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Gene SH2D2ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
126 supporting clones for gene SH2D2A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001161441.1   .a 1 to 1666 8 to 1673 exact RefSeq, AAA   1673/1673
(100 %)
0 diff
(100 %id)
AY763099   .a 48 to 1667 1 to 1621 N52S tiling clone,   1621/1623
(99 %)
4 diff
(99.8 %id)
TI_1540413452   .a 82 to 387 318 to 13   tiling clone,   306/351
(87 %)
0 diff
(100 %id)
DB242714 stomach, tumor tissue .b 1 to 563 8 to 570   tiling clone, capped   569/569
(100 %)
1 diff
(99.9 %id)
DB101006 thymus .b 93 to 619 2 to 528   tiling clone, capped   527/527
(100 %)
1 diff
(99.9 %id)
DB342198 thymus .b 1758 to 2255 498 to 1   tiling clone,   498/498
(100 %)
2 diff
(99.6 %id)
NM_001161444.1   .c 1 to 1421 8 to 1428 exact RefSeq, AAA   1428/1428
(100 %)
0 diff
(100 %id)
BX406201 fetal liver, Liver .c 48 to 1060 1 to 1003   tiling clone,   1003/1063
(94 %)
18 diff
(98.4 %id)
AK222737 dermoid cancer .c 71 to 1421 1 to 1351 exact tiling clone, AAA   1351/1351
(100 %)
0 diff
(100 %id)
BX406200 fetal liver, Liver .c 1187 to 2169 975 to 1   tiling clone,   975/999
(97 %)
16 diff
(98.4 %id)
BF902681 marrow .c 1549 to 1948 1 to 398   tiling clone,   398/398
(100 %)
6 diff
(98.5 %id)
BF769742 epid_tumor .c 1607 to 1869 263 to 1     Submitted on the opposite strand 263/263
(100 %)
1 diff
(99.7 %id)
NM_003975.3   .d 1 to 1636 8 to 1643 exact RefSeq, AAA   1643/1643
(100 %)
0 diff
(100 %id)
DB128222 thymus .d 1 to 558 8 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DB128264 thymus .d 1 to 573 8 to 580   tiling clone, capped   579/579
(100 %)
0 diff
(100 %id)
AK313706 Kidney .d 1 to 1303 2 to 1304 N52S D211G     1304/1304
(100 %)
2 diff
(99.9 %id)
DA632154 Kidney .d 1 to 572 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
BQ052768 blood, natural killer cells, cell line .d 7 to 846 1 to 850       850/1065
(79 %)
18 diff
(98.4 %id)
TI_1540413546   .d 10 to 398 392 to 6       387/416
(93 %)
6 diff
(98.6 %id)
BQ233103 large cell carcinoma, lung .d 30 to 848 1 to 835       835/917
(91 %)
42 diff
(95.5 %id)
BG489152 large cell carcinoma, lung .d 31 to 882 1 to 851       851/852
(99 %)
19 diff
(97.8 %id)
BC012107 Lung, large cell carcinoma .d 32 to 1636 1 to 1605 N52S tiling clone, available from MGC, AAA   1605/1605
(100 %)
1 diff
(100.0 %id)
BM561846 blood, natural killer cells, cell line .d 43 to 843 1 to 802       802/1042
(76 %)
12 diff
(98.9 %id)
DR006774 Spleen .d 47 to 700 6 to 659       654/669
(97 %)
9 diff
(98.7 %id)
AJ000553   .d 48 to 1637 1 to 1590 N52S     1590/1592
(99 %)
2 diff
(99.9 %id)
BG389115 embryonal carcinoma, cell line, testis .d 49 to 838 1 to 780       780/1097
(71 %)
12 diff
(99.0 %id)
BM919011 pooled pancreas and spleen .d 64 to 991 1 to 936       934/1082
(86 %)
27 diff
(97.6 %id)
BP226535   .d 71 to 644 1 to 575       575/575
(100 %)
1 diff
(99.9 %id)
DB108313 thymus .d 72 to 651 2 to 582   capped   581/581
(100 %)
2 diff
(99.7 %id)
DB127847 thymus .d 72 to 631 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB128125 thymus .d 77 to 647 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BQ052734 blood, natural killer cells, cell line .d 86 to 999 1 to 924       924/1032
(89 %)
42 diff
(96.0 %id)
DA944584 Spleen .d 88 to 628 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
BI907795 leukocyte .d 92 to 645 1 to 573       573/753
(76 %)
24 diff
(96.9 %id)
TI_57234389   .d 92 to 645 31 to 603       573/783
(73 %)
30 diff
(96.2 %id)
BI911425 leukocyte .d 93 to 837 30 to 776       747/776
(96 %)
11 diff
(98.6 %id)
TI_57232234   .d 93 to 837 30 to 776       747/776
(96 %)
11 diff
(98.6 %id)
DA957601 Spleen .d 93 to 641 2 to 550   capped   549/549
(100 %)
3 diff
(99.5 %id)
AF097744   .d 95 to 1636 1 to 1542 N52S     1542/1542
(100 %)
1 diff
(100.0 %id)
BQ927524 large cell carcinoma, lung .d 95 to 846 1 to 758       758/968
(78 %)
11 diff
(98.9 %id)
BM922935 leukocyte .d 102 to 1133 11 to 1052       1042/1073
(97 %)
38 diff
(96.5 %id)
BM918624 pooled pancreas and spleen .d 107 to 1144 16 to 1059       1044/1098
(95 %)
32 diff
(97.1 %id)
BM805057 ovary (pool of 3) .d 109 to 847 19 to 761       743/1094
(67 %)
16 diff
(98.6 %id)
BQ073131 leukocyte .d 113 to 844 1 to 741       741/1152
(64 %)
27 diff
(97.7 %id)
CR983923 T-Lymphocytes .d 117 to 918 1 to 804       804/804
(100 %)
2 diff
(99.8 %id)
CR991028 T-Lymphocytes .d 117 to 846 1 to 734       734/736
(99 %)
11 diff
(98.6 %id)
BQ053065 blood, natural killer cells, cell line .d 121 to 1053 1 to 949       949/987
(96 %)
18 diff
(98.2 %id)
CT000749 T-Lymphocytes .d 124 to 846 1 to 720       720/730
(98 %)
8 diff
(99.0 %id)
CT002599 T-Lymphocytes .d 124 to 728 1 to 605       605/606
(99 %)
1 diff
(99.9 %id)
TI_1948085654   .d 133 to 789 128 to 785   fully sequenced,   658/785
(83 %)
7 diff
(99.2 %id)
CV028644 mixed .d 134 to 770 1 to 634       634/645
(98 %)
10 diff
(98.5 %id)
BX383062   .d 168 to 1018 199 to 1030       1020/1030
(99 %)
44 diff
(95.8 %id)
TI_1540413640   .d 168 to 393 231 to 7       408/481
(84 %)
12 diff
(97.6 %id)
CR991250 T-Lymphocytes .d 173 to 988 1 to 817       817/817
(100 %)
14 diff
(98.3 %id)
TI_1948085655   .d 759 to 1302 668 to 126   fully sequenced,   543/668
(81 %)
0 diff
(100 %id)
BQ225737 large cell carcinoma, lung .d 883 to 1631 12 to 762       751/879
(85 %)
9 diff
(99.0 %id)
BE787418 large cell carcinoma, lung .d 958 to 1596 1 to 635       635/635
(100 %)
41 diff
(93.6 %id)
BM769278 stomach .d 979 to 1631 1 to 652       652/652
(100 %)
2 diff
(99.7 %id)
BM773509 stomach .d 979 to 1620 1 to 642       642/642
(100 %)
1 diff
(99.9 %id)
BM843318 stomach .d 979 to 1546 1 to 568       568/568
(100 %)
1 diff
(99.9 %id)
BM818266 stomach .d 979 to 1546 1 to 568       568/568
(100 %)
1 diff
(99.9 %id)
AI660664 colon, colonic mucosa from 5 ulcerative colitispatients .d 1033 to 1637 605 to 3       603/607
(99 %)
4 diff
(99.4 %id)
BF511238   .d 1109 to 1630 538 to 18   AAA   521/521
(100 %)
2 diff
(99.7 %id)
CR740904 adenocarcinoma, Pancreas .d 1169 to 1636 486 to 15   AAA   472/473
(99 %)
4 diff
(99.2 %id)
BX097281 colon, moderately-differentiated adenocarcinoma .d 1184 to 1628 464 to 15   AAA   450/468
(96 %)
5 diff
(99.0 %id)
AI473914 colon, moderately-differentiated adenocarcinoma .d 1218 to 1628 413 to 4       410/413
(99 %)
1 diff
(99.8 %id)
BI907945 leukocyte .d 1221 to 1632 1 to 412   AAA   412/412
(100 %)
0 diff
(100 %id)
TI_57236341   .d 1221 to 1633 36 to 448   AAA   413/565
(73 %)
7 diff
(98.8 %id)
AA740970 2 pooled tumors (clear cell type), Kidney .d 1222 to 1631 414 to 5       410/414
(99 %)
0 diff
(100 %id)
BQ012931 placenta .d 1230 to 1636 425 to 19   AAA   407/407
(100 %)
0 diff
(100 %id)
AA720013 pineal gland .d 1259 to 1636 375 to 1       375/375
(100 %)
3 diff
(99.2 %id)
AA613070 colon, colon tumor RER+ .d 1263 to 1636 387 to 14   AAA   374/374
(100 %)
0 diff
(100 %id)
AA922281 pooled .d 1269 to 1637 373 to 5       369/373
(98 %)
0 diff
(100 %id)
AI003610 pineal gland .d 1284 to 1636 372 to 21   AAA   352/352
(100 %)
1 diff
(99.8 %id)
AA669510   .d 1318 to 1422 104 to 1       104/104
(100 %)
1 diff
(99.1 %id)
AW050914 colon, colonic mucosa from 3 patients with Crohn'sdisease .d 1330 to 1623 297 to 4       294/297
(98 %)
0 diff
(100 %id)
BE245509 leukopheresis .d 1352 to 1630 279 to 1       279/279
(100 %)
3 diff
(99.0 %id)
AA719598 pineal gland .d 1362 to 1637 276 to 1       276/276
(100 %)
0 diff
(100 %id)
AW079447 colon, moderately differentiated adenocarcinoma .d 1386 to 1637 256 to 5       252/256
(98 %)
0 diff
(100 %id)
NM_001161442.1   .e 1 to 1605 8 to 1612 exact RefSeq, AAA   1612/1612
(100 %)
0 diff
(100 %id)
TI_57182670   .e 7 to 784 36 to 812   tiling clone,   777/812
(95 %)
11 diff
(98.7 %id)
BI771226 pooled lung and spleen .e 8 to 784 1 to 776       776/776
(100 %)
5 diff
(99.4 %id)
BM917359 blood, natural killer cells, cell line .e 32 to 745 1 to 721       721/1232
(58 %)
26 diff
(97.9 %id)
AF051325   .e 40 to 1605 1 to 1565 N34S tiling clone, AAA   1565/1565
(100 %)
6 diff
(99.7 %id)
BG257858 embryonal carcinoma, cell line, testis .e 50 to 816 1 to 765       765/767
(99 %)
21 diff
(97.3 %id)
AA255949 germinal center B cell .e 51 to 472 1 to 420       420/420
(100 %)
6 diff
(98.6 %id)
AY763100   .e 57 to 1606 1 to 1550 N34S P93S L367F     1550/1552
(99 %)
4 diff
(99.8 %id)
BI912451 leukocyte .e 95 to 798 9 to 711       703/711
(98 %)
13 diff
(98.2 %id)
TI_57247538   .e 95 to 869 34 to 809       776/811
(95 %)
22 diff
(97.3 %id)
BI820427 pooled brain, lung, testis .e 112 to 871 1 to 759       757/760
(99 %)
11 diff
(98.6 %id)
TI_57197736   .e 112 to 871 36 to 794       757/795
(95 %)
16 diff
(98.0 %id)
BQ052288 blood, natural killer cells, cell line .e 160 to 944 1 to 799   AAA   799/1071
(74 %)
24 diff
(97.8 %id)
BI767125 pooled lung and spleen .e 162 to 802 4 to 653       654/653
(100 %)
17 diff
(97.4 %id)
TI_57178802   .e 166 to 802 46 to 685       638/685
(93 %)
15 diff
(97.9 %id)
BI518907 leukocyte .e 197 to 905 1 to 709   tiling clone,   709/709
(100 %)
1 diff
(99.9 %id)
TI_44459417   .e 197 to 905 68 to 776       709/776
(91 %)
8 diff
(99.0 %id)
BM465330 eye, retinoblastoma .e 522 to 1213 1 to 710       710/1048
(67 %)
8 diff
(99.3 %id)
TI_44459233   .e 614 to 1204 49 to 637       589/637
(92 %)
11 diff
(98.3 %id)
BI518824 leukocyte .e 621 to 1204 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
BI519478 leukocyte .e 697 to 1538 859 to 15       843/859
(98 %)
6 diff
(99.4 %id)
TI_44459235   .e 697 to 1538 859 to 15       843/859
(98 %)
6 diff
(99.4 %id)
BM826083 Ascites, stomach .e 703 to 1094 1 to 391       391/391
(100 %)
1 diff
(99.8 %id)
TI_1948085805   .e 704 to 1271 692 to 122       571/1447
(39 %)
14 diff
(99.1 %id)
BE784991 large cell carcinoma, lung .e 743 to 1520 1 to 777       777/1065
(72 %)
44 diff
(95.9 %id)
BQ229991 large cell carcinoma, lung .e 755 to 1353 1 to 600       600/942
(63 %)
11 diff
(98.9 %id)
BI764729 pooled colon, kidney, stomach .e 762 to 1225 1 to 469       469/598
(78 %)
12 diff
(98.0 %id)
BM918444 pooled pancreas and spleen .e 767 to 1587 1 to 831       831/965
(86 %)
20 diff
(98.0 %id)
BI519537 leukocyte .e 774 to 1529 795 to 1       795/795
(100 %)
47 diff
(94.1 %id)
TI_44459419   .e 774 to 1529 795 to 1       795/795
(100 %)
47 diff
(94.1 %id)
BG058675 blood, lymphocyte .e 1102 to 1600 502 to 4       499/502
(99 %)
0 diff
(100 %id)
AY763098   .f 1 to 1523 1 to 1523 N24S P83S tiling clone,   1523/1525
(99 %)
3 diff
(99.9 %id)
NM_001161443.1   .f 1 to 1522 1 to 1522 exact RefSeq, AAA   1522/1522
(100 %)
0 diff
(100 %id)
BQ934147 large cell carcinoma, lung .g 1 to 744 1 to 747   tiling clone,   747/928
(80 %)
23 diff
(97.6 %id)
AA063001 pineal gland .g 714 to 1283 566 to 1   tiling clone,   566/569
(99 %)
6 diff
(99.0 %id)
BM685926 eye, Retina Foveal and Macular .g 726 to 1282 8 to 565   tiling clone,   558/565
(98 %)
2 diff
(99.7 %id)
BM817769 stomach .h 1 to 623 1 to 623   tiling clone,   623/623
(100 %)
0 diff
(100 %id)
BM829634 stomach .h 5 to 374 1 to 370       370/370
(100 %)
4 diff
(99.0 %id)
CN349907 embryonic stem cells, cell lines H1, H7, andH9 .h 13 to 562 1 to 550       550/550
(100 %)
1 diff
(99.9 %id)
AW630148 2 pooled high-grade transitional celltumors, genitourinary tract .h 24 to 318 1 to 295       295/295
(100 %)
0 diff
(100 %id)
BE253512 eye, retinoblastoma .h 48 to 696 1 to 650 E3R D4G S5H H7P A8T ... tiling clone,   648/676
(95 %)
13 diff
(98.1 %id)
DA796438 brain .i 1 to 485 2 to 486 exact tiling clone, capped   485/485
(100 %)
0 diff
(100 %id)
BG831563 epithelioid carcinoma cell line, Pancreas .i 39 to 700 1 to 661 G7A tiling clone,   661/661
(100 %)
4 diff
(99.4 %id)
BI193381 epithelioid carcinoma cell line, Pancreas .i 39 to 730 1 to 691 G7V S8R A9P S11L L12S ...     691/691
(100 %)
4 diff
(99.5 %id)
CR977607 T-Lymphocytes .i 517 to 1323 1 to 808   tiling clone,   808/808
(100 %)
1 diff
(99.9 %id)
TI_57234296   .j 1 to 783 63 to 857 exact tiling clone,   795/981
(81 %)
26 diff
(97.4 %id)
BI907564 leukocyte .j 2 to 783 1 to 794 exact tiling clone,   794/918
(86 %)
20 diff
(97.9 %id)
BF379200 uterus_tumor .j 378 to 755 7 to 384   tiling clone,   378/384
(98 %)
6 diff
(98.5 %id)
AA380785   .k-u 1 to 324 1 to 327 E14X G16X E17* tiling clone,   327/330
(99 %)
6 diff
(98.2 %id)
BM919385 pooled pancreas and spleen Gene SH2D2A, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI