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Gene SEMA4ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
283 supporting clones for gene SEMA4A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC307489 cerebellum .a 1 to 574 1 to 574       574/574
(100 %)
1 diff
(99.9 %id)
DC316976 amygdala .a 1 to 532 1 to 532       532/532
(100 %)
0 diff
(100 %id)
DC319743 brain .a 1 to 596 1 to 596   tiling clone,   596/596
(100 %)
0 diff
(100 %id)
DC317591 amygdala .a 13 to 552 1 to 540       540/540
(100 %)
0 diff
(100 %id)
BG703963 brain, hippocampus .a 20 to 689 1 to 665   tiling clone,   665/667
(99 %)
12 diff
(98.3 %id)
BI550650 brain, hippocampus .a 27 to 767 1 to 743   tiling clone,   743/1119
(66 %)
18 diff
(98.4 %id)
DC310937 cerebellum .a 34 to 618 1 to 585       585/585
(100 %)
1 diff
(99.9 %id)
DC323170 brain .a 34 to 597 1 to 564       564/564
(100 %)
1 diff
(99.9 %id)
DC326698 caudate nucleus .a 34 to 581 1 to 549       549/554
(99 %)
2 diff
(99.7 %id)
DC316365 amygdala .a 35 to 546 1 to 513       513/513
(100 %)
1 diff
(99.9 %id)
BM691378 eye, RPE and Choroid .a 61 to 581 7 to 527     Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 521/532
(97 %)
8 diff
(98.5 %id)
CD631365   .a 86 to 194 106 to 1       106/106
(100 %)
3 diff
(97.2 %id)
BM662404 eye, RPE and Choroid .a 2870 to 3150 298 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 281/281
(100 %)
1 diff
(99.7 %id)
DA403658 thalamus .b 1 to 551 2 to 552   tiling clone, capped   551/551
(100 %)
0 diff
(100 %id)
DA789198 brain .b 2 to 581 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA241778 brain .b 4 to 573 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA249226 brain .b 4 to 607 2 to 605   capped   604/610
(99 %)
2 diff
(99.7 %id)
DA409501 thalamus .b 9 to 564 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
CD631361   .b 23 to 381 355 to 1       355/355
(100 %)
9 diff
(97.5 %id)
CD631362   .b 23 to 383 1 to 361       361/363
(99 %)
3 diff
(99.2 %id)
NM_022367.3   .b 45 to 3346 1 to 3302 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 3302/3302
(100 %)
0 diff
(100 %id)
DC345655 tongue, tumor tissue .b 53 to 641 1 to 589       589/589
(100 %)
0 diff
(100 %id)
BP314933 mammary gland .b 69 to 650 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DB212693 trachea .b 69 to 437 2 to 370   capped   369/369
(100 %)
0 diff
(100 %id)
DA459186 tongue, tumor tissue .b 78 to 594 2 to 518   capped   517/517
(100 %)
0 diff
(100 %id)
DA460378 tongue, tumor tissue .b 78 to 639 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DC347978 tongue, tumor tissue .b 82 to 646 1 to 565       565/565
(100 %)
2 diff
(99.7 %id)
DC347935 tongue, tumor tissue .b 88 to 653 1 to 566       566/566
(100 %)
0 diff
(100 %id)
DA621165 Kidney .b 89 to 573 2 to 486   capped   485/485
(100 %)
0 diff
(100 %id)
DC345831 tongue, tumor tissue .b 92 to 669 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
DC346050 tongue, tumor tissue .b 92 to 650 1 to 559       559/559
(100 %)
0 diff
(100 %id)
DC347574 tongue, tumor tissue .b 92 to 662 1 to 571       571/571
(100 %)
0 diff
(100 %id)
DA873611 Prostate .b 93 to 583 2 to 492   capped   491/491
(100 %)
0 diff
(100 %id)
DC346851 tongue, tumor tissue .b 96 to 647 1 to 552       552/552
(100 %)
3 diff
(99.5 %id)
DC317464 amygdala .b 99 to 640 1 to 542       542/542
(100 %)
0 diff
(100 %id)
DC345530 tongue, tumor tissue .b 99 to 677 1 to 580       580/583
(99 %)
8 diff
(98.7 %id)
DC345755 tongue, tumor tissue .b 99 to 670 1 to 573       573/575
(99 %)
2 diff
(99.7 %id)
DC345773 tongue, tumor tissue .b 99 to 648 1 to 551       551/551
(100 %)
1 diff
(99.9 %id)
DC346909 tongue, tumor tissue .b 99 to 676 1 to 578       578/578
(100 %)
0 diff
(100 %id)
DC347522 tongue, tumor tissue .b 99 to 662 1 to 565       565/565
(100 %)
1 diff
(99.9 %id)
DC347750 tongue, tumor tissue .b 99 to 669 1 to 571       571/571
(100 %)
0 diff
(100 %id)
DC347795 tongue, tumor tissue .b 99 to 667 1 to 569       569/569
(100 %)
0 diff
(100 %id)
DC348218 tongue, tumor tissue .b 99 to 652 1 to 554       554/554
(100 %)
0 diff
(100 %id)
BP314892 mammary gland .b 99 to 677 1 to 580       580/583
(99 %)
7 diff
(98.8 %id)
BP357544 mammary gland .b 99 to 679 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DC408867 thymus .b 99 to 648 1 to 552       552/552
(100 %)
2 diff
(99.7 %id)
DC415482 trachea .b 99 to 658 1 to 560       560/560
(100 %)
0 diff
(100 %id)
DC416924 trachea .b 99 to 661 1 to 563       563/563
(100 %)
0 diff
(100 %id)
DC403407 testis .b 105 to 680 1 to 577       577/577
(100 %)
2 diff
(99.7 %id)
BC020974 Colon, adenocarcinoma .b 111 to 3339 1 to 3229 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 3229/3229
(100 %)
1 diff
(100.0 %id)
CD631364   .b 111 to 383 8 to 282       275/283
(97 %)
11 diff
(96.2 %id)
CD631369   .b 111 to 383 7 to 280       274/281
(97 %)
5 diff
(98.3 %id)
CD631370   .b 111 to 382 272 to 1       272/278
(97 %)
5 diff
(98.3 %id)
BE868099 adenocarcinoma, colon .b 132 to 798 1 to 666       666/666
(100 %)
1 diff
(99.9 %id)
DC425993 tongue, tumor tissue .b 2810 to 3339 531 to 1       531/531
(100 %)
1 diff
(99.9 %id)
DA508826 brain .c 1 to 548 2 to 549   tiling clone, capped   548/548
(100 %)
0 diff
(100 %id)
DA301204 hippocampus .c 107 to 694 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA330711 hippocampus .c 107 to 663 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
NM_001193300.1   .c 150 to 3442 1 to 3293 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 3293/3293
(100 %)
0 diff
(100 %id)
DB215750 trachea .c 159 to 703 2 to 546   capped   545/553
(98 %)
0 diff
(100 %id)
DB204897 trachea .c 172 to 679 2 to 510   capped   509/509
(100 %)
4 diff
(99.3 %id)
DA447473 tongue, tumor tissue .c 175 to 669 2 to 496   capped   495/495
(100 %)
2 diff
(99.6 %id)
DA453368 tongue, tumor tissue .c 182 to 563 2 to 383   capped   382/382
(100 %)
0 diff
(100 %id)
BP315572 mammary gland .c 184 to 765 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DC417083 trachea .c 195 to 772 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
DC348272 tongue, tumor tissue .c 198 to 766 1 to 569       569/569
(100 %)
0 diff
(100 %id)
BP312657 mammary gland .c 201 to 782 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
AK315547 placenta .c 204 to 2689 1 to 2486 exact tiling clone,   2486/2486
(100 %)
1 diff
(100.0 %id)
DC345780 tongue, tumor tissue .c 204 to 759 1 to 557       557/557
(100 %)
1 diff
(99.9 %id)
DC346260 tongue, tumor tissue .c 204 to 775 1 to 572       572/572
(100 %)
0 diff
(100 %id)
DC348078 tongue, tumor tissue .c 204 to 761 1 to 558       558/558
(100 %)
0 diff
(100 %id)
BP314196 mammary gland .c 204 to 785 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP314893 mammary gland .c 204 to 784 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BP315573 mammary gland .c 204 to 786 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DC381327 placenta .c 204 to 765 1 to 562       562/562
(100 %)
0 diff
(100 %id)
DC415443 trachea .c 204 to 742 1 to 539       539/539
(100 %)
0 diff
(100 %id)
DB141678 thymus .c 205 to 733 2 to 531   capped   530/530
(100 %)
3 diff
(99.5 %id)
DC313933 amygdala .d 1 to 561 2 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DC332598 hippocampus .d 1 to 525 2 to 526   tiling clone,   526/526
(100 %)
0 diff
(100 %id)
NM_001193301.1   .d 1 to 3217 2 to 3218 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 3218/3218
(100 %)
0 diff
(100 %id)
DC352173 brain .d 68 to 622 1 to 555       555/555
(100 %)
0 diff
(100 %id)
AY358531   .d 75 to 3211 1 to 3137 exact tiling clone,   3137/3143
(99 %)
1 diff
(100.0 %id)
DC375298 brain .d 87 to 659 1 to 573       573/573
(100 %)
0 diff
(100 %id)
DC317367 amygdala .d 89 to 648 1 to 560       560/560
(100 %)
0 diff
(100 %id)
DC374721 brain .d 98 to 675 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
DC336646 substantia nigra .d 106 to 701 1 to 597       597/597
(100 %)
3 diff
(99.5 %id)
DC374103 brain .d 107 to 685 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
DC308644 cerebellum .d 108 to 700 1 to 594       594/594
(100 %)
4 diff
(99.4 %id)
DA951602 Spleen .d 149 to 725 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA991016 synovial membrane tissue from rheumatioidarthritis .d 149 to 676 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
DB126591 thymus .d 149 to 687 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DB134046 thymus .d 149 to 687 2 to 540   capped   539/539
(100 %)
1 diff
(99.9 %id)
DB140712 thymus .d 149 to 692 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DB149563 thymus .d 149 to 690 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DB155223 thymus .d 149 to 756 2 to 610   capped   609/609
(100 %)
1 diff
(99.9 %id)
DB155628 thymus .d 149 to 723 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB159810 thymus .d 149 to 750 2 to 603   capped   602/602
(100 %)
0 diff
(100 %id)
DB162156 thymus .d 149 to 722 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA678211   .d 150 to 746 2 to 598   capped   597/598
(99 %)
0 diff
(100 %id)
DA819505   .d 151 to 705 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA991255 synovial membrane tissue from rheumatioidarthritis .d 151 to 703 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
DA992784 synovial membrane tissue from rheumatioidarthritis .d 151 to 722 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA994718 synovial membrane tissue from rheumatioidarthritis .d 151 to 677 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
DB153535 thymus .d 151 to 732 2 to 583   capped   582/582
(100 %)
2 diff
(99.7 %id)
DB162137 thymus .d 151 to 733 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
BG684636 B-cells, primary B-cells from tonsils (cell line) .d 155 to 820 1 to 666       666/666
(100 %)
3 diff
(99.6 %id)
DB145978 thymus .d 162 to 707 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DB155133 thymus .d 165 to 744 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
BQ057192 lymph, lymphoma, cell line .d 166 to 985 1 to 821       821/974
(84 %)
11 diff
(98.9 %id)
CR623694 B cells (Ramos cell line) Cot 25-normalized .d 173 to 3177 1 to 3005 exact     3005/3005
(100 %)
0 diff
(100 %id)
BX384966   .d 173 to 1090 1 to 909       909/934
(97 %)
12 diff
(98.8 %id)
TI_1948142104   .d 177 to 862 130 to 816       687/1328
(51 %)
18 diff
(98.7 %id)
TI_1948142446   .d 177 to 987 125 to 934       810/1332
(60 %)
36 diff
(97.3 %id)
TI_1948142447   .d 177 to 1159 122 to 1096       975/1189
(82 %)
24 diff
(98.0 %id)
TI_1948142783   .d 177 to 988 126 to 937       812/1359
(59 %)
19 diff
(98.7 %id)
TI_1948142784   .d 177 to 1168 124 to 1122       999/1234
(80 %)
40 diff
(96.8 %id)
TI_1948143712   .d 177 to 988 125 to 934       810/1364
(59 %)
28 diff
(98.0 %id)
CV023527 mixed .d 179 to 859 1 to 681       681/681
(100 %)
7 diff
(99.0 %id)
BQ056228 lymph, lymphoma, cell line .d 180 to 990 1 to 813       813/951
(85 %)
10 diff
(99.0 %id)
CD631374   .d 390 to 1053 1 to 666       666/740
(90 %)
16 diff
(97.9 %id)
DA173666 amygdala .d 602 to 1137 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
DA451663 tongue, tumor tissue .d 611 to 1181 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA792749 brain .d 782 to 1391 2 to 611   capped   610/610
(100 %)
1 diff
(99.9 %id)
DA030400   .d 875 to 1441 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BX328255   .d 879 to 1770 1 to 894       894/897
(99 %)
9 diff
(99.0 %id)
DA803463 brain .d 891 to 1428 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
CD631373   .d 936 to 1691 763 to 5       759/763
(99 %)
8 diff
(99.0 %id)
DB118886 thymus .d 944 to 1517 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB121519 thymus .d 961 to 1513 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BM806752 lymph, lymphoma, cell line .d 1000 to 1774 1 to 783       783/1066
(73 %)
19 diff
(98.3 %id)
DA718487   .d 1038 to 1604 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
CD631372   .d 1122 to 1830 1 to 705       705/706
(99 %)
5 diff
(99.3 %id)
EC538865 Prostate .d 1194 to 1312 119 to 1       119/119
(100 %)
0 diff
(100 %id)
BP346261 synovial membrane .d 1198 to 1777 1 to 580       580/580
(100 %)
0 diff
(100 %id)
BP305311   .d 1203 to 1783 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
TI_154185736   .d 1275 to 2040 109 to 859       751/937
(80 %)
23 diff
(97.6 %id)
TI_1948142448   .d 1306 to 2463 1268 to 128       1141/1279
(89 %)
54 diff
(95.8 %id)
BP292524 lung .d 1322 to 1871 1 to 550       550/550
(100 %)
6 diff
(99.0 %id)
AK022349 mammary gland .d 1373 to 3210 1 to 1838   available from FLJ,   1838/1838
(100 %)
2 diff
(99.9 %id)
AU122156 mammary gland .d 1374 to 2138 2 to 773   capped   772/774
(99 %)
14 diff
(98.2 %id)
BQ335891 marrow .d 1389 to 1726 346 to 7       340/346
(98 %)
2 diff
(99.5 %id)
BQ707628 Spleen .d 1389 to 2198 1 to 819       819/970
(84 %)
26 diff
(97.4 %id)
BQ883972 Spleen .d 1389 to 2277 1 to 898       898/912
(98 %)
25 diff
(97.3 %id)
BX350606   .d 1446 to 2364 919 to 5       915/922
(99 %)
5 diff
(99.5 %id)
EC523455 Prostate .d 1455 to 1550 1 to 95       95/95
(100 %)
1 diff
(99.0 %id)
TI_1948142106   .d 1497 to 2463 1095 to 128       968/1307
(74 %)
17 diff
(98.7 %id)
Z43916 brain, total brain .d 1551 to 1876 1 to 327       327/327
(100 %)
11 diff
(96.7 %id)
TI_1948142786   .d 1565 to 2463 1039 to 136       902/1384
(65 %)
17 diff
(98.8 %id)
CD107028 brain, Pituitary .d 1578 to 2428 27 to 887       861/892
(96 %)
29 diff
(96.8 %id)
BX390196 Neuroblastoma Cot 50-normalized .d 1609 to 2552 1 to 944       944/944
(100 %)
26 diff
(97.3 %id)
TI_1948142107   .d 1609 to 2463 985 to 137       849/1303
(65 %)
27 diff
(98.0 %id)
TI_1948142449   .d 1612 to 2463 986 to 132       855/1254
(68 %)
10 diff
(99.3 %id)
H08023 whole brain .d 1654 to 2117 1 to 468       468/473
(98 %)
14 diff
(97.1 %id)
CU454661 epidermis .d 1682 to 1875 11 to 204       194/212
(91 %)
12 diff
(94.4 %id)
TI_1948142785   .d 1685 to 2463 910 to 127       784/1354
(57 %)
18 diff
(98.7 %id)
AU147813 mammary gland .d 2650 to 3210 564 to 1       564/565
(99 %)
15 diff
(97.4 %id)
DB295779   .d 2675 to 3210 538 to 1       538/538
(100 %)
3 diff
(99.5 %id)
BF838759 head_neck .e 1 to 106 7 to 113   tiling clone,   107/124
(86 %)
2 diff
(98.4 %id)
AB029394   .e 38 to 3286 1 to 3252 C293S T294A Q295P P296S G297R ... tiling clone,   3252/3252
(100 %)
5 diff
(99.9 %id)
DC296873   .e 149 to 701 1 to 553       553/553
(100 %)
0 diff
(100 %id)
DC429397   .e 176 to 769 1 to 594       594/594
(100 %)
0 diff
(100 %id)
DC409855 thymus .e 201 to 786 1 to 586       586/586
(100 %)
2 diff
(99.7 %id)
DC391015 Spleen .e 205 to 768 1 to 564       564/564
(100 %)
2 diff
(99.7 %id)
DC409123 thymus .e 205 to 755 1 to 552       552/552
(100 %)
1 diff
(99.9 %id)
DC409282 thymus .e 206 to 739 1 to 534       534/534
(100 %)
2 diff
(99.7 %id)
DC428977   .e 207 to 776 1 to 570       570/570
(100 %)
0 diff
(100 %id)
DC410316 thymus .e 207 to 794 1 to 588   tiling clone,   588/588
(100 %)
0 diff
(100 %id)
DC410354 thymus .e 207 to 794 1 to 588       588/588
(100 %)
1 diff
(99.9 %id)
AW298440   .e 2002 to 2311 343 to 34   AAA   310/339
(91 %)
0 diff
(100 %id)
BP312448 mammary gland .e 2050 to 2632 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
CA393520 eye, RPE/choroid .e 2085 to 2612 1 to 528       528/528
(100 %)
0 diff
(100 %id)
BE155671 head_neck .e 2147 to 2487 13 to 354       342/354
(96 %)
6 diff
(98.4 %id)
BX363741   .e 2165 to 3244 1064 to 1       1064/1064
(100 %)
20 diff
(98.2 %id)
R81743 placenta .e 2226 to 2654 1 to 441       441/465
(94 %)
21 diff
(95.5 %id)
BX112994 placenta .e 2227 to 3022 1 to 796       796/801
(99 %)
3 diff
(99.7 %id)
BF154829 breast .e 2247 to 2672 456 to 27       430/459
(93 %)
0 diff
(100 %id)
BG949399 breast .e 2247 to 2672 456 to 27       430/459
(93 %)
0 diff
(100 %id)
BM694992 eye, human retina .e 2404 to 2839 1 to 436   fully sequenced, Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 436/436
(100 %)
0 diff
(100 %id)
BF882607 lung_tumor .e 2427 to 2883 1 to 454       454/465
(97 %)
6 diff
(98.8 %id)
AW965845   .e 2433 to 3048 1 to 616       616/621
(99 %)
12 diff
(98.1 %id)
T34380 lung .e 2433 to 2735 1 to 307       307/307
(100 %)
11 diff
(96.5 %id)
BF882611 lung_tumor .e 2437 to 2886 449 to 3     Submitted on the opposite strand 447/454
(98 %)
0 diff
(100 %id)
BF882612 lung_tumor .e 2437 to 2874 3 to 439       437/443
(98 %)
4 diff
(99.1 %id)
AA481246 germinal center B cell .e 2439 to 2969 1 to 530     Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 530/530
(100 %)
19 diff
(96.5 %id)
BI481387 Native Retinal Pigment Epithelium sheets, retina .e 2470 to 3001 5 to 540       536/544
(98 %)
9 diff
(98.4 %id)
T19441   .e 2479 to 2837 1 to 360       360/360
(100 %)
1 diff
(99.8 %id)
CB243787 Human Lung Epithelial cells, lung .e 2499 to 3277 797 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 779/779
(100 %)
2 diff
(99.8 %id)
AA193482 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 2526 to 2861 1 to 336       336/338
(99 %)
11 diff
(96.8 %id)
CA311774 Human Lung Epithelial cells, lung .e 2656 to 3277 640 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 622/622
(100 %)
1 diff
(99.9 %id)
BU632880 cell lines, Chondrosarcoma .e 2660 to 3277 634 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 616/616
(100 %)
3 diff
(99.6 %id)
TI_149306327   .e 2682 to 3280 688 to 90   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 599/970
(61 %)
3 diff
(99.7 %id)
BU686374 lung, Primary Lung Epithelial Cells .e 2682 to 3280 617 to 19   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 599/600
(99 %)
3 diff
(99.5 %id)
CK819350 Islets of Langerhans, Pancreas .e 2718 to 3236 1 to 519       519/519
(100 %)
7 diff
(98.7 %id)
BE182018 head_neck .e 2723 to 3024 16 to 318       303/318
(95 %)
10 diff
(96.9 %id)
BM128651 Islets of Langerhans, Pancreas .e 2734 to 3278 1 to 545       545/547
(99 %)
1 diff
(99.9 %id)
AI817099 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .e 2782 to 3282 503 to 2       502/503
(99 %)
0 diff
(100 %id)
BX372943 Neuroblastoma Cot 50-normalized .e 2789 to 3220 431 to 1       431/537
(80 %)
24 diff
(95.6 %id)
DB575582 hypothalamus .e 2791 to 3284 1 to 494     Submitted on the opposite strand 494/494
(100 %)
3 diff
(99.4 %id)
BM666780 eye, human retina .e 2809 to 3277 487 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 469/469
(100 %)
0 diff
(100 %id)
T34379 lung .e 2820 to 3281 462 to 1       462/468
(98 %)
6 diff
(98.8 %id)
AI291110 carcinoid, lung .e 2821 to 3278 457 to 1       457/457
(100 %)
10 diff
(97.9 %id)
BM691301 eye, RPE and Choroid .e 2823 to 3278 1 to 456       456/490
(93 %)
6 diff
(98.8 %id)
AI568200 lymph node, lymphoma, follicular mixed small and largecell .e 2828 to 3277 450 to 1       450/450
(100 %)
1 diff
(99.8 %id)
AA554541 breast .e 2837 to 3278 441 to 1       441/441
(100 %)
3 diff
(99.4 %id)
AA973640 carcinoid, lung .e 2839 to 3278 440 to 1       440/440
(100 %)
2 diff
(99.6 %id)
AI623385 adenocarcinoma, Pancreas .e 2847 to 3281 449 to 12   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 438/438
(100 %)
4 diff
(99.1 %id)
AW593031 pooled .e 2851 to 3219 369 to 1       369/369
(100 %)
1 diff
(99.8 %id)
AI017230 pooled .e 2867 to 3278 415 to 4       412/415
(99 %)
0 diff
(100 %id)
DB559151 hypothalamus .e 2871 to 3284 1 to 419     Submitted on the opposite strand 419/419
(100 %)
23 diff
(94.6 %id)
CR736197   .e 2877 to 3158 1 to 282       282/285
(98 %)
2 diff
(99.3 %id)
AA419534.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 2878 to 3245 1 to 368     also hits gene yotora 368/368
(100 %)
3 diff
(99.2 %id)
AI221749 pooled .e 2880 to 3285 405 to 1       405/405
(100 %)
1 diff
(99.8 %id)
AA761091 germinal center B cell .e 2883 to 3284 412 to 12   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 401/401
(100 %)
3 diff
(99.3 %id)
BQ336149 marrow .e 2905 to 3356 1 to 449   tiling clone,   449/449
(100 %)
6 diff
(98.7 %id)
BP396408 pancreatic islet .e 2906 to 3278 1 to 373     Submitted on the opposite strand 373/376
(99 %)
1 diff
(99.8 %id)
R81500 placenta .e 2918 to 3249 333 to 1       333/343
(97 %)
10 diff
(97.1 %id)
AI682007 serous papillary carcinoma, high grade, 2pooled tumors, uterus .e 2921 to 3278 358 to 3       356/358
(99 %)
0 diff
(100 %id)
AI221756 pooled .e 2923 to 3285 363 to 1       363/363
(100 %)
1 diff
(99.8 %id)
AW628784 pooled .e 2928 to 3277 353 to 1       353/353
(100 %)
5 diff
(98.6 %id)
CK819349 Islets of Langerhans, Pancreas .e 2950 to 3278 330 to 2       329/330
(99 %)
0 diff
(100 %id)
AA687813 normal prostate, Prostate .e 2969 to 3278 310 to 1       310/310
(100 %)
1 diff
(99.7 %id)
T19440   .e 2975 to 3277 303 to 1       303/303
(100 %)
3 diff
(99.1 %id)
Z39973 brain, total brain .e 2995 to 3275 281 to 1       281/281
(100 %)
1 diff
(99.7 %id)
AI698802 pooled .e 3021 to 3278 259 to 4       256/259
(98 %)
0 diff
(100 %id)
BI002468 head_normal .e 3052 to 3151 1 to 100       100/100
(100 %)
1 diff
(99.0 %id)
AA588098 colon, colon tumor RER+ .e 3057 to 3282 231 to 6       226/231
(97 %)
0 diff
(100 %id)
AA971074 pooled .e 3063 to 3277 226 to 12   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 215/215
(100 %)
0 diff
(100 %id)
AA481169 germinal center B cell .e 3064 to 3277 224 to 11   AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 214/214
(100 %)
3 diff
(98.6 %id)
D45630 lung .e 3117 to 3278 1 to 162     Submitted on the opposite strand 162/164
(98 %)
3 diff
(98.2 %id)
BX367243   .f 1 to 834 1 to 835   tiling clone,   835/960
(86 %)
16 diff
(98.4 %id)
BX367242   .f 1986 to 3024 1049 to 11   tiling clone,   1039/1108
(93 %)
0 diff
(100 %id)
AK091127 tongue, tumor tissue .g 1 to 2981 1 to 2981 D509G tiling clone, available from FLJ,   2981/2981
(100 %)
3 diff
(99.9 %id)
AX746794   .g 1 to 2981 1 to 2981 D509G     2981/2981
(100 %)
3 diff
(99.9 %id)
NM_001193302.1   .g 1 to 2988 1 to 2988 exact RefSeq, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 2988/2988
(100 %)
0 diff
(100 %id)
DA435087 tongue, tumor tissue .g 2 to 571 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DB313336 tongue, tumor tissue .g 2433 to 2981 551 to 1       551/552
(99 %)
3 diff
(99.5 %id)
DA144602 amygdala .h 1 to 468 2 to 468   tiling clone, capped   467/467
(100 %)
5 diff
(99.0 %id)
DA221564 brain .h 11 to 542 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DA411130 thalamus .h 13 to 611 2 to 600   tiling clone, capped   599/599
(100 %)
0 diff
(100 %id)
CA454892   .h 144 to 1027 1 to 888   tiling clone,   888/917
(96 %)
11 diff
(98.9 %id)
BG618720 Liver .h 961 to 1569 1 to 610   tiling clone,   610/610
(100 %)
3 diff
(99.6 %id)
BG685741 B-cells, primary B-cells from tonsils (cell line) .i 1 to 687 1 to 695   tiling clone,   695/695
(100 %)
9 diff
(98.8 %id)
BX376660 Neuroblastoma Cot 50-normalized .i 29 to 979 1 to 947 A35X L37X H47X V51S F52S ... tiling clone,   947/958
(98 %)
19 diff
(98.1 %id)
DC327060 caudate nucleus .j 1 to 556 1 to 556   tiling clone,   556/556
(100 %)
1 diff
(99.9 %id)
DC325972 caudate nucleus .j 22 to 599 1 to 578       578/578
(100 %)
0 diff
(100 %id)
DN997883 breast cancer, Mammary gland (cancer tissue) .j 83 to 592 1 to 510       510/510
(100 %)
3 diff
(99.5 %id)
BQ356019 head_neck .j 110 to 634 527 to 3   tiling clone,   525/536
(97 %)
0 diff
(100 %id)
CN255816 embryonic stem cells, cell lines H1, H7, andH9 .j 150 to 435 1 to 286       286/286
(100 %)
1 diff
(99.7 %id)
AW836429 leiomios .j 170 to 623 513 to 60       454/562
(80 %)
3 diff
(99.5 %id)
BQ356020 head_neck .j 192 to 635 444 to 1       444/444
(100 %)
1 diff
(99.8 %id)
CV374906 head_neck .j 194 to 621 455 to 23     Submitted on the opposite strand 431/456
(94 %)
26 diff
(94.3 %id)
BQ356179 head_neck .j 221 to 623 464 to 65       403/464
(86 %)
6 diff
(98.8 %id)
AI141990 pooled .j 608 to 1072 469 to 5   tiling clone,   465/469
(99 %)
0 diff
(100 %id)
TI_57244130   .k -8 to 576 25 to 609       585/609
(96 %)
6 diff
(99.1 %id)
BI914790 brain .k 1 to 576 1 to 576   tiling clone,   576/576
(100 %)
0 diff
(100 %id)
CD631371   .k 257 to 1077 819 to 1   tiling clone,   819/819
(100 %)
14 diff
(98.3 %id)
TI_154160315   .l 1 to 547 85 to 636   tiling clone,   551/552
(99 %)
33 diff
(94.1 %id)
DC350438 brain .l 237 to 801 1 to 566   tiling clone,   566/566
(100 %)
1 diff
(99.9 %id)
DC316934 amygdala .l 345 to 910 1 to 566   tiling clone,   566/566
(100 %)
0 diff
(100 %id)
DC346605 tongue, tumor tissue .m 1 to 575 1 to 575 exact tiling clone,   575/575
(100 %)
0 diff
(100 %id)
DC366730   .n 1 to 561 1 to 561 exact tiling clone,   561/562
(99 %)
1 diff
(99.9 %id)
DA916525 small intestine .o 1 to 557 2 to 558   tiling clone, capped   557/557
(100 %)
0 diff
(100 %id)
AW504223 lymph .o 25 to 330 8 to 313       306/313
(97 %)
6 diff
(98.1 %id)
CN255817 embryonic stem cells, cell lines H1, H7, andH9 .o 527 to 1251 1 to 725   tiling clone,   727/727
(100 %)
1 diff
(99.9 %id)
DB489597 hypothalamus .p 1 to 465 1 to 467   tiling clone,   467/467
(100 %)
17 diff
(96.4 %id)
DB504340 hypothalamus .p 1 to 478 1 to 478   tiling clone,   478/484
(98 %)
3 diff
(99.4 %id)
BG716692 brain, hypothalamus .p 1 to 658 1 to 672 R4L S5Q L6P P7S E8R ... tiling clone,   672/724
(92 %)
35 diff
(95.2 %id)
AK022416 mammary gland .q 1 to 2404 2 to 2405 exact tiling clone, available from FLJ,   2405/2405
(100 %)
0 diff
(100 %id)
AU122411 mammary gland .q 1 to 718 2 to 718   capped   717/720
(99 %)
6 diff
(99.2 %id)
AU147993 mammary gland .q 1852 to 2404 556 to 1       556/557
(99 %)
14 diff
(97.5 %id)
DW441390 Liver .q 2232 to 2413 17 to 198   tiling clone, AAA Possibly primed on the genome, locally A rich (17/17 A in genome downstream of last aligned base) 182/199
(91 %)
1 diff
(99.5 %id)
DC378569   .r 1 to 578 1 to 579 exact tiling clone,   579/579
(100 %)
1 diff
(99.9 %id)
DA418377 thalamus .s 1 to 555 2 to 557 W103V P104A A105S S106Q D107* tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
AA584443 pheochromocytoma .t 1 to 395 51 to 445   tiling clone, Submitted on the opposite strand 395/445
(88 %)
6 diff
(98.7 %id)
BP357148 mammary gland .t 288 to 870 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DC346531 tongue, tumor tissue .t 329 to 895 1 to 567   tiling clone,   567/567
(100 %)
0 diff
(100 %id)
DC348049 tongue, tumor tissue .t 335 to 891 1 to 559       559/559
(100 %)
2 diff
(99.7 %id)
DC394489 esophageal, tumor tissue .t 350 to 918 1 to 570 G75R Q76P S77K F79L D80* tiling clone,   570/570
(100 %)
1 diff
(99.9 %id)
DA451181 tongue, tumor tissue .u 1 to 541 2 to 542 exact tiling clone, capped   541/541
(100 %)
0 diff
(100 %id)
BP250593 hippocampus .va 1 to 579 1 to 578   tiling clone,   578/582
(99 %)
2 diff
(99.7 %id)
AA601686 pheochromocytoma .va 553 to 811 1 to 258   tiling clone, Submitted on the opposite strand 258/258
(100 %)
9 diff
(96.6 %id)
CV571590 cornea, eye .vb-u 1 to 586 1 to 586 exact tiling clone,   586/586
(100 %)
1 diff
(99.9 %id)
DB089990 testis .vc 1 to 561 2 to 562 exact tiling clone, capped   561/561
(100 %)
0 diff
(100 %id)
DA810315 brain .vd 1 to 557 2 to 558 exact tiling clone, capped   557/557
(100 %)
0 diff
(100 %id)
DA320219 hippocampus .ve 1 to 539 2 to 541 exact tiling clone, capped   540/540
(100 %)
1 diff
(99.9 %id)
AK290353 tongue, tumor tissue Gene SEMA4A, variant not shown         Suspected internal deletion, this clone was ignored    
AK296693 tongue, tumor tissue Gene SEMA4A, variant not shown         Suspected internal deletion, this clone was ignored    
BI000873 head_normal Gene SEMA4A, variant not shown              
BQ356018 head_neck Gene SEMA4A, variant not shown         This clone was ignored    
BX640891 salivary gland Gene SEMA4A, variant not shown       available from DKFZ, AAA Suspected internal deletion, this clone was ignored    
DC345526 tongue, tumor tissue Gene SEMA4A, variant not shown         Suspected internal deletion, this clone was ignored    
DC347567 tongue, tumor tissue Gene SEMA4A, variant not shown         Suspected internal deletion, this clone was ignored    
DC347961 tongue, tumor tissue Gene SEMA4A, variant not shown         Suspected internal deletion, this clone was ignored    
TI_1948142105   Gene SEMA4A, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb-u, .vc, .vd, .ve, .vf-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI