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Gene SH3GL3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
127 supporting clones for gene SH3GL3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF036271 brain .a 1 to 2012 1 to 2015 exact tiling clone,   2015/2015
(100 %)
1 diff
(100.0 %id)
DT217229 brain .a 487 to 1130 1 to 644       644/644
(100 %)
1 diff
(99.9 %id)
DA265658 caudate nucleus .b 1 to 388 2 to 389   tiling clone, capped   388/388
(100 %)
0 diff
(100 %id)
BP228213   .b 216 to 798 1 to 583       583/583
(100 %)
0 diff
(100 %id)
NM_003027.3   .b 216 to 1906 1 to 1691   RefSeq, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 1691/1691
(100 %)
0 diff
(100 %id)
BP213317 cerebrum .b 218 to 797 1 to 580       580/580
(100 %)
0 diff
(100 %id)
DB480673 hippocampus .b 218 to 723 1 to 506       506/506
(100 %)
0 diff
(100 %id)
DN989778 brain, whole brain .b 237 to 786 8 to 557       550/557
(98 %)
6 diff
(99.0 %id)
BI599045 brain, hypothalamus .b 238 to 978 1 to 742       742/742
(100 %)
8 diff
(99.0 %id)
BI597342 brain, hypothalamus .b 238 to 963 1 to 726       726/728
(99 %)
9 diff
(98.8 %id)
BG773484 testis .b 239 to 316 1 to 78       78/78
(100 %)
4 diff
(94.9 %id)
TI_45215151   .b 239 to 978 162 to 902       741/902
(82 %)
10 diff
(98.9 %id)
TI_45216116   .b 239 to 963 123 to 847       725/849
(85 %)
12 diff
(98.6 %id)
BP367004 thymus .b 239 to 823 1 to 585       585/585
(100 %)
0 diff
(100 %id)
TI_44165440   .b 240 to 944 114 to 819       706/819
(86 %)
11 diff
(98.7 %id)
TI_44000773   .b 240 to 947 83 to 793       711/794
(89 %)
15 diff
(98.2 %id)
BG700061 brain, hippocampus .b 243 to 316 1 to 74       74/74
(100 %)
4 diff
(94.6 %id)
BI545363 brain, hippocampus .b 244 to 944 1 to 702       702/702
(100 %)
8 diff
(98.9 %id)
BI544603 brain, hippocampus .b 244 to 947 1 to 707       707/708
(99 %)
13 diff
(98.2 %id)
DA134983 alzheimer cortex .b 246 to 802 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA345253 substantia nigra .b 254 to 823 2 to 578   capped   577/579
(99 %)
12 diff
(98.0 %id)
TI_44350306   .b 255 to 733 123 to 600       478/601
(79 %)
9 diff
(98.6 %id)
BG718322 testis .b 256 to 316 1 to 61       61/61
(100 %)
3 diff
(95.1 %id)
BG718252 testis .b 256 to 316 1 to 61       61/61
(100 %)
3 diff
(95.1 %id)
BG718329 testis .b 256 to 316 1 to 61       61/61
(100 %)
3 diff
(95.1 %id)
BG772996 testis .b 256 to 316 1 to 61       61/61
(100 %)
3 diff
(95.1 %id)
BI562406 testis .b 258 to 733 1 to 475       475/476
(99 %)
6 diff
(98.8 %id)
DB458804 testis .b 271 to 726 1 to 456       456/456
(100 %)
0 diff
(100 %id)
AV722764 hypothalamus .b 323 to 854 9 to 539       531/577
(92 %)
8 diff
(98.7 %id)
AV723961 hypothalamus .b 323 to 726 1 to 397       397/401
(99 %)
4 diff
(99.1 %id)
AV724917 hypothalamus .b 323 to 1015 1 to 689       689/704
(97 %)
6 diff
(99.2 %id)
AI130739 heart .b 352 to 813 1 to 462     Submitted on the opposite strand 462/462
(100 %)
1 diff
(99.8 %id)
AI769064 pooled .b 371 to 939 1 to 569     Submitted on the opposite strand 569/571
(99 %)
6 diff
(99.0 %id)
AA453463   .b 373 to 848 1 to 476     Submitted on the opposite strand 476/476
(100 %)
0 diff
(100 %id)
AI215943   .b 373 to 639 1 to 266     Submitted on the opposite strand 266/266
(100 %)
1 diff
(99.7 %id)
AI351402   .b 382 to 778 1 to 399     Submitted on the opposite strand 399/399
(100 %)
7 diff
(98.3 %id)
BC035598 Brain, adult, 6 pooled whole brains .b 388 to 1906 1 to 1519   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 1519/1519
(100 %)
0 diff
(100 %id)
AA625363 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 399 to 842 461 to 17     Submitted on the opposite strand 445/461
(96 %)
1 diff
(99.8 %id)
TI_1948155884   .b 404 to 1245 133 to 974       842/1272
(66 %)
18 diff
(98.6 %id)
TI_1948156054   .b 404 to 1245 132 to 974   AAA   843/1289
(65 %)
15 diff
(98.9 %id)
AF036269 brain .b 408 to 1906 1 to 1502       1502/1502
(100 %)
1 diff
(100.0 %id)
AF036272 brain .b 408 to 1344 1 to 937       937/2738
(34 %)
3 diff
(99.9 %id)
AA382314 testis .b 409 to 810 1 to 407       407/476
(85 %)
8 diff
(98.4 %id)
EL733977 mixed .b 411 to 1069 1 to 659       659/659
(100 %)
2 diff
(99.7 %id)
X99664 brain .b 411 to 1906 1 to 1500       1500/1500
(100 %)
4 diff
(99.8 %id)
BI753406 brain .b 453 to 1033 68 to 646   available from MGC,   581/646
(89 %)
11 diff
(98.3 %id)
TI_57218248   .b 453 to 1033 99 to 677       581/677
(85 %)
11 diff
(98.4 %id)
TI_44351139   .b 453 to 920 328 to 812       483/1183
(40 %)
24 diff
(98.0 %id)
BX108620   .b 540 to 1239 1 to 700       700/700
(100 %)
0 diff
(100 %id)
AA400405   .b 540 to 894 1 to 354       354/354
(100 %)
2 diff
(99.5 %id)
CN314563 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 568 to 997 1 to 430       430/430
(100 %)
0 diff
(100 %id)
DB306827 caudate nucleus .b 1380 to 1906 530 to 1       530/530
(100 %)
2 diff
(99.7 %id)
AA400406   .b 1579 to 1906 329 to 1       329/329
(100 %)
3 diff
(99.1 %id)
BC042864 testis .c 1 to 1754 1 to 1757 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 1757/1757
(100 %)
2 diff
(99.9 %id)
TI_1948155720   .c 141 to 643 131 to 633   fully sequenced,   503/633
(79 %)
6 diff
(99.1 %id)
TI_1948156221   .c 196 to 1013 946 to 126       821/1297
(63 %)
7 diff
(99.5 %id)
TI_1948155721   .c 582 to 1013 554 to 123   fully sequenced,   432/554
(77 %)
0 diff
(100 %id)
BG209148   .c 981 to 1594 1 to 614       614/801
(76 %)
26 diff
(96.8 %id)
BG204898   .c 1177 to 1840 1 to 666   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 666/666
(100 %)
8 diff
(98.8 %id)
BG220606   .c 1177 to 1840 1 to 666   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 666/666
(100 %)
7 diff
(99.0 %id)
BF446088 Prostate .c 1180 to 1840 659 to 1       659/713
(92 %)
14 diff
(98.1 %id)
BG183174   .c 1182 to 1362 43 to 222       180/222
(81 %)
6 diff
(97.3 %id)
AA432226   .c 1186 to 1562 1 to 377       377/377
(100 %)
1 diff
(99.8 %id)
AW593085 pooled .c 1225 to 1559 335 to 1       335/343
(97 %)
0 diff
(100 %id)
BI489891 pooled brain, lung, testis .c 1240 to 1722 1 to 479       479/481
(99 %)
7 diff
(98.6 %id)
TI_43960562   .c 1241 to 1722 69 to 546       478/548
(87 %)
7 diff
(98.8 %id)
AI217188   .c 1254 to 1580 327 to 1       327/327
(100 %)
0 diff
(100 %id)
AI207911 brain, oligodendroglioma .c 1287 to 1805 519 to 1       519/522
(99 %)
1 diff
(99.9 %id)
CV572853 cornea, eye .c 1288 to 1840 573 to 18   AAA Submitted on the opposite strand 556/556
(100 %)
1 diff
(99.9 %id)
DB569867 hypothalamus .c 1307 to 1840 1 to 534     Submitted on the opposite strand 534/534
(100 %)
6 diff
(98.9 %id)
BQ066973 brain .c 1319 to 1841 10 to 534       525/1118
(46 %)
3 diff
(99.8 %id)
DB551428 hippocampus .c 1350 to 1840 1 to 494     Submitted on the opposite strand 494/494
(100 %)
2 diff
(99.6 %id)
DB524302 testis .c 1352 to 1840 1 to 492     Submitted on the opposite strand 492/492
(100 %)
1 diff
(99.8 %id)
DB573411 hypothalamus .c 1375 to 1840 1 to 469     Submitted on the opposite strand 469/469
(100 %)
1 diff
(99.8 %id)
DB565933 hypothalamus .c 1377 to 1838 1 to 465     Submitted on the opposite strand 465/467
(99 %)
2 diff
(99.6 %id)
DB560197 hypothalamus .c 1399 to 1840 1 to 445     Submitted on the opposite strand 445/445
(100 %)
2 diff
(99.6 %id)
DB549443 hippocampus .c 1415 to 1840 1 to 429     Submitted on the opposite strand 429/429
(100 %)
1 diff
(99.8 %id)
DB559117 hypothalamus .c 1432 to 1840 1 to 411     Submitted on the opposite strand 411/412
(99 %)
8 diff
(98.1 %id)
AI333036 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 1442 to 1843 405 to 1   tiling clone,   405/405
(100 %)
1 diff
(99.8 %id)
BF958562 nervous_normal .c 1469 to 1645 1 to 178       178/178
(100 %)
7 diff
(96.1 %id)
AI336437 lung .c 1469 to 1840 383 to 11   AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 373/373
(100 %)
3 diff
(99.2 %id)
M85715   .c 1514 to 1842 335 to 1       335/336
(99 %)
4 diff
(98.9 %id)
DB532884 hippocampus .c 1551 to 1840 1 to 291     Submitted on the opposite strand 291/291
(100 %)
6 diff
(98.0 %id)
NR_026799.1   .d 1 to 1684 1 to 1684 exact RefSeq, tiling clone, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 1684/1684
(100 %)
0 diff
(100 %id)
BI545622 brain, hippocampus .d 19 to 758 1 to 743       743/917
(81 %)
22 diff
(97.7 %id)
BI548069 brain, hippocampus .d 20 to 699 2 to 675       674/677
(99 %)
19 diff
(97.2 %id)
TI_44165702   .d 20 to 758 83 to 824       742/998
(74 %)
22 diff
(97.8 %id)
AK307442 alzheimer cortex .d 38 to 1315 1 to 1278 exact     1278/1278
(100 %)
0 diff
(100 %id)
DB482563 hippocampus .d 38 to 529 1 to 492       492/492
(100 %)
3 diff
(99.4 %id)
DA140824 alzheimer cortex .d 39 to 674 2 to 638   capped   637/637
(100 %)
2 diff
(99.7 %id)
DB494887 hypothalamus .d 39 to 533 1 to 495       495/495
(100 %)
3 diff
(99.4 %id)
DB502205 hypothalamus .d 43 to 506 1 to 464       464/464
(100 %)
1 diff
(99.8 %id)
TI_44169079   .d 61 to 721 81 to 740       660/740
(89 %)
7 diff
(99.1 %id)
BI547720 brain, hippocampus .d 65 to 721 1 to 656       656/656
(100 %)
5 diff
(99.3 %id)
TI_151752086   .d 132 to 973 23 to 865     Submitted on the opposite strand 843/865
(97 %)
12 diff
(98.7 %id)
AA808623 carcinoid, lung .d 158 to 648 1 to 490     Submitted on the opposite strand 490/490
(100 %)
6 diff
(98.8 %id)
AA995756 carcinoid, lung .d 158 to 464 1 to 307     Submitted on the opposite strand 307/307
(100 %)
1 diff
(99.7 %id)
TI_44343771   .d 186 to 923 163 to 907       745/925
(80 %)
22 diff
(97.7 %id)
AF036270 brain .d 193 to 1684 1 to 1495 exact     1495/1495
(100 %)
1 diff
(100.0 %id)
H50292 brain .d 238 to 616 385 to 1     Submitted on the opposite strand 385/407
(94 %)
7 diff
(98.3 %id)
H20194 brain .d 248 to 361 1 to 114   fully sequenced, Submitted on the opposite strand 114/114
(100 %)
0 diff
(100 %id)
H19571 brain .d 277 to 616 347 to 1     Submitted on the opposite strand 347/349
(99 %)
9 diff
(97.5 %id)
H20385 brain .d 331 to 616 287 to 2   fully sequenced, Submitted on the opposite strand 286/287
(99 %)
0 diff
(100 %id)
AA095349   .d 504 to 649 1 to 146       146/146
(100 %)
7 diff
(95.3 %id)
T05714   .d 575 to 802 1 to 229       229/229
(100 %)
1 diff
(99.6 %id)
F12421 brain, total brain .d 652 to 997 1 to 347       347/347
(100 %)
2 diff
(99.5 %id)
T74283 whole brain .d 677 to 1026 1 to 352       352/383
(91 %)
8 diff
(98.0 %id)
BM717127 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 704 to 1477 776 to 1     Submitted on the opposite strand 776/776
(100 %)
8 diff
(99.0 %id)
F10038 brain, total brain .d 1371 to 1684 317 to 1       317/317
(100 %)
2 diff
(99.4 %id)
CB154823 brain .e 1 to 584 47 to 630 exact tiling clone,   584/630
(92 %)
6 diff
(99.1 %id)
DB516339 testis .f 1 to 458 1 to 458 exact tiling clone, Submitted on the opposite strand 458/460
(99 %)
1 diff
(99.8 %id)
AI655025 pooled germ cell tumors .f 136 to 504 370 to 2   tiling clone,   369/405
(91 %)
0 diff
(100 %id)
AK309086 hippocampus .g 1 to 1170 1 to 1170   tiling clone,   1170/1170
(100 %)
0 diff
(100 %id)
DA335324 hippocampus .g 2 to 587 2 to 588 *86L capped   587/587
(100 %)
1 diff
(99.9 %id)
AL109775   .h-u 1 to 1041 1 to 1044 exact tiling clone, AAA Possibly primed on the genome, locally A rich (22/22 A in genome downstream of last aligned base) 1044/1044
(100 %)
1 diff
(100.0 %id)
N98307 multiple sclerosis lesions .h-u 1 to 207 14 to 223       210/223
(94 %)
6 diff
(97.4 %id)
CF455689 peripheral nervous system .h-u 3 to 692 26 to 715 exact     690/718
(96 %)
1 diff
(99.9 %id)
N49520 multiple sclerosis lesions .h-u 19 to 225 1 to 208       208/209
(99 %)
5 diff
(97.7 %id)
N66236 multiple sclerosis lesions .h-u 588 to 1041 460 to 1       460/465
(98 %)
4 diff
(99.2 %id)
N49417 multiple sclerosis lesions .h-u 595 to 1044 461 to 1   tiling clone,   461/463
(99 %)
13 diff
(97.2 %id)
DB300767 cerebellum Gene SH3GL3, variant not shown              
DA125119 cerebellum Gene SH3GL3, variant not shown       capped      
DA132089 alzheimer cortex Gene SH3GL3, variant not shown       capped      
DA174009 amygdala Gene SH3GL3, variant not shown       capped      
DA224820 brain Gene SH3GL3, variant not shown       capped      
DB305693 brain Gene SH3GL3, variant not shown         This clone was ignored    
DA235809 brain Gene SH3GL3, variant not shown       capped This clone was ignored    
DB306714 caudate nucleus Gene SH3GL3, variant not shown              
DA261816 caudate nucleus Gene SH3GL3, variant not shown       capped      
DB308222 hippocampus Gene SH3GL3, variant not shown         This clone was ignored    
DA305587 hippocampus Gene SH3GL3, variant not shown       capped This clone was ignored    
BX114632 multiple sclerosis lesions Gene SH3GL3, variant not shown              
AV725757 hypothalamus Gene SH3GL3, variant not shown         Suspected internal deletion, this clone was ignored    
DR977799 brain Gene SH3GL3, variant not shown       AAA Submitted on the opposite strand    
N52945 multiple sclerosis lesions Gene SH3GL3, variant not shown              
AA907312 pooled Gene SH3GL3, variant not shown              
BI668418 brain, hypothalamus Gene SH3GL3, variant not shown         Suspected internal deletion, this clone was ignored    
BQ956472 sciatic nerve Gene SH3GL3, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI