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Gene SCN8ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
55 supporting clones for gene SCN8A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AB027567   .a 1 to 7006 1 to 7007 exact tiling clone,   7007/7008
(99 %)
5 diff
(100.0 %id)
NM_014191.2   .a 1 to 7205 1 to 7205 exact RefSeq, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 7205/7205
(100 %)
0 diff
(100 %id)
AF225988   .a 179 to 7205 1 to 7026 L5V L257M M274H N276E L277P ... tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 7026/7026
(100 %)
18 diff
(99.8 %id)
BG761119 melanotic melanoma, high MDR (cell line), skin .a 554 to 1460 1 to 899       899/902
(99 %)
35 diff
(96.2 %id)
BF737106 bladder_tumor .a 3388 to 3896 1 to 514       514/514
(100 %)
30 diff
(94.2 %id)
Z50169   .a 3523 to 3769 1 to 246       246/246
(100 %)
5 diff
(98.0 %id)
BQ337986 nervous_normal .a 4141 to 4498 379 to 21       359/380
(94 %)
2 diff
(99.5 %id)
AJ310898   .a 4213 to 4399 1 to 187       187/187
(100 %)
0 diff
(100 %id)
BQ338035 nervous_normal .a 4492 to 4912 1 to 421       421/421
(100 %)
17 diff
(96.0 %id)
DA197394 brain .a 4738 to 5303 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA196088 amygdala .a 5060 to 5619 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA109963 cerebellum .a 5417 to 5960 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
BE818174 breast_normal .a 6000 to 6255 14 to 269       256/273
(93 %)
2 diff
(99.3 %id)
DA189824 amygdala .a 6031 to 6508 2 to 479   capped   478/479
(99 %)
2 diff
(99.6 %id)
AA057327 eye, retina .a 6058 to 6495 461 to 25   AAA   437/584
(74 %)
2 diff
(99.7 %id)
BF947129 nervous_normal .a 6071 to 6630 9 to 567       559/567
(98 %)
6 diff
(99.0 %id)
BF947128 nervous_normal .a 6085 to 6638 7 to 560       554/560
(98 %)
6 diff
(99.0 %id)
AA047806.
matches multiple genes
eye, retina .a 6096 to 6495 402 to 1     also hits gene PLEKHG5andTNFRSF25 402/402
(100 %)
7 diff
(98.3 %id)
BM929799 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 6104 to 6282 1 to 179   fully sequenced,   179/179
(100 %)
0 diff
(100 %id)
W96187 eye, retina .a 6114 to 6495 384 to 1       384/384
(100 %)
5 diff
(98.7 %id)
DA805553 brain .a 6145 to 6699 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
BQ339219 nervous_normal .a 6179 to 6750 591 to 21       571/591
(96 %)
0 diff
(100 %id)
BF947123 nervous_normal .a 6180 to 6750 596 to 28       569/596
(95 %)
0 diff
(100 %id)
BF947125 nervous_normal .a 6203 to 6691 484 to 1       484/484
(100 %)
17 diff
(96.5 %id)
BF947121 nervous_normal .a 6217 to 6740 547 to 23       525/547
(95 %)
0 diff
(100 %id)
BF947127 nervous_normal .a 6240 to 6740 533 to 35       499/533
(93 %)
0 diff
(100 %id)
BF947124 nervous_normal .a 6248 to 6617 370 to 6       365/370
(98 %)
0 diff
(100 %id)
BM684843 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 6252 to 6508 275 to 18   fully sequenced, AAA   258/258
(100 %)
2 diff
(99.3 %id)
BF947120 nervous_normal .a 6263 to 6616 358 to 11       348/358
(97 %)
0 diff
(100 %id)
BQ339222 nervous_normal .a 6272 to 6742 488 to 20       469/488
(96 %)
0 diff
(100 %id)
DB172054 kidney, tumor tissue .a 6378 to 6950 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA484483 brain .a 6440 to 6970 2 to 534   capped   533/533
(100 %)
4 diff
(99.3 %id)
AI348374 carcinoid, lung .a 6468 to 6940 1 to 473     Submitted on the opposite strand 473/473
(100 %)
0 diff
(100 %id)
DA797686 brain .a 6475 to 7043 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
CB529722 Aveolar Macrophage, lung .a 6575 to 7205 649 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 631/631
(100 %)
0 diff
(100 %id)
BX279946 carcinoid, lung .a 6632 to 7031 403 to 5     Submitted on the opposite strand 399/403
(99 %)
0 diff
(100 %id)
AY510083   .b 1 to 465 1 to 465   tiling clone,   465/465
(100 %)
0 diff
(100 %id)
NM_001177984.1   .b 409 to 7366 1 to 6958 exact RefSeq, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 6958/6958
(100 %)
0 diff
(100 %id)
FJ611941   .b 463 to 6282 1 to 5820 F273I M1375V tiling clone,   5820/5820
(100 %)
6 diff
(99.9 %id)
AK309213 thalamus .c 1 to 3252 2 to 3253 E431Q tiling clone,   3253/3253
(100 %)
3 diff
(100.0 %id)
DA403563 thalamus .c 1 to 550 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
AY510076   .c 7 to 130 1 to 124       124/124
(100 %)
0 diff
(100 %id)
AY682081 dorsal root ganglia .c 578 to 2171 1 to 1594   tiling clone,   1594/1594
(100 %)
1 diff
(100.0 %id)
BP251485 hippocampus .c 725 to 1311 1 to 587       587/587
(100 %)
2 diff
(99.7 %id)
AY682083 dorsal root ganglia .d 1 to 1627 1 to 1627 T147I tiling clone,   1627/1627
(100 %)
3 diff
(99.9 %id)
AY682082 dorsal root ganglia .e 1 to 1627 1 to 1627 I84V tiling clone,   1627/1627
(100 %)
2 diff
(99.9 %id)
BX497885 Liver .f 1 to 506 1 to 507 A25S D26* tiling clone,   507/507
(100 %)
4 diff
(99.3 %id)
BP251074 hippocampus .g 1 to 577 1 to 577 exact tiling clone,   577/577
(100 %)
2 diff
(99.7 %id)
AI131238 heart .g 85 to 580 496 to 1   tiling clone,   496/496
(100 %)
1 diff
(99.8 %id)
AU252700 neuroblastoma .h-u 1 to 686 700 to 8 I2S L8X A12X tiling clone,   693/700
(99 %)
0 diff
(100 %id)
AJ276141   .i 1 to 423 1 to 423   tiling clone,   423/423
(100 %)
0 diff
(100 %id)
AJ276142   .i 1 to 423 1 to 423       423/423
(100 %)
0 diff
(100 %id)
AJ277395   .i 1 to 423 1 to 423       423/423
(100 %)
0 diff
(100 %id)
AJ310884   .i 1 to 423 1 to 423       423/423
(100 %)
0 diff
(100 %id)
AJ310885   .i 1 to 423 1 to 423       423/423
(100 %)
0 diff
(100 %id)
AW380463 head_neck .j 1 to 325 307 to 634 C16L E18R Y20I Q21P C22V ... tiling clone,   328/634
(51 %)
8 diff
(98.8 %id)
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI