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Gene SEMA3ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
116 supporting clones for gene SEMA3A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC367614   SEMA3A.a 1 to 388 7 to 392   tiling clone,   392/399
(98 %)
2 diff
(99.5 %id)
DC382111 placenta SEMA3A.a 1 to 300 7 to 302       302/302
(100 %)
5 diff
(98.4 %id)
DC377051 brain SEMA3A.a 1 to 339 2 to 342   tiling clone,   342/342
(100 %)
2 diff
(99.5 %id)
DC372699   SEMA3A.a 51 to 577 1 to 526       526/526
(100 %)
3 diff
(99.5 %id)
AK289954 hippocampus SEMA3A.a 144 to 3398 1 to 3256 N281S H712R tiling clone,   3256/3256
(100 %)
4 diff
(99.9 %id)
DC332095 hippocampus SEMA3A.a 144 to 720 1 to 577       577/577
(100 %)
0 diff
(100 %id)
DC352128 brain SEMA3A.a 145 to 722 1 to 579       579/580
(99 %)
3 diff
(99.5 %id)
BU186364 large cell carcinoma, lung SEMA3A.a 147 to 662 3 to 520       518/896
(57 %)
13 diff
(98.6 %id)
DC370535   SEMA3A.a 163 to 341 1 to 180       180/186
(96 %)
2 diff
(99.0 %id)
DC374774 brain SEMA3A.a 168 to 738 1 to 569       569/569
(100 %)
4 diff
(99.3 %id)
DC352171 brain SEMA3A.a 198 to 750 1 to 555       555/555
(100 %)
1 diff
(99.9 %id)
DC375223 brain SEMA3A.a 224 to 759 1 to 536       536/536
(100 %)
2 diff
(99.7 %id)
BX491494   SEMA3A.a 230 to 734 28 to 535     Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 508/535
(94 %)
6 diff
(98.9 %id)
NM_006080.2   SEMA3A.a 237 to 5889 1 to 5653 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 5653/5653
(100 %)
0 diff
(100 %id)
DC369332   SEMA3A.a 339 to 617 1 to 279       279/279
(100 %)
0 diff
(100 %id)
DC350315 brain SEMA3A.a 366 to 943 1 to 578       578/578
(100 %)
0 diff
(100 %id)
DC374560 brain SEMA3A.a 373 to 947 1 to 575       575/575
(100 %)
0 diff
(100 %id)
DC375824 brain SEMA3A.a 373 to 916 1 to 544       544/544
(100 %)
0 diff
(100 %id)
DC375424 brain SEMA3A.a 380 to 758 1 to 379       379/379
(100 %)
2 diff
(99.5 %id)
DC376501 brain SEMA3A.a 385 to 880 1 to 498       496/498
(99 %)
4 diff
(99.2 %id)
DC374412 brain SEMA3A.a 389 to 880 1 to 492       492/492
(100 %)
0 diff
(100 %id)
CN295126 embryonic stem cells, cell lines H1, H7, andH9 SEMA3A.a 392 to 1017 8 to 633       626/633
(98 %)
6 diff
(99.1 %id)
DC367898   SEMA3A.a 397 to 714 1 to 318       318/318
(100 %)
1 diff
(99.7 %id)
DR002146 fetal brain SEMA3A.a 406 to 1137 8 to 739       732/739
(99 %)
6 diff
(99.2 %id)
DC374754 brain SEMA3A.a 411 to 992 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DC301988   SEMA3A.a 498 to 1005 1 to 508       508/533
(95 %)
2 diff
(99.7 %id)
DC376769 brain SEMA3A.a 500 to 1024 1 to 525       525/525
(100 %)
2 diff
(99.7 %id)
DC376234 brain SEMA3A.a 520 to 758 1 to 239       239/239
(100 %)
0 diff
(100 %id)
BC111416 PCR rescued clones SEMA3A.a 545 to 2917 8 to 2380 exact     2373/2380
(99 %)
7 diff
(99.8 %id)
L26081 brain SEMA3A.a 545 to 3064 9 to 2529 exact tiling clone,   2521/2530
(99 %)
3 diff
(99.9 %id)
DA776806 brain SEMA3A.a 564 to 1142 2 to 582   capped   581/581
(100 %)
2 diff
(99.7 %id)
DA788916 brain SEMA3A.a 594 to 1165 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BI870437 adenocarcinoma, cell line, Liver SEMA3A.a 806 to 1528 1 to 723       723/723
(100 %)
0 diff
(100 %id)
TI_57230915   SEMA3A.a 806 to 1528 47 to 769       723/723
(100 %)
0 diff
(100 %id)
CN295127 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 SEMA3A.a 836 to 1135 1 to 300       300/300
(100 %)
1 diff
(99.7 %id)
DA512171 brain SEMA3A.a 1017 to 1518 2 to 503   capped   502/502
(100 %)
0 diff
(100 %id)
T29595 lung SEMA3A.a 1475 to 1703 1 to 230       230/231
(99 %)
5 diff
(97.9 %id)
CD216784 lung SEMA3A.a 1780 to 2289 1 to 510       510/510
(100 %)
2 diff
(99.7 %id)
BG315503   SEMA3A.a 1828 to 1951 1 to 124       124/124
(100 %)
6 diff
(95.2 %id)
DA479829   SEMA3A.a 1878 to 2431 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BX283116 brain, primitive neuroectoderm SEMA3A.a 1947 to 2328 1 to 382       382/382
(100 %)
0 diff
(100 %id)
BF667677 brain, primitive neuroectoderm SEMA3A.a 1947 to 2626 1 to 677       677/889
(76 %)
25 diff
(97.2 %id)
ES316034 melanoma cell line SEMA3A.a 2158 to 2660 540 to 38     Submitted on the opposite strand 503/540
(93 %)
0 diff
(100 %id)
BF700780 brain, primitive neuroectoderm SEMA3A.a 2262 to 2808 46 to 588       546/884
(61 %)
19 diff
(97.9 %id)
BM723807 eye, fetal eye SEMA3A.a 2272 to 2972 1 to 702       702/702
(100 %)
4 diff
(99.5 %id)
BM711125 eye, fetal eyes SEMA3A.a 2316 to 2877 1 to 562   fully sequenced,   562/562
(100 %)
0 diff
(100 %id)
R19784 whole brain SEMA3A.a 2352 to 2555 1 to 205       205/210
(97 %)
2 diff
(99.1 %id)
CA395261 eye, RPE/choroid SEMA3A.a 2616 to 3112 1 to 497       497/497
(100 %)
5 diff
(99.0 %id)
BQ018643 lung, Metastatic Chondrosarcoma SEMA3A.a 2670 to 3398 747 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 729/729
(100 %)
0 diff
(100 %id)
BX510254   SEMA3A.a 2697 to 3398 721 to 20   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 702/702
(100 %)
4 diff
(99.5 %id)
BF667143 brain, primitive neuroectoderm SEMA3A.a 2702 to 3380 1 to 666       666/839
(79 %)
21 diff
(97.5 %id)
BQ447821 Knee, Osteoarthritic Cartilage SEMA3A.a 2718 to 3410 692 to 1       692/692
(100 %)
3 diff
(99.6 %id)
BX282800 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus SEMA3A.a 2802 to 3394 1 to 597       597/598
(99 %)
11 diff
(98.2 %id)
CR741663   SEMA3A.a 2802 to 3394 1 to 597       597/598
(99 %)
11 diff
(98.2 %id)
AA424316 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus SEMA3A.a 2802 to 3173 1 to 371   fully sequenced,   371/371
(100 %)
5 diff
(98.7 %id)
BM670627 eye, fetal eyes SEMA3A.a 2847 to 3416 570 to 1   fully sequenced,   570/570
(100 %)
3 diff
(99.5 %id)
CF597187 ovary SEMA3A.a 2981 to 3728 1 to 749   tiling clone,   749/752
(99 %)
7 diff
(99.1 %id)
AA716143 heart SEMA3A.a 3011 to 3404 394 to 1       394/394
(100 %)
1 diff
(99.8 %id)
EB362352 eye, lens SEMA3A.a 3020 to 3379 359 to 1       359/363
(98 %)
1 diff
(99.8 %id)
AA861394   SEMA3A.a 3028 to 3401 374 to 1       374/374
(100 %)
0 diff
(100 %id)
BU729715 eye, Retina Foveal and Macular SEMA3A.a 3072 to 3565 513 to 20   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 494/494
(100 %)
2 diff
(99.6 %id)
AA451750 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus SEMA3A.a 3143 to 3398 256 to 1   fully sequenced,   256/256
(100 %)
1 diff
(99.7 %id)
AI886428 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus SEMA3A.a 3448 to 3558 118 to 8       111/118
(94 %)
0 diff
(100 %id)
DA505776 brain SEMA3A.a 3486 to 4054 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
AA476741.
matches multiple genes
  SEMA3A.a 3529 to 4032 1 to 504     also hits gene snorduby 504/504
(100 %)
3 diff
(99.5 %id)
CX871967 embryonic stem SEMA3A.a 3580 to 4305 1 to 726   tiling clone,   726/726
(100 %)
2 diff
(99.8 %id)
AA451651   SEMA3A.a 3678 to 3928 1 to 253     Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 253/253
(100 %)
7 diff
(97.3 %id)
EB361098 eye, lens SEMA3A.a 3708 to 4341 1 to 633   AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 633/633
(100 %)
3 diff
(99.6 %id)
BE905111 epithelioid carcinoma, Pancreas SEMA3A.a 3795 to 4588 1 to 799   tiling clone,   799/822
(97 %)
37 diff
(95.5 %id)
G36591   SEMA3A.a 3889 to 4208 321 to 2     Submitted on the opposite strand 320/321
(99 %)
0 diff
(100 %id)
N51438 multiple sclerosis lesions SEMA3A.a 3889 to 4208 321 to 2       320/321
(99 %)
0 diff
(100 %id)
BF697390 brain, primitive neuroectoderm SEMA3A.a 3954 to 4295 261 to 615       503/956
(52 %)
65 diff
(93.3 %id)
AA450244   SEMA3A.a 4725 to 4921 214 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (15/15 A in genome downstream of last aligned base) 197/197
(100 %)
0 diff
(100 %id)
DB316077 brain SEMA3A.a 5360 to 5889 530 to 1   tiling clone,   530/530
(100 %)
0 diff
(100 %id)
DC370482   SEMA3A.b 1 to 553 1 to 553 exact tiling clone,   553/553
(100 %)
0 diff
(100 %id)
BF742853 breast SEMA3A.c 1 to 351 351 to 1 exact tiling clone, Submitted on the opposite strand 355/355
(100 %)
2 diff
(99.5 %id)
AI671991 pooled germ cell tumors SEMA3A.d 1 to 327 328 to 2 exact tiling clone,   327/328
(99 %)
0 diff
(100 %id)
BE552070 pooled germ cell tumors SEMA3A.d 1 to 323 325 to 2 R45P E46* tiling clone,   324/325
(99 %)
0 diff
(100 %id)
AU252701 neuroblastoma SEMA3A.e-u 1 to 667 28 to 689 S33E N34Q M35H L36V A38G ... tiling clone, to resequence,   662/700
(94 %)
20 diff
(97.2 %id)
DA464716   SEMA3A.e-u 240 to 711 2 to 473 exact tiling clone, capped   472/472
(100 %)
1 diff
(99.8 %id)
BG251582 adenocarcinoma, cell line, Liver SEMA3A.e-u 261 to 625 1 to 365 exact AAA   365/365
(100 %)
1 diff
(99.8 %id)
AA136485 lung, lung carcinoma SEMA3A.e-u 334 to 774 1 to 443   tiling clone,   443/445
(99 %)
3 diff
(99.4 %id)
AA418054.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus SEMA3A.e-u 520 to 1012 15 to 507     also hits gene DICER1 493/507
(97 %)
6 diff
(98.9 %id)
AA417995.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus SEMA3A.e-u 741 to 1205 465 to 1   tiling clone, also hits gene DICER1 465/465
(100 %)
1 diff
(99.8 %id)
BQ007348 placenta SEMA3A.e-u 822 to 1205 401 to 18   AAA   384/384
(100 %)
0 diff
(100 %id)
CN285562 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells SEMA3A.e-u 834 to 1359 1 to 527       527/527
(100 %)
3 diff
(99.5 %id)
AA476744.
matches multiple genes
  SEMA3A.e-u 906 to 1205 316 to 17   AAA also hits gene MUT 300/300
(100 %)
1 diff
(99.7 %id)
BF215018 bone marrow, from acute myelogenous leukemia SEMA3A.e-u 1009 to 1725 1 to 713       713/859
(83 %)
34 diff
(96.1 %id)
H19164 brain SEMA3A.e-u 1045 to 1461 1 to 418       418/418
(100 %)
6 diff
(98.6 %id)
T78662 whole brain SEMA3A.e-u 1073 to 1456 1 to 387       387/455
(85 %)
10 diff
(97.9 %id)
CN294063 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 SEMA3A.e-u 1076 to 1701 1 to 627   tiling clone,   627/627
(100 %)
5 diff
(99.3 %id)
CD358009 Pooled-Skin SEMA3A.e-u 1358 to 2097 1 to 750       750/752
(99 %)
16 diff
(97.9 %id)
BF852425 lung_normal SEMA3A.e-u 1388 to 1713 16 to 340       325/340
(95 %)
6 diff
(98.3 %id)
TI_149309084   SEMA3A.e-u 1388 to 2178 866 to 82   tiling clone, AAA   785/957
(82 %)
13 diff
(98.7 %id)
BM090555 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) SEMA3A.e-u 1389 to 2010 1 to 617       617/617
(100 %)
5 diff
(99.2 %id)
BU687513 lung SEMA3A.e-u 1475 to 2178 717 to 14   AAA   704/704
(100 %)
0 diff
(100 %id)
CV574007 cornea, eye SEMA3A.e-u 1539 to 1691 1 to 153       153/153
(100 %)
1 diff
(99.4 %id)
CR748125   SEMA3A.e-u 1632 to 2178 561 to 15   AAA   547/547
(100 %)
0 diff
(100 %id)
AW079904 pooled SEMA3A.e-u 1697 to 2174 478 to 1       478/478
(100 %)
1 diff
(99.8 %id)
H18498 brain SEMA3A.e-u 1724 to 2173 463 to 1       463/468
(98 %)
19 diff
(96.0 %id)
TI_153991420   SEMA3A.e-u 1746 to 2185 527 to 88       440/527
(83 %)
7 diff
(98.7 %id)
AW207285   SEMA3A.e-u 1766 to 2185 430 to 11       420/430
(97 %)
7 diff
(98.4 %id)
R37566 whole brain SEMA3A.e-u 1840 to 2185 356 to 2       355/357
(99 %)
0 diff
(100 %id)
BM729169 eye, fetal eye SEMA3A.e-u 1867 to 2431 1 to 564   tiling clone, Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 564/564
(100 %)
1 diff
(99.9 %id)
AU252702 neuroblastoma SEMA3A.e-u 1921 to 2437 537 to 21   to resequence,   517/699
(73 %)
0 diff
(100 %id)
BF102683 adenocarcinoma, Prostate SEMA3A.e-u 2107 to 2747 1 to 627   tiling clone,   627/776
(80 %)
21 diff
(97.3 %id)
BM755117 stomach SEMA3A.e-u 2179 to 2296 1 to 119       119/123
(96 %)
3 diff
(97.6 %id)
BM682093 eye, fetal eye SEMA3A.e-u 2925 to 3593 688 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base) 670/670
(100 %)
3 diff
(99.6 %id)
AA284739 ovarian tumor, ovary SEMA3A.f-u 1 to 512 1 to 511 I70V tiling clone, to resequence,   511/511
(100 %)
5 diff
(99.1 %id)
BM090784 Fetal Pancreas (4 Pooled Donors, 18 - 20weeks, Stratagene #738023) SEMA3A.f-u 154 to 742 589 to 1   tiling clone,   589/589
(100 %)
4 diff
(99.4 %id)
AA416492   SEMA3A.f-u 219 to 516 1 to 296       296/298
(99 %)
8 diff
(97.4 %id)
AI240274 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus SEMA3A.f-u 354 to 743 390 to 1   tiling clone,   390/390
(100 %)
0 diff
(100 %id)
AA728816 alveolar rhabdomyosarcoma SEMA3A.f-u 1408 to 1632 252 to 28   tiling clone,   225/252
(89 %)
0 diff
(100 %id)
AA284740 ovarian tumor, ovary SEMA3A.f-u 1433 to 1796 369 to 6   tiling clone, to resequence,   364/369
(98 %)
0 diff
(100 %id)
BX391628 Neuroblastoma Cot 50-normalized SEMA3A.g-u 1 to 886 875 to 1 L2F F3I N4L S5K I6C ... tiling clone,   875/981
(89 %)
61 diff
(93.8 %id)
AL563419 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized SEMA3A.g-u 542 to 1342 795 to 1   tiling clone,   795/885
(89 %)
25 diff
(97.2 %id)
DA784955 brain SEMA3A.h 1 to 577 2 to 578   tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
DC349692 brain SEMA3A.h 338 to 754 1 to 417   tiling clone,   417/429
(97 %)
0 diff
(100 %id)
BM801410 duodenal adenocarcinoma, cell line, small intestine SEMA3A.h 687 to 1265 1 to 578   tiling clone,   578/1005
(57 %)
10 diff
(99.1 %id)
DA438301 tongue, tumor tissue SEMA3A.i 1 to 381 2 to 382   tiling clone, capped   381/381
(100 %)
0 diff
(100 %id)
AL529332 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized SEMA3A.i 235 to 760 1 to 438 exact     438/438
(100 %)
0 diff
(100 %id)
BF542156 hypernephroma, Kidney SEMA3A.j 1 to 459 1 to 458 F22L V23S tiling clone,   673/844
(79 %)
27 diff
(96.9 %id)
DA712345   SEMA3A.k 1 to 499 2 to 501 exact tiling clone, capped   500/500
(100 %)
2 diff
(99.6 %id)
CN293633 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 Gene SEMA3A, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
BF699509 brain, primitive neuroectoderm Gene SEMA3A, variant not shown         Suspected internal deletion, this clone was ignored    
DA779991 brain Gene SEMA3A, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f-u, .g-u, .h, .i, .j, .k Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI