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Gene SHANK1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
31 supporting clones for gene SHANK1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
EU872208   .a 1 to 424 1 to 425   tiling clone,   425/425
(100 %)
1 diff
(99.8 %id)
AF163302   .a 403 to 7045 1 to 6643 S927Y P937T S969T F1085I T1133S ... tiling clone,   6643/6643
(100 %)
7 diff
(99.9 %id)
NM_016148.2   .a 403 to 7045 1 to 6643 exact RefSeq,   6643/6643
(100 %)
0 diff
(100 %id)
DA082106 cerebellum .a 812 to 1312 2 to 502   capped   501/501
(100 %)
0 diff
(100 %id)
AW900154 nervous_normal .a 2728 to 3195 1 to 231       231/234
(98 %)
5 diff
(97.9 %id)
BF952105 nervous_normal .a 2936 to 3162 7 to 232       226/247
(91 %)
10 diff
(96.0 %id)
BE062681 breast .a 5300 to 5512 238 to 26     Submitted on the opposite strand 213/247
(86 %)
0 diff
(100 %id)
BE062682 breast .a 5300 to 5512 225 to 15     Submitted on the opposite strand 211/234
(90 %)
0 diff
(100 %id)
BX283115 brain, neuroblastoma .a 5491 to 5869 1 to 380       380/382
(99 %)
2 diff
(99.5 %id)
BI196108 brain, neuroblastoma .a 5491 to 6040 1 to 550       550/550
(100 %)
4 diff
(99.3 %id)
DN831178 pooled .a 5766 to 6483 718 to 1   tiling clone, Submitted on the opposite strand 718/718
(100 %)
4 diff
(99.5 %id)
BQ340827 nervous_normal .a 5775 to 5892 124 to 8       117/124
(94 %)
0 diff
(100 %id)
DN831177 pooled .a 5801 to 6511 1 to 711       711/711
(100 %)
2 diff
(99.8 %id)
R88191 brain .a 5910 to 6212 1 to 303       303/307
(98 %)
4 diff
(98.7 %id)
CK000629 mixed .a 6213 to 6727 1 to 517       517/784
(65 %)
6 diff
(99.3 %id)
AF226728   .b 1 to 4785 1 to 4785 S314Y P324T S356T F472I T520S ... tiling clone,   4785/4785
(100 %)
7 diff
(99.9 %id)
BF770520 epid_tumor .c 1 to 464 1 to 464   tiling clone,   464/464
(100 %)
2 diff
(99.6 %id)
BF771112 epid_tumor .c 1 to 464 1 to 464       464/464
(100 %)
2 diff
(99.6 %id)
BF770524 epid_tumor .c 9 to 142 1 to 140       140/150
(93 %)
14 diff
(90.7 %id)
BF771116 epid_tumor .c 9 to 142 1 to 140       140/150
(93 %)
14 diff
(90.7 %id)
TI_159698547   .c 267 to 1059 865 to 78   tiling clone, AAA   788/995
(79 %)
32 diff
(96.8 %id)
BF969037 adrenal cortex carcinoma, cell line, adrenal gland .d 1 to 781 1 to 782 exact tiling clone,   782/782
(100 %)
20 diff
(97.5 %id)
BM475356 eye, retinoblastoma .d 483 to 1166 13 to 706   tiling clone,   694/1160
(59 %)
17 diff
(98.6 %id)
BQ422598 embryonal carcinoma, cell line, testis .d 914 to 1469 1 to 556   tiling clone,   556/569
(97 %)
1 diff
(99.9 %id)
BF970858 adrenal cortex carcinoma, cell line, adrenal gland .d 1307 to 1968 1 to 662   tiling clone,   662/1036
(63 %)
15 diff
(98.6 %id)
AW857250 colon .d 1810 to 2014 1 to 208   tiling clone,   208/208
(100 %)
8 diff
(96.2 %id)
BE066122 breast .d 1812 to 2014 45 to 246       202/246
(82 %)
6 diff
(97.6 %id)
BE066128 breast .d 1813 to 2014 200 to 1   tiling clone, Submitted on the opposite strand 200/200
(100 %)
2 diff
(99.0 %id)
BI195188 brain, neuroblastoma .e 1 to 566 589 to 10 D2V T5D T7P S8R P9S ... tiling clone, Submitted on the opposite strand 580/1022
(56 %)
28 diff
(97.3 %id)
BE258286 eye, retinoblastoma .e 435 to 862 2 to 435   tiling clone,   440/437
(100 %)
8 diff
(98.2 %id)
DA151236 amygdala .f 1 to 557 2 to 558 exact tiling clone, capped   557/557
(100 %)
0 diff
(100 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI