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Gene SHHTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
65 supporting clones for gene SHH back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX461534 brain, fetal brain .a 1 to 618 1 to 624   tiling clone,   624/624
(100 %)
47 diff
(92.5 %id)
L38518 lung .a 168 to 1742 1 to 1575 exact tiling clone,   1575/1576
(99 %)
2 diff
(99.9 %id)
NM_000193.2   .a 168 to 1743 1 to 1576 exact RefSeq,   1576/1576
(100 %)
0 diff
(100 %id)
AA076750 brain .a 218 to 504 1 to 288   tiling clone,   288/288
(100 %)
1 diff
(99.7 %id)
BX452210 brain, fetal brain .a 258 to 991 1 to 725       725/923
(78 %)
19 diff
(98.0 %id)
BC111925 Synthetic constructs .a 319 to 1704 35 to 1420       1386/1447
(95 %)
7 diff
(99.6 %id)
TI_1105484809   .a 319 to 786 38 to 505       468/505
(92 %)
6 diff
(98.9 %id)
TI_1105484828   .a 319 to 702 38 to 421       384/421
(91 %)
9 diff
(97.9 %id)
TI_1105484829   .a 319 to 775 12 to 468       457/468
(97 %)
6 diff
(98.8 %id)
TI_1105484836   .a 345 to 935 591 to 1       591/591
(100 %)
0 diff
(100 %id)
TI_1105484827   .a 354 to 826 1 to 473       473/473
(100 %)
0 diff
(100 %id)
TI_1105484808   .a 355 to 866 1 to 512       512/512
(100 %)
0 diff
(100 %id)
TI_1105484815   .a 358 to 935 578 to 1       578/578
(100 %)
0 diff
(100 %id)
TI_1105484816   .a 565 to 947 383 to 1       383/383
(100 %)
0 diff
(100 %id)
TI_1105484814   .a 599 to 1283 685 to 1       685/685
(100 %)
0 diff
(100 %id)
TI_1105484822   .a 704 to 1110 1 to 407       407/407
(100 %)
0 diff
(100 %id)
TI_1105484804   .a 715 to 1421 1 to 707       707/707
(100 %)
0 diff
(100 %id)
TI_1105484813   .a 763 to 1078 316 to 1       316/316
(100 %)
0 diff
(100 %id)
TI_1105484833   .a 764 to 1347 584 to 1       584/584
(100 %)
0 diff
(100 %id)
TI_1105484839   .a 821 to 919 99 to 1       99/99
(100 %)
0 diff
(100 %id)
TI_1105484834   .a 998 to 1193 196 to 1       196/196
(100 %)
0 diff
(100 %id)
TI_1105484835   .a 1030 to 1331 302 to 1       302/302
(100 %)
0 diff
(100 %id)
TI_1105484824   .a 1108 to 1479 1 to 372       372/372
(100 %)
0 diff
(100 %id)
TI_1105484806   .a 1109 to 1704 1 to 596       596/598
(99 %)
1 diff
(99.9 %id)
TI_1105484805   .a 1111 to 1704 1 to 594       594/626
(94 %)
1 diff
(99.9 %id)
TI_1105484823   .a 1111 to 1704 1 to 594       594/626
(94 %)
1 diff
(99.9 %id)
TI_1105484831   .a 1228 to 1704 497 to 21       477/497
(95 %)
0 diff
(100 %id)
TI_1105484830   .a 1271 to 1704 466 to 33       434/466
(93 %)
0 diff
(100 %id)
TI_1105484811   .a 1283 to 1704 454 to 33       422/454
(92 %)
0 diff
(100 %id)
TI_1105484812   .a 1285 to 1704 452 to 33       420/452
(92 %)
0 diff
(100 %id)
TI_1105484832   .a 1343 to 1704 394 to 33       362/394
(91 %)
0 diff
(100 %id)
TI_1105484810   .a 1351 to 1704 386 to 33       354/386
(91 %)
0 diff
(100 %id)
TI_1105484807   .a 1507 to 1704 1 to 198       198/230
(86 %)
1 diff
(99.6 %id)
TI_1105484826   .a 1507 to 1704 1 to 198       198/230
(86 %)
1 diff
(99.6 %id)
TI_1105484825   .a 1508 to 1704 1 to 197       197/229
(86 %)
1 diff
(99.6 %id)
BY797055 eye .b-u 1 to 570 1 to 570   tiling clone,   570/580
(98 %)
1 diff
(99.9 %id)
BX109787 liver and spleen .b-u 65 to 617 1 to 553   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 553/568
(97 %)
1 diff
(99.9 %id)
R05606 liver and spleen .b-u 65 to 355 1 to 294   fully sequenced,   294/294
(100 %)
1 diff
(99.7 %id)
BI457468 epithelioid carcinoma cell line, Pancreas .b-u 88 to 746 1 to 697       697/1002
(69 %)
73 diff
(92.8 %id)
AI739013 colon, colon tumor, RER+ .b-u 156 to 611 456 to 1       456/456
(100 %)
0 diff
(100 %id)
R05499 liver and spleen .b-u 325 to 592 274 to 1   fully sequenced,   274/274
(100 %)
1 diff
(99.7 %id)
BM926264 brain .b-u 399 to 1348 20 to 966   tiling clone,   947/1057
(89 %)
6 diff
(99.5 %id)
AW271826 Kidney .b-u 788 to 1036 256 to 8   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 249/256
(97 %)
0 diff
(100 %id)
AW857281 colon .b-u 851 to 1050 200 to 1       200/227
(88 %)
17 diff
(92.6 %id)
DA385168 thalamus .b-u 982 to 1452 2 to 473   tiling clone, capped   472/472
(100 %)
2 diff
(99.6 %id)
BQ932600 large cell carcinoma, lung .b-u 1054 to 1455 1 to 412       412/824
(50 %)
20 diff
(97.6 %id)
Z44386 brain, total brain .b-u 1348 to 1675 1 to 328   tiling clone,   328/328
(100 %)
0 diff
(100 %id)
DW410548 Liver .b-u 1435 to 1751 333 to 17   tiling clone,   317/333
(95 %)
0 diff
(100 %id)
BG822410 adenocarcinoma cell line, colon .b-u 1595 to 2256 1 to 662   tiling clone,   662/663
(99 %)
15 diff
(97.8 %id)
AV693558 hepatocellular carcinoma .b-u 1689 to 2159 1 to 467       467/471
(99 %)
36 diff
(92.4 %id)
AA077592 brain .b-u 1822 to 2112 292 to 2   tiling clone,   291/292
(99 %)
0 diff
(100 %id)
AA076861 brain .b-u 1864 to 2112 250 to 2   tiling clone,   249/250
(99 %)
0 diff
(100 %id)
AW969518   .b-u 2276 to 2686 35 to 445   tiling clone,   411/445
(92 %)
6 diff
(98.7 %id)
DB311615 thalamus .b-u 2332 to 2871 540 to 1       540/540
(100 %)
0 diff
(100 %id)
AA503654 colon .b-u 2391 to 2871 481 to 1       481/481
(100 %)
0 diff
(100 %id)
CB162022 Liver .b-u 2499 to 2871 400 to 28     Submitted on the opposite strand 373/400
(93 %)
0 diff
(100 %id)
AI192528 lung .b-u 2517 to 2873 358 to 2   tiling clone,   357/358
(99 %)
0 diff
(100 %id)
BM999202 lung, Lung Focal Fibrosis .b-u 2597 to 2845 9 to 257     Submitted on the opposite strand 249/265
(93 %)
3 diff
(98.9 %id)
Z41337 brain, total brain .b-u 2620 to 2873 254 to 1       254/254
(100 %)
0 diff
(100 %id)
AA904572 pooled .b-u 2622 to 2873 252 to 1       252/252
(100 %)
0 diff
(100 %id)
F03498 brain, total brain .b-u 2691 to 2873 183 to 1       183/183
(100 %)
0 diff
(100 %id)
T24518   .b-u 2746 to 2870 129 to 1       129/129
(100 %)
6 diff
(95.4 %id)
AY927452   .c 1 to 667 1 to 667   tiling clone,   667/746
(89 %)
9 diff
(98.8 %id)
AY927455   .c 1 to 677 1 to 677 K16E tiling clone,   677/678
(99 %)
2 diff
(99.8 %id)
AY927454   .d 1 to 888 1 to 888 exact tiling clone,   888/961
(92 %)
5 diff
(99.5 %id)
AY927453   .e 1 to 807 1 to 807 exact tiling clone,   807/881
(91 %)
3 diff
(99.7 %id)
AY927451   .f 1 to 504 1 to 504 exact tiling clone,   504/504
(100 %)
0 diff
(100 %id)
AY927450   Gene SHH, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b-u, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI