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Gene SCN3ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
74 supporting clones for gene SCN3A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_006922.3   .a 1 to 9123 1 to 9123 exact RefSeq, AAA   9123/9123
(100 %)
0 diff
(100 %id)
AF225987   .a 22 to 9115 1 to 9094 I475V S495G S604G L1163F F1614S ... tiling clone, AAA   9094/9094
(100 %)
23 diff
(99.8 %id)
NM_001081676.1   .b 1 to 8976 1 to 8976 exact RefSeq, AAA   8976/8976
(100 %)
0 diff
(100 %id)
AK299757 brain .b 18 to 2026 1 to 2008   tiling clone,   2008/2349
(85 %)
11 diff
(99.6 %id)
AF225986   .b 22 to 8968 1 to 8947 I475V S495G L1114F F1565S C1692R ... tiling clone, AAA   8947/8947
(100 %)
21 diff
(99.8 %id)
AW889165 nervous_tumor .c 1 to 201 14 to 210   tiling clone,   197/227
(86 %)
6 diff
(97.4 %id)
DQ993536   .c 22 to 290 1 to 269   tiling clone,   269/269
(100 %)
0 diff
(100 %id)
NM_001081677.1   .c 49 to 9024 1 to 8976 exact RefSeq, AAA   8976/8976
(100 %)
0 diff
(100 %id)
DA796981 brain .c 67 to 595 2 to 530   capped   529/531
(99 %)
6 diff
(98.9 %id)
DR002216 fetal brain .c 143 to 751 16 to 625       610/625
(97 %)
6 diff
(99.1 %id)
AJ251507   .c 230 to 6828 1 to 6599 exact tiling clone,   6599/6599
(100 %)
2 diff
(100.0 %id)
BP348889 brain .c 262 to 844 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DQ993537   .c 291 to 490 1 to 200       200/200
(100 %)
0 diff
(100 %id)
AJ276139 brain .c 999 to 1363 1 to 365       365/365
(100 %)
0 diff
(100 %id)
AJ276140 brain .c 999 to 1363 1 to 365       365/365
(100 %)
0 diff
(100 %id)
AJ277394   .c 999 to 1363 1 to 365       365/365
(100 %)
0 diff
(100 %id)
BQ374406 testis .c 1299 to 1823 536 to 4       533/540
(98 %)
6 diff
(98.9 %id)
BF364944 nervous_normal .c 1394 to 1748 367 to 7       363/375
(96 %)
17 diff
(95.5 %id)
CD623432   .c 2533 to 3225 19 to 713       695/716
(97 %)
7 diff
(99.1 %id)
CD623433   .c 3309 to 4052 773 to 28       746/807
(92 %)
12 diff
(98.6 %id)
BE173197 head_neck .c 3473 to 3628 1 to 156       156/156
(100 %)
1 diff
(99.4 %id)
BF347024 anaplastic oligodendroglioma with 1p/19qloss, brain .c 4205 to 4886 1 to 684       684/689
(99 %)
15 diff
(97.9 %id)
DA246574 brain .c 4654 to 5227 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA721847   .c 4728 to 5285 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
AB037777 brain .c 4837 to 9018 1 to 4183   tiling clone, available from KIAA,   4183/4183
(100 %)
1 diff
(100.0 %id)
AL706368 human skeletal muscle .c 5094 to 5695 1 to 602       602/602
(100 %)
5 diff
(99.2 %id)
DA328671 hippocampus .c 5232 to 5785 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
AF239921 Kidney .c 5398 to 5643 1 to 246       246/246
(100 %)
0 diff
(100 %id)
DB231033 trachea .c 5467 to 6025 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA406706 thalamus .c 5625 to 6189 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB138330 thymus .c 5648 to 6193 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
BP230230 brain .c 6230 to 6813 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
DA357166 subthalamic nucleus .c 6238 to 6796 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
H23297 whole brain .c 6418 to 6510 1 to 93       93/93
(100 %)
0 diff
(100 %id)
BE705824 head_neck .c 6507 to 6776 22 to 292       271/306
(88 %)
16 diff
(94.8 %id)
DA165403 amygdala .c 6515 to 7019 2 to 506   capped   505/505
(100 %)
0 diff
(100 %id)
BQ333689 marrow .c 6618 to 6766 1 to 150       150/166
(90 %)
13 diff
(92.2 %id)
BP230391 brain .c 6689 to 7270 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA172494 amygdala .c 6728 to 7296 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA302411 hippocampus .c 6766 to 7293 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
DB527078 testis .c 6927 to 7383 1 to 458     Submitted on the opposite strand 458/460
(99 %)
6 diff
(98.7 %id)
DA269971 caudate nucleus .c 7078 to 7643 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA251995 caudate nucleus .c 7249 to 7776 2 to 530   capped   529/529
(100 %)
5 diff
(99.1 %id)
BX281223 carcinoid, lung .c 7600 to 8114 1 to 515       515/515
(100 %)
0 diff
(100 %id)
AV702029 adrenal gland .c 7750 to 8378 1 to 630       630/637
(98 %)
3 diff
(99.6 %id)
BM728972 eye, fetal eye .c 7839 to 8436 1 to 598   fully sequenced,   598/598
(100 %)
1 diff
(99.9 %id)
BQ941318 sciatic nerve .c 7956 to 8816 10 to 870   tiling clone,   861/870
(98 %)
6 diff
(99.4 %id)
AW341282 carcinoid, lung .c 8098 to 8580 1 to 483     Submitted on the opposite strand 483/483
(100 %)
2 diff
(99.6 %id)
AI457246 carcinoid, lung .c 8099 to 8577 1 to 479     Submitted on the opposite strand 479/479
(100 %)
0 diff
(100 %id)
AW341281 carcinoid, lung .c 8099 to 8577 1 to 479     Submitted on the opposite strand 479/479
(100 %)
0 diff
(100 %id)
AW341288 carcinoid, lung .c 8099 to 8574 1 to 476     Submitted on the opposite strand 476/476
(100 %)
0 diff
(100 %id)
AW341327 carcinoid, lung .c 8099 to 8594 1 to 496     Submitted on the opposite strand 496/496
(100 %)
1 diff
(99.8 %id)
BF930594 nervous_tumor .c 8182 to 8464 286 to 3     Submitted on the opposite strand 284/308
(92 %)
0 diff
(100 %id)
BE327347 carcinoid, lung .c 8201 to 8546 1 to 346     Submitted on the opposite strand 346/346
(100 %)
0 diff
(100 %id)
N62237 multiple sclerosis lesions .c 8403 to 8679 1 to 279     Submitted on the opposite strand 279/279
(100 %)
3 diff
(99.0 %id)
BM681920 eye, fetal eye .c 8406 to 9024 637 to 19   tiling clone, fully sequenced, AAA   619/619
(100 %)
0 diff
(100 %id)
N62250 multiple sclerosis lesions .c 8410 to 8822 1 to 418     Submitted on the opposite strand 418/418
(100 %)
7 diff
(98.4 %id)
BF195245 carcinoid, lung .c 8559 to 9020 464 to 3       462/464
(99 %)
0 diff
(100 %id)
BE465393 carcinoid, lung .c 8582 to 9020 440 to 2       439/440
(99 %)
0 diff
(100 %id)
AA973965 carcinoid, lung .c 8620 to 9020 401 to 1       401/401
(100 %)
0 diff
(100 %id)
AF035686 cerebral cortex of brain .d 1 to 4149 5 to 4153 A175V Y318N M401T S606T V613E ... tiling clone,   4153/4153
(100 %)
12 diff
(99.8 %id)
AL079365 brain .e 1 to 515 1 to 514   tiling clone,   514/514
(100 %)
10 diff
(98.1 %id)
DA772987 brain .e 19 to 594 2 to 577   tiling clone, capped   576/576
(100 %)
2 diff
(99.7 %id)
BP349283 brain .e 176 to 757 1 to 582   tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
AF035685 cerebral cortex of brain .e 439 to 4731 1 to 4153 A175V Y318N M401T S606T V613E ...     4153/4153
(100 %)
12 diff
(99.8 %id)
DQ993538   .e 444 to 586 1 to 143       143/143
(100 %)
0 diff
(100 %id)
BF527027.
matches multiple genes
anaplastic oligodendroglioma with 1p/19qloss, brain, Brain, anaplastic oligodendroglioma with1p/19q loss .e 501 to 1234 1 to 732   tiling clone, available from MGC, also hits gene ZDHHC3 732/873
(83 %)
24 diff
(97.3 %id)
AK301853 testis .f 1 to 1908 1 to 1908 A161S tiling clone,   1908/1908
(100 %)
1 diff
(100.0 %id)
DC395656 testis .f 1 to 531 1 to 531       531/531
(100 %)
0 diff
(100 %id)
DB461655 testis .f 24 to 491 1 to 468       468/468
(100 %)
1 diff
(99.8 %id)
DB240915 trachea .g 1 to 574 17 to 591 L4X L5V V6G C7L L8S ... tiling clone, capped   575/575
(100 %)
1 diff
(99.9 %id)
CX165145 human embryonic stem cells differentiated toan early endodermal cell type .h 1 to 815 1 to 814 exact tiling clone,   814/814
(100 %)
1 diff
(99.9 %id)
DB128933 thymus .i 1 to 553 2 to 554 exact tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
DA217194 brain .j-u 1 to 545 2 to 546 exact tiling clone, capped   545/545
(100 %)
1 diff
(99.9 %id)
CV322959 kidney_tumor Gene SCN3A, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u, .k-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI