
(100 %)
8 diff
(99.7 %id)
DA443098 tongue, tumor tissue .d 1 to 581 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
AF022654   .d 1338 to 4078 1 to 2749 exact tiling clone,   2749/2749
(100 %)
16 diff
(99.5 %id)
AA425240   .d 1428 to 1733 72 to 376   fully sequenced,   305/376
(81 %)
6 diff
(98.5 %id)
AA425758   .d 1672 to 1986 312 to 1   fully sequenced,   312/312
(100 %)
5 diff
(98.4 %id)
DB313820 tongue, tumor tissue .d 1923 to 2464 542 to 1       542/542
(100 %)
3 diff
(99.5 %id)
AA776974 heart .d 2012 to 2468 1 to 456     Submitted on the opposite strand 456/456
(100 %)
7 diff
(98.5 %id)
AI088226 heart .d 2013 to 2473 1 to 459     Submitted on the opposite strand 459/459
(100 %)
7 diff
(98.5 %id)
AI126714 heart .d 2030 to 2427 1 to 398     Submitted on the opposite strand 398/398
(100 %)
1 diff
(99.8 %id)
AI016607   .d 2040 to 2529 1 to 490     Submitted on the opposite strand 490/490
(100 %)
2 diff
(99.6 %id)
AI088265 heart .d 2040 to 2436 1 to 397     Submitted on the opposite strand 397/397
(100 %)
0 diff
(100 %id)
AA333177 Embryo, 8 weeks .d 2184 to 2462 1 to 279       279/279
(100 %)
0 diff
(100 %id)
AW965332   .d 2185 to 2576 1 to 393       393/393
(100 %)
23 diff
(94.2 %id)
AW965334   .d 2185 to 2721 1 to 545   tiling clone,   545/545
(100 %)
23 diff
(95.8 %id)
BQ233296 epithelioid carcinoma, Pancreas .d 2598 to 3387 1 to 803   tiling clone,   803/904
(88 %)
19 diff
(97.9 %id)
BE926188 breast_normal .d 3255 to 3495 246 to 6       241/252
(95 %)
0 diff
(100 %id)
AA025457 heart .d 3591 to 4020 430 to 1       430/430
(100 %)
5 diff
(98.9 %id)
AA425552   .d 3708 to 4118 28 to 437   fully sequenced,   410/437
(93 %)
6 diff
(98.7 %id)
AW090534 brain, tumor, 5 pooled (see description) .d 3714 to 4095 408 to 27   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 382/382
(100 %)
20 diff
(94.8 %id)
AA425429   .d 3722 to 3868 1 to 147   fully sequenced, Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 147/147
(100 %)
1 diff
(99.4 %id)
AI277252 placenta .d 3727 to 4123 400 to 4       397/400
(99 %)
0 diff
(100 %id)
W46863 senescent fibroblast .d 3731 to 4180 463 to 10   tiling clone,   454/463
(98 %)
0 diff
(100 %id)
AA450208   .d 3731 to 4122 403 to 12   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 392/392
(100 %)
0 diff
(100 %id)
BF109195 pooled .d 3741 to 4123 386 to 4       383/386
(99 %)
0 diff
(100 %id)
AA425293   .d 3838 to 4122 299 to 15   fully sequenced, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 285/285
(100 %)
0 diff
(100 %id)
AA425419   .d 3851 to 4128 286 to 9   fully sequenced,   278/286
(97 %)
5 diff
(98.3 %id)
AA709029 uterus .d 3874 to 4123 255 to 6       250/255
(98 %)
0 diff
(100 %id)
AI816713 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .e 1 to 510 510 to 1 G23A K26X L166M tiling clone,   510/510
(100 %)
3 diff
(99.5 %id)
W24124 senescent fibroblast .f 1 to 439 1 to 448 G4X K18X E53X G54X Q55R ... tiling clone,   446/448
(99 %)
18 diff
(96.0 %id)
DB524853.
matches multiple genes
testis .g-u 1 to 478 478 to 1 exact tiling clone, also hits gene homeobox.49 478/478
(100 %)
5 diff
(99.0 %id)
AI970620 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .h-u 1 to 372 406 to 35 P7R K35* tiling clone,   372/406
(91 %)
0 diff
(100 %id)
AJ002367   Gene SHOX2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
AJ002368   Gene SHOX2, variant not shown       AAA Suspected internal deletion, this clone was ignored    
TI_1948244026   Gene SHOX2, variant not shown         Suspected internal deletion, this clone was ignored    
TI_1948244027   Gene SHOX2, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC