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Gene SEZ6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
150 supporting clones for gene SEZ6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA799688 brain .a 1 to 345 2 to 346   tiling clone, capped   345/345
(100 %)
0 diff
(100 %id)
AF502129 brain .a 153 to 4452 1 to 4306 Q78H P93S E143D S144P P147E ...     4306/4306
(100 %)
16 diff
(99.7 %id)
NM_178860.4   .a 235 to 4444 1 to 4210 exact RefSeq, AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 4210/4210
(100 %)
0 diff
(100 %id)
DA123986 cerebellum .a 236 to 743 2 to 509   capped   508/508
(100 %)
0 diff
(100 %id)
AY038048   .a 250 to 4444 1 to 4201 Q78H P93S E143D S144P P147E ... AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 4201/4201
(100 %)
15 diff
(99.7 %id)
AI815414 brain, frontal lobe .a 252 to 667 1 to 416       416/416
(100 %)
0 diff
(100 %id)
DA176585 amygdala .a 259 to 733 2 to 476   capped   475/483
(98 %)
1 diff
(99.8 %id)
DA501360 brain .a 266 to 533 2 to 270   capped   269/269
(100 %)
2 diff
(99.3 %id)
DA806416 brain .a 267 to 825 14 to 572   capped   559/571
(97 %)
5 diff
(99.2 %id)
DA109653 cerebellum .a 269 to 819 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA214271 brain .a 269 to 709 2 to 443   capped   442/442
(100 %)
1 diff
(99.8 %id)
AK223620 brain .a 273 to 3641 1 to 3369 F359L tiling clone,   3369/3369
(100 %)
1 diff
(100.0 %id)
DB472437 hippocampus .a 273 to 766 1 to 493       493/495
(99 %)
3 diff
(99.4 %id)
DB474024 hippocampus .a 273 to 450 1 to 178       178/178
(100 %)
0 diff
(100 %id)
DB477442 hippocampus .a 273 to 773 1 to 501       501/501
(100 %)
4 diff
(99.3 %id)
DB477476 hippocampus .a 273 to 772 1 to 501       501/501
(100 %)
17 diff
(96.7 %id)
DA799993 brain .a 274 to 817 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA098755 cerebellum .a 275 to 605 2 to 332   capped   331/331
(100 %)
1 diff
(99.7 %id)
DA107475 cerebellum .a 275 to 821 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA248077 brain .a 275 to 869 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
DA331887 hippocampus .a 275 to 862 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA795257 brain .a 275 to 592 2 to 319   capped   318/318
(100 %)
0 diff
(100 %id)
DA807523 brain .a 277 to 801 2 to 527   capped   526/526
(100 %)
1 diff
(99.9 %id)
DA106990 cerebellum .a 278 to 851 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA333064 hippocampus .a 283 to 854 2 to 576   capped   575/575
(100 %)
3 diff
(99.5 %id)
DA770436 brain .a 283 to 743 2 to 462   capped   461/461
(100 %)
1 diff
(99.8 %id)
CN285034 embryonic stem cells, cell lines H1, H7, andH9 .a 289 to 932 1 to 644       644/644
(100 %)
0 diff
(100 %id)
DA123388 cerebellum .a 308 to 847 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DR002125 fetal brain .a 342 to 966 9 to 635       627/635
(98 %)
8 diff
(98.8 %id)
DA339463 hippocampus .a 429 to 1000 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA117563 cerebellum .a 430 to 926 2 to 498   capped   497/497
(100 %)
1 diff
(99.8 %id)
DA126576 cerebellum .a 430 to 996 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA811751 brain .a 605 to 1170 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA809230 brain .a 636 to 1166 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DA797148 brain .a 784 to 1197 2 to 415   capped   414/414
(100 %)
0 diff
(100 %id)
DA811733 brain .a 784 to 1350 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA807221 brain .a 804 to 1355 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA530744 brain .a 826 to 1117 247 to 538   capped   292/537
(54 %)
12 diff
(97.8 %id)
DA769471 brain .a 932 to 1516 2 to 586   capped Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 585/585
(100 %)
0 diff
(100 %id)
DA414492 thalamus .a 961 to 1527 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA230465 brain .a 1027 to 1570 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA110586 cerebellum .a 1076 to 1633 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
T05695   .a 1080 to 1419 1 to 339       339/339
(100 %)
1 diff
(99.8 %id)
BG474183 eye, retinoblastoma .a 1102 to 1641 1 to 541       541/541
(100 %)
7 diff
(98.8 %id)
DA802679 brain .a 1104 to 1652 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA802725 brain .a 1104 to 1668 2 to 567   capped   566/568
(99 %)
2 diff
(99.7 %id)
DA797942 brain .a 1131 to 1671 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA499441 brain .a 1138 to 1716 2 to 580   capped   579/579
(100 %)
2 diff
(99.7 %id)
DA797108 brain .a 1141 to 1663 2 to 524   capped   523/523
(100 %)
1 diff
(99.9 %id)
DA119653 cerebellum .a 1260 to 1824 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA526280 brain .a 1284 to 1853 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA529065 brain .a 1373 to 1977 2 to 606   tiling clone, capped   605/605
(100 %)
0 diff
(100 %id)
DA270114 caudate nucleus .a 1377 to 1942 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA780138 brain .a 1393 to 1963 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
AA322718 brain, cerebellum .a 1431 to 1711 1 to 284       284/284
(100 %)
9 diff
(96.9 %id)
AA322958 brain, cerebellum .a 1431 to 1701 1 to 271       271/271
(100 %)
0 diff
(100 %id)
DA776500 brain .a 1573 to 2157 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
BU182103 eye, retinoblastoma .a 1658 to 2560 1 to 904       904/905
(99 %)
5 diff
(99.5 %id)
DA496933 brain .a 1840 to 2417 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DA484364 brain .a 1846 to 2306 2 to 462   capped   461/461
(100 %)
0 diff
(100 %id)
DA521579 brain .a 1846 to 2399 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA152418 amygdala .a 1847 to 2408 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA342917 substantia nigra .a 1869 to 2227 2 to 360   capped   359/359
(100 %)
0 diff
(100 %id)
AK055383 brain .a 1963 to 4395 1 to 2433   available from FLJ,   2433/2433
(100 %)
4 diff
(99.9 %id)
DA513989 brain .a 1964 to 2509 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
BX478743   .a 1981 to 2287 1 to 307       307/307
(100 %)
2 diff
(99.4 %id)
DA391043 thalamus .a 2029 to 2599 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA166239 amygdala .a 2046 to 2615 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
BE796905 lung, small cell carcinoma .a 2092 to 2910 1 to 813       813/928
(87 %)
20 diff
(97.9 %id)
DA503830 brain .a 2148 to 2701 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
BF530859 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2296 to 2991 1 to 690       690/997
(69 %)
15 diff
(98.5 %id)
BQ425190 eye, retinoblastoma .a 2339 to 3118 18 to 805       788/875
(90 %)
15 diff
(98.3 %id)
AK054913 cerebellum .a 2374 to 4444 1 to 2071   tiling clone, available from FLJ,   2071/2071
(100 %)
1 diff
(100.0 %id)
DA059579 cerebellum .a 2375 to 2921 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
BU165308 eye, retinoblastoma .a 2441 to 3229 12 to 807       791/858
(92 %)
30 diff
(96.6 %id)
BM021908 Islets of Langerhans, Pancreas .a 2480 to 2922 1 to 444       444/452
(98 %)
13 diff
(97.2 %id)
BQ228169 brain .a 2496 to 3249 21 to 789       769/937
(82 %)
34 diff
(96.4 %id)
F05862 brain, total brain .a 2526 to 2813 1 to 288       288/288
(100 %)
0 diff
(100 %id)
F07470 brain, total brain .a 2665 to 2892 1 to 228       228/228
(100 %)
3 diff
(98.7 %id)
F11386 brain, total brain .a 2750 to 3073 1 to 324       324/324
(100 %)
4 diff
(98.8 %id)
AA488106 whole brain .a 2751 to 3104 1 to 354       354/354
(100 %)
0 diff
(100 %id)
BE207202 lung, small cell carcinoma .a 2832 to 3286 1 to 454       454/459
(98 %)
15 diff
(96.8 %id)
BX461017 brain, fetal brain .a 2849 to 3760 1 to 918       696/918
(75 %)
28 diff
(97.0 %id)
DA133392 alzheimer cortex .a 2854 to 3418 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
R51725 whole brain .a 2870 to 3119 1 to 250     Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 250/292
(85 %)
4 diff
(98.7 %id)
R14779 whole brain .a 2872 to 3161 1 to 287       287/428
(67 %)
7 diff
(98.4 %id)
H29244 whole brain .a 2942 to 3380 1 to 442       442/471
(93 %)
15 diff
(96.9 %id)
AA338672 brain .a 3272 to 3536 1 to 268       271/268
(101 %)
6 diff
(97.8 %id)
AW966265   .a 3293 to 3807 1 to 512       512/516
(99 %)
17 diff
(96.8 %id)
R35934 whole brain .a 3381 to 3737 10 to 375     Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 366/426
(85 %)
17 diff
(96.1 %id)
BM127083 Islets of Langerhans, Pancreas .a 3394 to 3939 1 to 546     Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 546/546
(100 %)
4 diff
(99.3 %id)
TI_151734120   .a 3397 to 4120 778 to 56       723/1051
(68 %)
0 diff
(100 %id)
BC069260 Brain, neuroblastoma .a 3415 to 4444 1 to 1030   available from MGC, AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 1030/1030
(100 %)
5 diff
(99.6 %id)
BQ881701 brain, neuroblastoma, cell line .a 3416 to 4320 1 to 908   available from MGC,   908/908
(100 %)
18 diff
(98.1 %id)
DA107468 cerebellum .a 3607 to 4163 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
CV812558 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 3611 to 4464 861 to 1     Submitted on the opposite strand 861/895
(96 %)
23 diff
(97.5 %id)
BX431180 brain, fetal brain .a 3643 to 4250 7 to 616       610/616
(99 %)
1 diff
(99.9 %id)
BF366816 nervous_tumor .a 3719 to 3895 176 to 1       176/179
(98 %)
10 diff
(94.5 %id)
DB546051 hippocampus .a 3731 to 4444 1 to 710     Submitted on the opposite strand 710/710
(100 %)
8 diff
(98.9 %id)
DB316657 brain .a 3835 to 4395 562 to 1       562/562
(100 %)
1 diff
(99.9 %id)
BP398135 pancreatic islet .a 3944 to 4444 1 to 501     Submitted on the opposite strand 501/501
(100 %)
0 diff
(100 %id)
BX098980 whole brain .a 3953 to 4458 505 to 1       505/505
(100 %)
1 diff
(99.9 %id)
BE047009 pooled germ cell tumors .a 3954 to 4452 500 to 1       500/500
(100 %)
1 diff
(99.8 %id)
AI638508 pooled germ cell tumors .a 3955 to 4452 497 to 1       497/497
(100 %)
1 diff
(99.8 %id)
DB296878 cerebellum .a 3961 to 4444 484 to 1       484/490
(98 %)
1 diff
(99.8 %id)
BM126773 Islets of Langerhans, Pancreas .a 3963 to 4444 495 to 13   AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 483/483
(100 %)
1 diff
(99.8 %id)
AW149807 brain, medulloblastoma .a 3975 to 4449 476 to 1       476/476
(100 %)
5 diff
(99.0 %id)
DB541194 hippocampus .a 3976 to 4444 1 to 469     Submitted on the opposite strand 469/469
(100 %)
1 diff
(99.8 %id)
AI654790 pooled germ cell tumors .a 3987 to 4452 465 to 1       465/465
(100 %)
2 diff
(99.6 %id)
DB542816 hippocampus .a 3993 to 4444 1 to 452     Submitted on the opposite strand 452/452
(100 %)
2 diff
(99.6 %id)
H29245 whole brain .a 3997 to 4457 469 to 1       469/476
(98 %)
17 diff
(96.5 %id)
AW139057   .a 3998 to 4461 464 to 1       464/464
(100 %)
1 diff
(99.8 %id)
R44423 whole brain .a 4007 to 4452 469 to 1       469/476
(98 %)
30 diff
(93.7 %id)
AI569283 anaplastic oligodendroglioma, brain .a 4021 to 4432 415 to 4       412/415
(99 %)
0 diff
(100 %id)
BE504594 carcinoid, lung .a 4023 to 4449 427 to 1       427/427
(100 %)
1 diff
(99.8 %id)
BF432418 brain, glioblastoma (pooled) .a 4024 to 4444 421 to 1       421/421
(100 %)
1 diff
(99.8 %id)
AI419465 brain, glioblastoma (pooled) .a 4034 to 4448 415 to 1       415/415
(100 %)
0 diff
(100 %id)
BF594084 brain, glioblastoma (pooled) .a 4036 to 4445 410 to 1       410/410
(100 %)
0 diff
(100 %id)
BX435224 brain, fetal brain .a 4039 to 4394 426 to 69       358/549
(65 %)
0 diff
(100 %id)
CR736424   .a 4044 to 4458 415 to 1       415/415
(100 %)
2 diff
(99.6 %id)
R51648 whole brain .a 4061 to 4444 408 to 13   AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 396/398
(99 %)
16 diff
(96.0 %id)
BI966101 Islets of Langerhans, Pancreas .a 4086 to 4449 364 to 1       364/364
(100 %)
2 diff
(99.5 %id)
R42549 whole brain .a 4088 to 4459 393 to 1       393/402
(97 %)
24 diff
(94.1 %id)
DB546082 hippocampus .a 4103 to 4444 11 to 352     Submitted on the opposite strand 342/352
(97 %)
13 diff
(96.4 %id)
BM717496 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 4134 to 4471 1 to 338   tiling clone,   338/341
(99 %)
4 diff
(98.9 %id)
AI499775 anaplastic oligodendroglioma, brain .a 4135 to 4444 310 to 1       310/310
(100 %)
2 diff
(99.4 %id)
AI458144 pooled .a 4154 to 4446 293 to 1       293/293
(100 %)
0 diff
(100 %id)
DB325659 brain .a 4167 to 4444 305 to 28   AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 278/278
(100 %)
0 diff
(100 %id)
F09051 brain, total brain .a 4168 to 4444 276 to 1       276/276
(100 %)
2 diff
(99.3 %id)
Z40525 brain, total brain .a 4221 to 4444 224 to 1       224/224
(100 %)
1 diff
(99.6 %id)
R49451 whole brain .a 4248 to 4444 211 to 16   AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 196/196
(100 %)
3 diff
(98.5 %id)
F02105 brain, total brain .a 4253 to 4444 192 to 1       192/192
(100 %)
0 diff
(100 %id)
NM_001098635.1   .b 1 to 4193 2 to 4194 exact RefSeq, AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 4194/4194
(100 %)
0 diff
(100 %id)
AL834405 brain .b 255 to 4193 1 to 3939   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 3939/3939
(100 %)
0 diff
(100 %id)
H05353 whole brain .b 2948 to 3354 1 to 411       411/427
(96 %)
13 diff
(97.0 %id)
CK820017 Islets of Langerhans, Pancreas .b 3018 to 3338 1 to 321       321/321
(100 %)
0 diff
(100 %id)
BM354035 Islets of Langerhans, Pancreas .b 3034 to 3568 1 to 535       535/535
(100 %)
0 diff
(100 %id)
R90888 brain .b 3050 to 3522 1 to 481       481/483
(99 %)
17 diff
(96.5 %id)
R85125 brain .b 3050 to 3456 1 to 409       409/409
(100 %)
6 diff
(98.6 %id)
H51247 brain .b 3102 to 3448 1 to 349       349/359
(97 %)
8 diff
(97.8 %id)
BQ187837 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 3128 to 3750 1 to 622       622/622
(100 %)
1 diff
(99.9 %id)
H51217 brain .b 3783 to 4185 402 to 1       402/402
(100 %)
4 diff
(99.1 %id)
R85080 brain .b 3984 to 4188 211 to 8       204/222
(91 %)
0 diff
(100 %id)
DA723409   .c 1 to 563 2 to 564   tiling clone, capped   563/563
(100 %)
0 diff
(100 %id)
AK096473 brain .c 518 to 3960 1 to 3443   tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 3443/3443
(100 %)
1 diff
(100.0 %id)
DA062435 cerebellum .d 1 to 571 2 to 573   tiling clone, capped   572/572
(100 %)
1 diff
(99.9 %id)
AU310648 neuroblastoma .d 223 to 806 1 to 583   tiling clone, Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 583/583
(100 %)
1 diff
(99.9 %id)
CD580226 brain .d 731 to 1531 1 to 799   tiling clone,   799/803
(99 %)
20 diff
(97.6 %id)
AU310649 neuroblastoma .d 1208 to 1737 558 to 29   tiling clone, AAA Possibly primed on the genome, locally A rich (26/26 A in genome downstream of last aligned base) 530/530
(100 %)
0 diff
(100 %id)
AI936088 normal prostate, Prostate .e 1 to 601 611 to 12 P3S P4T R13G A14Q T15L ... tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 600/612
(98 %)
5 diff
(99.2 %id)
BF437729 Prostate .e 60 to 592 534 to 1   tiling clone,   534/534
(100 %)
15 diff
(97.2 %id)
DA806037 brain .f 1 to 567 2 to 570 G28W Y29L T30H C31L T32H ... tiling clone, capped   569/569
(100 %)
2 diff
(99.7 %id)
BF530977 anaplastic oligodendroglioma with 1p/19qloss, brain .g-u 1 to 595 1 to 594 S147R C148L A150R P151A A152R ... tiling clone,   594/960
(61 %)
11 diff
(98.9 %id)
CR603576 fetal brain .h 1 to 1500 1 to 1500 exact tiling clone,   1500/1500
(100 %)
0 diff
(100 %id)
DA511148 brain .i 1 to 561 2 to 562 exact tiling clone, capped   561/561
(100 %)
0 diff
(100 %id)
BF854989 prostate_normal .j-u 1 to 330 66 to 399 G63V K76Q G77A H80A L81S ... tiling clone,   337/452
(74 %)
10 diff
(97.8 %id)
AF502130 anaplastic oligodendroglioma Gene SEZ6, variant not shown       AAA This clone was ignored    
AK091522 brain Gene SEZ6, variant not shown       available from FLJ, This clone was ignored    
AK125377 brain Gene SEZ6, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AX747037   Gene SEZ6, variant not shown         This clone was ignored    
DB316029 brain Gene SEZ6, variant not shown         This clone was ignored    
DA504547 brain Gene SEZ6, variant not shown       capped This clone was ignored    
AI480182 anaplastic oligodendroglioma, brain Gene SEZ6, variant not shown         This clone was ignored    
AI500178 anaplastic oligodendroglioma, brain Gene SEZ6, variant not shown         This clone was ignored    
AI873131 anaplastic oligodendroglioma, brain Gene SEZ6, variant not shown         This clone was ignored    
DB325850 brain Gene SEZ6, variant not shown         Suspected internal deletion, this clone was ignored    
DA773319 brain Gene SEZ6, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g-u, .h, .i, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI