To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene SCML2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
108 supporting clones for gene SCML2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NR_033717.1   .a 1 to 3138 1 to 3138 exact RefSeq, tiling clone, AAA   3138/3138
(100 %)
0 diff
(100 %id)
BC051913 Uterus, leiomyosarcoma .a 59 to 3138 1 to 3080   available from MGC, AAA   3080/3080
(100 %)
0 diff
(100 %id)
AL833937 testis .a 1801 to 3134 86 to 1419   available from DKFZ, AAA   1334/1419
(94 %)
6 diff
(99.6 %id)
TI_44350837   .b 1 to 770 120 to 889       770/894
(86 %)
21 diff
(97.7 %id)
BI562446 testis .b 8 to 770 1 to 763   available from MGC,   763/768
(99 %)
20 diff
(97.4 %id)
BC040497 testis .b 12 to 4212 1 to 4200 G151E W209* tiling clone, available from MGC, AAA   4200/4200
(100 %)
7 diff
(99.9 %id)
NM_006089.2   .b 16 to 4212 1 to 4197 exact RefSeq, AAA   4197/4197
(100 %)
0 diff
(100 %id)
BP282732 bone marrow .b 43 to 624 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DB457369 testis .b 45 to 518 1 to 474       474/474
(100 %)
1 diff
(99.8 %id)
DA721868   .b 53 to 606 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA754825   .b 53 to 620 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB091899 testis .b 53 to 615 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB152712 thymus .b 53 to 631 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DB085594 testis .b 55 to 615 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA396692 thalamus .b 56 to 634 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA739550   .b 56 to 570 2 to 517   capped   516/522
(98 %)
2 diff
(99.7 %id)
DB288037 uterus .b 56 to 627 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA041802 bladder .b 57 to 640 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DB442134 testis .b 57 to 484 1 to 430       430/430
(100 %)
2 diff
(99.6 %id)
DB451358 testis .b 57 to 546 1 to 490       490/490
(100 %)
0 diff
(100 %id)
DB453103 testis .b 57 to 539 1 to 483       483/483
(100 %)
1 diff
(99.8 %id)
DB154840 thymus .b 57 to 638 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
BC064617 Testis, embryonal carcinoma .b 59 to 4212 1 to 4154 exact tiling clone, available from MGC, AAA   4154/4154
(100 %)
1 diff
(100.0 %id)
DB077916 testis .b 61 to 626 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA457759 tongue, tumor tissue .b 62 to 637 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA656133   .b 62 to 442 2 to 382   capped   381/381
(100 %)
0 diff
(100 %id)
DA862271 placenta .b 62 to 648 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DB061766 testis .b 62 to 638 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DB081014 testis .b 62 to 640 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DB097778 testis .b 62 to 627 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB095021 testis .b 63 to 649 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
BM475781 embryonal carcinoma, cell line, testis .b 64 to 866 31 to 848       818/1043
(78 %)
24 diff
(97.7 %id)
DR001934 fetal brain .b 67 to 839 1 to 773       773/773
(100 %)
8 diff
(99.0 %id)
CN295115 embryonic stem cells, DMSO-treated H9 cellline .b 69 to 653 6 to 590       585/590
(99 %)
6 diff
(99.0 %id)
CN295116 embryonic stem cells, DMSO-treated H9 cellline .b 71 to 819 1 to 749       749/749
(100 %)
5 diff
(99.4 %id)
AL554003 placenta, Placenta Cot 25-normalized .b 74 to 1063 1 to 976       976/988
(98 %)
17 diff
(98.3 %id)
BQ420311 embryonal carcinoma, cell line, testis .b 76 to 909 1 to 836       836/860
(97 %)
8 diff
(99.1 %id)
BU521097 leiomyosarcoma, uterus .b 76 to 938 1 to 866   available from MGC,   866/866
(100 %)
12 diff
(98.7 %id)
CR979026 T-Lymphocytes .b 80 to 856 1 to 779       779/784
(99 %)
2 diff
(99.8 %id)
AA227320 brain, neuroepithelial cells .b 81 to 446 1 to 365       365/365
(100 %)
6 diff
(98.4 %id)
CD657328 Embryonic Stem cells .b 81 to 872 12 to 800       789/805
(98 %)
14 diff
(98.3 %id)
Y18004   .b 82 to 4212 1 to 4130 exact     4130/4130
(100 %)
14 diff
(99.7 %id)
CN295117 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 84 to 836 1 to 753       753/753
(100 %)
0 diff
(100 %id)
AL705518 human skeletal muscle .b 208 to 585 1 to 378       378/378
(100 %)
0 diff
(100 %id)
BE938969 testis_normal .b 222 to 364 148 to 6       143/148
(96 %)
0 diff
(100 %id)
BE938986 testis_normal .b 222 to 364 148 to 6       143/148
(96 %)
0 diff
(100 %id)
DB081191 testis .b 379 to 956 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
AW367998 head_neck .b 572 to 1109 538 to 1       538/538
(100 %)
5 diff
(99.1 %id)
CX166913 human embryonic stem cells differentiated toan early endodermal cell type .b 630 to 1381 1 to 752       752/752
(100 %)
1 diff
(99.9 %id)
DB235998 trachea .b 762 to 1314 2 to 554   capped   553/553
(100 %)
6 diff
(99.0 %id)
BX510293 Liver .b 768 to 1308 1 to 541       541/541
(100 %)
0 diff
(100 %id)
BX328025 Placenta Cot 25-normalized .b 919 to 1747 11 to 841       831/903
(92 %)
26 diff
(97.2 %id)
DA732847   .b 950 to 1207 2 to 259   capped   258/258
(100 %)
0 diff
(100 %id)
BG390200 embryonal carcinoma, cell line, testis .b 1037 to 1854 1 to 827       825/1042
(79 %)
50 diff
(95.3 %id)
BG393891 embryonal carcinoma, cell line, testis .b 1711 to 2477 1 to 766       763/952
(80 %)
15 diff
(98.5 %id)
CN295119 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 1839 to 2601 1 to 764       764/764
(100 %)
7 diff
(99.1 %id)
BX391822 Placenta Cot 25-normalized .b 2690 to 3587 897 to 1       897/897
(100 %)
12 diff
(98.7 %id)
N99362 liver and spleen .b 2797 to 3245 1 to 451       451/465
(96 %)
4 diff
(99.2 %id)
BG614355 embryonal carcinoma, testis .b 2933 to 3750 1 to 823       823/823
(100 %)
28 diff
(96.6 %id)
BM990858 lung, Lung Focal Fibrosis .b 3042 to 3614 6 to 578     Submitted on the opposite strand 573/578
(99 %)
6 diff
(99.0 %id)
AL554002 placenta, Placenta Cot 25-normalized .b 3249 to 4185 936 to 1       936/1064
(87 %)
37 diff
(96.6 %id)
BE378760 endometrium, adenocarcinoma cell line, uterus .b 3482 to 3965 35 to 518       484/518
(93 %)
6 diff
(98.9 %id)
AA813365   .b 3716 to 4213 496 to 3       494/496
(99 %)
0 diff
(100 %id)
DB507033 testis .b 3735 to 4212 1 to 477     Submitted on the opposite strand 477/477
(100 %)
2 diff
(99.6 %id)
DB518571 testis .b 3741 to 4212 1 to 472     Submitted on the opposite strand 472/472
(100 %)
0 diff
(100 %id)
DB516834 testis .b 3744 to 4210 1 to 467     Submitted on the opposite strand 467/469
(99 %)
1 diff
(99.8 %id)
CA435532 lung, Metastatic Chondrosarcoma .b 3744 to 4219 487 to 12       476/487
(97 %)
0 diff
(100 %id)
DB522837 testis .b 3755 to 4210 1 to 456     Submitted on the opposite strand 456/458
(99 %)
1 diff
(99.8 %id)
AW023682 cochlea, ear .b 3795 to 4219 1 to 425       425/449
(94 %)
4 diff
(99.2 %id)
EC537420 Prostate .b 3838 to 3931 18 to 108       91/108
(84 %)
6 diff
(94.5 %id)
AA227119 brain, neuroepithelial cells .b 3884 to 4211 328 to 1       328/328
(100 %)
0 diff
(100 %id)
N71462 liver and spleen .b 3896 to 4212 313 to 1       313/317
(98 %)
7 diff
(97.8 %id)
BF908062 uterus_tumor .b 4021 to 4205 193 to 10     Submitted on the opposite strand 184/213
(86 %)
0 diff
(100 %id)
DB512730 testis .b 4029 to 4212 1 to 185     Submitted on the opposite strand 185/185
(100 %)
5 diff
(97.3 %id)
AK315116   .c 1 to 2071 2 to 2072 exact tiling clone,   2072/2072
(100 %)
1 diff
(100.0 %id)
AK022824   .c 1564 to 4008 1 to 2445   tiling clone, available from FLJ,   2445/2445
(100 %)
1 diff
(100.0 %id)
AU127487   .c 1565 to 2256 2 to 696   capped   695/695
(100 %)
12 diff
(98.3 %id)
AA223373 brain, neuroepithelial cells .c 1669 to 2124 1 to 457       457/457
(100 %)
2 diff
(99.6 %id)
BI767606 pooled lung and spleen .c 1855 to 2660 1 to 803       803/849
(94 %)
6 diff
(99.3 %id)
TI_57183835   .c 1855 to 2660 72 to 874       803/920
(87 %)
12 diff
(98.7 %id)
BP266641 thyroid .c 1867 to 2450 1 to 583       583/583
(100 %)
4 diff
(99.4 %id)
BP267141 thyroid .c 1867 to 2433 1 to 566       566/566
(100 %)
5 diff
(99.2 %id)
AU150056   .c 3518 to 4008 495 to 1       495/498
(99 %)
9 diff
(98.2 %id)
AA223301 brain, neuroepithelial cells .c 3736 to 4008 273 to 1       273/273
(100 %)
0 diff
(100 %id)
AK303064 testis .d 1 to 1956 1 to 1957 exact tiling clone,   1957/1957
(100 %)
2 diff
(99.9 %id)
DC404539 testis .d 1 to 584 1 to 585       585/585
(100 %)
1 diff
(99.9 %id)
AI879244 brain, frontal lobe .e 1 to 524 1 to 524   tiling clone,   524/524
(100 %)
0 diff
(100 %id)
AK299190   .e 384 to 1897 1 to 1514 exact tiling clone,   1514/1514
(100 %)
0 diff
(100 %id)
DA741856   .e 385 to 947 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
AK308140 brain .e 387 to 1692 1 to 1305 P4H Q5R T7L T8L L9*     1305/1305
(100 %)
3 diff
(99.8 %id)
DA797847 brain .e 388 to 952 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
BG531261 embryonal carcinoma, testis .e 1130 to 1856 1 to 731       731/746
(97 %)
27 diff
(96.4 %id)
AI879626 brain, frontal lobe .e 3246 to 3571 326 to 1   tiling clone,   326/326
(100 %)
0 diff
(100 %id)
DB453091 testis .f 1 to 495 1 to 495   tiling clone,   495/495
(100 %)
0 diff
(100 %id)
DB061247 testis .f 80 to 615 2 to 537 exact tiling clone, capped   536/536
(100 %)
1 diff
(99.9 %id)
DB087079 testis .g 1 to 583 2 to 584 V30X tiling clone, capped   583/583
(100 %)
0 diff
(100 %id)
DN913217   .h-u 1 to 693 702 to 13   tiling clone,   690/703
(98 %)
0 diff
(100 %id)
BG390802 embryonal carcinoma, cell line, testis .h-u 115 to 890 1 to 775   tiling clone,   775/1157
(66 %)
25 diff
(97.9 %id)
CN295118 embryonic stem cells, DMSO-treated H9 cellline .h-u 433 to 608 1 to 176       176/176
(100 %)
2 diff
(98.9 %id)
BX093433 liver and spleen .h-u 700 to 1456 1 to 757 exact tiling clone,   757/759
(99 %)
5 diff
(99.4 %id)
EH353501   .h-u 705 to 786 1 to 82   tiling clone,   82/82
(100 %)
0 diff
(100 %id)
EH309986   .h-u 714 to 786 1 to 72       72/72
(100 %)
1 diff
(98.7 %id)
H19270 brain .h-u 873 to 1044 1 to 172       172/177
(97 %)
1 diff
(99.5 %id)
R07934 liver and spleen .h-u 902 to 1283 1 to 388 F41X tiling clone,   388/388
(100 %)
13 diff
(96.7 %id)
BU561247 testis .i 1 to 703 1 to 711 exact tiling clone,   711/870
(81 %)
21 diff
(97.6 %id)
BU567664 testis .i 1 to 809 1 to 816 exact tiling clone,   816/816
(100 %)
26 diff
(96.9 %id)
BU570255 testis .i 1 to 350 1 to 351       351/765
(45 %)
4 diff
(99.5 %id)
BU854098 testis .i 1 to 593 1 to 604 exact     604/657
(91 %)
20 diff
(97.0 %id)
DA746046   .j 1 to 567 2 to 569 K40R tiling clone, capped   568/568
(100 %)
2 diff
(99.7 %id)
AL711779 human skeletal muscle .k-u 1 to 484 1 to 484 exact tiling clone,   484/484
(100 %)
0 diff
(100 %id)
AW847828 colon .l-u 1 to 349 351 to 1 exact tiling clone,   351/351
(100 %)
15 diff
(95.8 %id)
AA094852   Gene SCML2, variant not shown         This clone was ignored    
BJ989597 hepatoblastoma Gene SCML2, variant not shown         Suspected internal deletion, this clone was ignored    
BJ989598 hepatoblastoma Gene SCML2, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j, .k-u, .l-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI