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Gene SCNN1DTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
115 supporting clones for gene SCNN1D back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA222897 brain .a 1 to 533 2 to 534   tiling clone, capped   533/533
(100 %)
0 diff
(100 %id)
DA087110 cerebellum .a 9 to 516 2 to 509   capped   508/508
(100 %)
2 diff
(99.7 %id)
CN315410 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 25 to 522 1 to 498       498/498
(100 %)
2 diff
(99.6 %id)
BM921220 pooled brain, lung, testis .a 45 to 931 17 to 905       889/1062
(83 %)
19 diff
(98.3 %id)
DA119624 cerebellum .a 73 to 399 2 to 328   capped   327/327
(100 %)
0 diff
(100 %id)
BX456815 thymus .a 499 to 1423 1 to 912   tiling clone,   912/974
(93 %)
21 diff
(97.9 %id)
BX424308 thymus .a 1236 to 1681 4 to 449   tiling clone,   446/449
(99 %)
6 diff
(98.7 %id)
AK131558 testis .a 1292 to 4662 1 to 3370 R194N P195T P197H P198H S199Q ... tiling clone, available from FLJ,   3370/3370
(100 %)
6 diff
(99.9 %id)
DB064413 testis .a 1293 to 1848 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DQ898176 lung .a 2139 to 4253 1 to 2115   tiling clone,   2115/2115
(100 %)
4 diff
(99.9 %id)
BQ711522 Spleen .a 2332 to 3154 1 to 826       826/953
(86 %)
9 diff
(99.1 %id)
BM544646 brain, hippocampus .a 2388 to 3400 20 to 1053   tiling clone,   1006/1069
(94 %)
35 diff
(96.8 %id)
BF942864 nervous_normal .a 2455 to 2777 91 to 417       327/417
(78 %)
7 diff
(98.4 %id)
CD616054   .a 2468 to 3006 552 to 14       539/552
(97 %)
0 diff
(100 %id)
CD616055   .a 2468 to 3006 1 to 539       539/553
(97 %)
3 diff
(99.5 %id)
BM920480 pooled lung and spleen .a 2710 to 3708 1 to 1003       1003/1085
(92 %)
19 diff
(98.3 %id)
T19320   .a 2721 to 3118 1 to 400       400/400
(100 %)
7 diff
(98.3 %id)
BM559455 brain, medulla .a 2790 to 3625 21 to 857       837/1075
(77 %)
18 diff
(98.4 %id)
DB487563 hypothalamus .a 2847 to 3287 1 to 442       442/444
(99 %)
18 diff
(96.0 %id)
DB490573 hypothalamus .a 2847 to 3080 1 to 236       236/236
(100 %)
4 diff
(98.4 %id)
BF348008 anaplastic oligodendroglioma with 1p/19qloss, brain .a 3041 to 3828 1 to 795       795/844
(94 %)
32 diff
(96.3 %id)
DA560890 heart .a 3047 to 3619 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
BM353290 Pancreas, Purified pancreatic islet .a 3119 to 3692 1 to 574       574/574
(100 %)
0 diff
(100 %id)
CK825149 Pancreas, Purified pancreatic islet .a 3133 to 3567 1 to 435     Submitted on the opposite strand 435/435
(100 %)
0 diff
(100 %id)
CA777026 Pancreas, Purified pancreatic islet .a 3158 to 3537 1 to 380   fully sequenced,   380/380
(100 %)
1 diff
(99.8 %id)
DA390466 thalamus .a 3171 to 3742 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
BM314926 Pancreas, Purified pancreatic islet .a 3369 to 4026 658 to 1       658/658
(100 %)
1 diff
(99.9 %id)
AI377290 pooled .a 3407 to 4007 596 to 1       596/601
(99 %)
17 diff
(97.2 %id)
CK825150 Pancreas, Purified pancreatic islet .a 3470 to 3985 516 to 1     Submitted on the opposite strand 516/516
(100 %)
0 diff
(100 %id)
CA776745 Pancreas, Purified pancreatic islet .a 3495 to 3985 491 to 1   fully sequenced,   491/491
(100 %)
0 diff
(100 %id)
BM715513 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3504 to 4014 7 to 517       511/517
(98 %)
6 diff
(98.9 %id)
BI820185 pooled brain, lung, testis .a 3522 to 4017 1 to 496       496/496
(100 %)
2 diff
(99.6 %id)
TI_57199597   .a 3522 to 4025 72 to 575       504/906
(55 %)
9 diff
(99.1 %id)
AW295004   .a 3711 to 4024 314 to 1       314/324
(96 %)
0 diff
(100 %id)
AW002349 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 3742 to 3987 245 to 1       245/346
(70 %)
6 diff
(98.3 %id)
BX113012   .a 3750 to 4233 56 to 540       485/540
(89 %)
3 diff
(99.5 %id)
AA770404   .a 3762 to 3987 225 to 1       225/225
(100 %)
1 diff
(99.6 %id)
BF991464 placenta_normal .b 1 to 182 1 to 182   tiling clone,   182/182
(100 %)
0 diff
(100 %id)
BF991466 placenta_normal .b 1 to 182 1 to 182       182/182
(100 %)
0 diff
(100 %id)
AK093239 testis .b 18 to 2696 1 to 2679 H346Y F499L G628S G672R tiling clone, available from FLJ,   2679/2679
(100 %)
6 diff
(99.8 %id)
AX748006   .b 18 to 2696 1 to 2679 H346Y F499L G628S G672R     2679/2679
(100 %)
6 diff
(99.8 %id)
NM_001130413.1   .b 18 to 2706 1 to 2689 exact RefSeq,   2689/2693
(99 %)
5 diff
(99.9 %id)
DB027910 testis .b 19 to 608 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
TI_149315228   .b 1925 to 2696 843 to 80   AAA   764/974
(78 %)
24 diff
(97.6 %id)
TI_154130252   .b 1929 to 2696 854 to 92   AAA   763/947
(80 %)
11 diff
(98.9 %id)
TI_154114372   .b 1941 to 2696 846 to 102   AAA   745/902
(82 %)
32 diff
(96.5 %id)
CA945131 Human Lung Epithelial cells, lung .b 1999 to 2696 712 to 19   AAA   694/694
(100 %)
4 diff
(99.5 %id)
AI199647 anaplastic oligodendroglioma, brain .b 2047 to 2494 1 to 448     Submitted on the opposite strand 448/451
(99 %)
5 diff
(98.9 %id)
AI361695 B-cell, chronic lymphotic leukemia .b 2047 to 2498 1 to 452   tiling clone, Submitted on the opposite strand 452/452
(100 %)
0 diff
(100 %id)
AW293275   .b 2048 to 2607 1 to 560     Submitted on the opposite strand 560/560
(100 %)
2 diff
(99.7 %id)
BF941784 fibrotheoma, ovary .b 2051 to 2279 1 to 229     Submitted on the opposite strand 229/229
(100 %)
3 diff
(98.7 %id)
BM969394 lung, Primary Lung Epithelial Cells .b 2055 to 2696 659 to 19   AAA   641/641
(100 %)
2 diff
(99.7 %id)
CA419118 Chondrosarcoma Grade II, Left Pelvis .b 2055 to 2696 659 to 19   AAA   641/641
(100 %)
1 diff
(99.9 %id)
AI361696 B-cell, chronic lymphotic leukemia .b 2077 to 2400 1 to 324     Submitted on the opposite strand 324/324
(100 %)
2 diff
(99.4 %id)
BU078901 Pancreas, Purified pancreatic islet .b 2085 to 2676 1 to 592     Submitted on the opposite strand 592/592
(100 %)
0 diff
(100 %id)
EC493590 Prostate .b 2105 to 2201 1 to 95       95/95
(100 %)
2 diff
(97.9 %id)
BU729671.
matches multiple genes
eye, optic nerve .b 2105 to 2696 610 to 19   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base), also hits gene ZBTB7A 592/599
(98 %)
0 diff
(100 %id)
BM702010.
matches multiple genes
eye, optic nerve .b 2107 to 2694 1 to 589     also hits gene ZBTB7A 589/589
(100 %)
1 diff
(99.9 %id)
DB336753 testis .b 2149 to 2696 549 to 1       549/549
(100 %)
3 diff
(99.5 %id)
AI184542   .b 2237 to 2697 463 to 3       461/463
(99 %)
0 diff
(100 %id)
DB560944 hypothalamus .b 2251 to 2696 1 to 450     Submitted on the opposite strand 450/450
(100 %)
29 diff
(93.6 %id)
AI223399   .b 2284 to 2697 417 to 4   tiling clone,   414/417
(99 %)
0 diff
(100 %id)
DB556947 hypothalamus .b 2303 to 2696 1 to 403     Submitted on the opposite strand 403/403
(100 %)
35 diff
(91.4 %id)
AA617657 lung, lung tumor .b 2359 to 2701 350 to 10   tiling clone,   341/350
(97 %)
0 diff
(100 %id)
AA622685 lung, lung tumor .b 2528 to 2701 183 to 10       174/183
(95 %)
0 diff
(100 %id)
BC071784 Kidney .c 1 to 2663 1 to 1269   tiling clone, available from MGC, AAA Suspected internal deletion 1148/1269
(90 %)
10 diff
(99.3 %id)
BG432168 Kidney .c 1 to 1632 1 to 724   available from MGC, Suspected internal deletion 720/819
(87 %)
49 diff
(94.1 %id)
TI_43964119   .c 164 to 881 66 to 783       718/784
(91 %)
14 diff
(98.3 %id)
BI520370 brain, medulla .c 165 to 881 1 to 717   available from MGC,   717/718
(99 %)
7 diff
(99.1 %id)
BC036752 Brain, adult medulla .c 166 to 2012 1 to 1847   tiling clone, available from MGC,   1847/1847
(100 %)
3 diff
(99.9 %id)
NM_002978.2   .c 166 to 2668 1 to 2503 exact RefSeq,   2503/2503
(100 %)
0 diff
(100 %id)
DA107553 cerebellum .d 1 to 506 2 to 506   tiling clone, capped   505/505
(100 %)
14 diff
(97.3 %id)
AK127357 hippocampus .d 286 to 3760 1 to 3475 exact tiling clone, available from FLJ,   3475/3475
(100 %)
2 diff
(100.0 %id)
DA338203 hippocampus .d 287 to 869 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
BC125074 PCR rescued clones .d 1313 to 3390 1 to 2078 exact tiling clone,   2078/2079
(99 %)
1 diff
(100.0 %id)
DQ898175 lung .d 1338 to 3346 1 to 2009 V260A     2009/2009
(100 %)
2 diff
(100.0 %id)
EU489064 nasal epithelium .d 1430 to 3346 1 to 1917 exact     1917/1917
(100 %)
0 diff
(100 %id)
U38254   .d 1430 to 3346 1 to 1917 C532Y     1917/1917
(100 %)
2 diff
(99.9 %id)
DB309980 hippocampus .d 3229 to 3760 532 to 1       532/532
(100 %)
0 diff
(100 %id)
BM547056 brain, hippocampus .e 1 to 808 21 to 844   tiling clone, available from MGC,   824/1157
(71 %)
24 diff
(98.0 %id)
BC040882 Brain, hippocampus .e 18 to 2268 18 to 2268 exact tiling clone, available from MGC,   2251/2251
(100 %)
0 diff
(100 %id)
AK315288 testis .f 1 to 2110 2 to 2112 exact tiling clone,   2112/2112
(100 %)
1 diff
(100.0 %id)
DB034254 testis .f 1 to 578 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DB036055 testis .f 1 to 552 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
BG766742 melanotic melanoma, high MDR (cell line), skin .f 743 to 1482 1 to 738       738/968
(76 %)
12 diff
(98.8 %id)
BG767282 melanotic melanoma, high MDR (cell line), skin .f 743 to 1424 1 to 682       682/682
(100 %)
2 diff
(99.8 %id)
BF742140 breast .f 1003 to 1464 464 to 2     Submitted on the opposite strand 463/468
(98 %)
6 diff
(98.8 %id)
DR002253 fetal brain .g 1 to 541 8 to 553   tiling clone,   546/556
(98 %)
18 diff
(96.8 %id)
CX871722 embryonic stem .g 68 to 787 1 to 720       720/720
(100 %)
0 diff
(100 %id)
BC125075 PCR rescued clones .g 179 to 2358 1 to 2180 exact tiling clone,   2180/2180
(100 %)
0 diff
(100 %id)
DB133909 thymus .h 1 to 546 2 to 547   tiling clone, capped   546/546
(100 %)
1 diff
(99.9 %id)
DR000568 fetal brain .h 404 to 1035 1 to 632   tiling clone,   632/632
(100 %)
5 diff
(99.3 %id)
BI918995 brain .h 916 to 1710 1 to 810   tiling clone,   810/858
(94 %)
58 diff
(93.3 %id)
TI_57240793   .h 916 to 1710 1 to 810       810/858
(94 %)
58 diff
(93.3 %id)
AA917500 pooled .i 1 to 117 196 to 1       196/196
(100 %)
23 diff
(88.3 %id)
AI675767 pooled .i 26 to 314 289 to 1   tiling clone,   289/309
(93 %)
0 diff
(100 %id)
TI_149278876   .i 153 to 986 909 to 83   tiling clone, AAA   827/834
(99 %)
22 diff
(97.4 %id)
TI_159723594   .i 174 to 986 868 to 61   tiling clone, AAA   808/1011
(79 %)
8 diff
(99.3 %id)
AI932372 pooled .j 1 to 533 532 to 1 Q15H H16T L17S L18Y H19T ... tiling clone,   532/532
(100 %)
1 diff
(99.9 %id)
DA305120 hippocampus .k 1 to 564 2 to 565 Q24R tiling clone, capped   564/564
(100 %)
1 diff
(99.9 %id)
DA301759 hippocampus .l 1 to 573 2 to 574   tiling clone, capped   573/573
(100 %)
0 diff
(100 %id)
T19411   .l 9 to 236 1 to 228       228/228
(100 %)
1 diff
(99.6 %id)
DN997124 breast cancer, Mammary gland (cancer tissue) .l 47 to 599 1 to 553       553/553
(100 %)
6 diff
(99.0 %id)
DB037306 testis .l 197 to 776 2 to 581 exact tiling clone, capped   580/580
(100 %)
0 diff
(100 %id)
BM546117 ovary (pool of 3) .m-u 1 to 1003 20 to 1050 exact tiling clone,   1031/1143
(90 %)
49 diff
(95.8 %id)
DR002550 fetal brain .n 1 to 590 1 to 593 P49H H50R R66P H68P H69P ... tiling clone,   593/593
(100 %)
8 diff
(98.7 %id)
DA191649 amygdala .o 1 to 543 2 to 544 exact tiling clone, capped   543/543
(100 %)
0 diff
(100 %id)
DQ898177 lung Gene SCNN1D, variant not shown         Suspected internal deletion, this clone was ignored    
AK093372 testis Gene SCNN1D, variant not shown       available from FLJ, This clone was ignored    
AX748083   Gene SCNN1D, variant not shown         This clone was ignored    
AI341092 pooled germ cell tumors Gene SCNN1D, variant not shown       AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS, this clone was ignored    
DB298377 cerebellum Gene SCNN1D, variant not shown         This clone was ignored    
DA092273 cerebellum Gene SCNN1D, variant not shown       capped This clone was ignored    
DA449229 tongue, tumor tissue Gene SCNN1D, variant not shown       capped This clone was ignored    
AA041391 heart Gene SCNN1D, variant not shown         This clone was ignored    
AA041446 heart Gene SCNN1D, variant not shown         This clone was ignored    
AI066502 pooled germ cell tumors Gene SCNN1D, variant not shown       AAA This clone was ignored    
AI969066 pooled germ cell tumors Gene SCNN1D, variant not shown       AAA This clone was ignored    
DB033462 testis Gene SCNN1D, variant not shown       capped This clone was ignored    
DB337236 testis Gene SCNN1D, variant not shown         This clone was ignored    
DB219622 trachea Gene SCNN1D, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n, .o Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI