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Gene SCN11ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
16 supporting clones for gene SCN11A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF188679 dorsal root ganglia .a 1 to 6237 1 to 6237 exact tiling clone,   6237/6237
(100 %)
1 diff
(100.0 %id)
AJ417790   .a 31 to 5448 1 to 5418       5418/5419
(99 %)
5 diff
(100.0 %id)
DA845113 placenta .a 1883 to 2454 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
FN083632 breast carcinoma .a 3117 to 3205 1 to 89       89/89
(100 %)
2 diff
(97.8 %id)
AA913423 pooled .a 4092 to 4203 1 to 111     Submitted on the opposite strand 111/112
(99 %)
6 diff
(94.7 %id)
CD243400 testis .a 5644 to 6524 1 to 890   tiling clone,   890/903
(98 %)
35 diff
(96.2 %id)
AF109737 brain .b 1 to 6502 1 to 6501 S703N tiling clone, AAA   6501/6501
(100 %)
19 diff
(99.8 %id)
NM_014139.2   .b 1 to 6500 1 to 6500 exact RefSeq,   6500/6500
(100 %)
0 diff
(100 %id)
AF150882   .c 1 to 5729 1 to 5728 S703N tiling clone,   5728/5728
(100 %)
13 diff
(99.8 %id)
AA885211 pooled .c 4250 to 4684 1 to 435     Submitted on the opposite strand 435/435
(100 %)
2 diff
(99.6 %id)
AA913881 pooled .c 4250 to 4579 1 to 330     Submitted on the opposite strand 330/330
(100 %)
1 diff
(99.7 %id)
BF979493 testis .d 1 to 666 22 to 686   tiling clone,   665/900
(73 %)
24 diff
(97.4 %id)
BP397638 pancreatic islet .d 602 to 1103 502 to 1   tiling clone,   502/502
(100 %)
0 diff
(100 %id)
BF980111 testis .d 1214 to 1998 787 to 7   tiling clone,   779/892
(87 %)
17 diff
(98.1 %id)
AY686224   .e 1 to 460 1 to 460 I125T tiling clone,   460/460
(100 %)
2 diff
(99.6 %id)
BE550573 pooled germ cell tumors Gene SCN11A, variant not shown         Suspected internal deletion, suspected internal deletion, this clone was ignored    
AA446878   Gene SCN11A, variant not shown       fully sequenced, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS, this clone was ignored    
AA446997   Gene SCN11A, variant not shown       fully sequenced, Internal priming: the 3' end of the oligo dT primed clone lies in the CDS, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C