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Gene SAMD4ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
289 supporting clones for gene SAMD4A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_44348929   .a 1 to 700 83 to 780   tiling clone,   698/862
(80 %)
8 diff
(99.1 %id)
DB080667 testis .a 71 to 610 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA484109 brain .a 86 to 411 204 to 530   capped   529/529
(100 %)
1 diff
(99.9 %id)
DA393986 thalamus .a 201 to 703 2 to 505   capped   504/572
(88 %)
2 diff
(99.7 %id)
CD109884 Human Placenta, placenta .a 221 to 703 27 to 510   available from MGC,   484/798
(60 %)
2 diff
(99.8 %id)
AK024652   .a 509 to 2846 1 to 2338   tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 2338/2338
(100 %)
2 diff
(100.0 %id)
NM_015589.4   .a 509 to 7040 1 to 6532   RefSeq,   6532/6532
(100 %)
6 diff
(100.0 %id)
DB036412 testis .a 902 to 1475 2 to 575   tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
BE933561 head_neck .a 1152 to 1743 7 to 597       591/597
(98 %)
7 diff
(98.9 %id)
AW405595 lymph .a 1172 to 1699 8 to 535       528/535
(98 %)
6 diff
(98.9 %id)
TI_154142863   .a 1172 to 1906 96 to 830       735/741
(99 %)
12 diff
(98.4 %id)
BQ440177 melanotic melanoma, skin .a 1229 to 1905 1 to 676       676/874
(77 %)
5 diff
(99.5 %id)
DB315080 brain .a 2314 to 2840 527 to 1       527/527
(100 %)
1 diff
(99.9 %id)
DB116526 thymus .b 1 to 546 2 to 548   tiling clone, capped   547/547
(100 %)
3 diff
(99.5 %id)
TI_43963268   .b 463 to 1249 27 to 818   tiling clone,   792/818
(96 %)
29 diff
(96.5 %id)
BI520099 brain, medulla .b 472 to 1202 1 to 735   tiling clone,   735/783
(93 %)
22 diff
(97.2 %id)
BI520872 brain, medulla .b 1570 to 2409 848 to 1   tiling clone,   848/848
(100 %)
24 diff
(97.2 %id)
TI_43963269   .b 1570 to 2409 848 to 1       848/848
(100 %)
24 diff
(97.2 %id)
BC121173 PCR rescued clones .c 1 to 1963 1 to 1963 exact tiling clone,   1963/1963
(100 %)
5 diff
(99.8 %id)
BC121174 PCR rescued clones .c 1 to 1963 1 to 1963 exact     1963/1963
(100 %)
5 diff
(99.8 %id)
EL734064 mixed .c 3 to 668 1 to 667   tiling clone,   667/667
(100 %)
2 diff
(99.8 %id)
NM_001161576.1   .c 5 to 6272 1 to 6268   RefSeq,   6268/6268
(100 %)
6 diff
(100.0 %id)
AW605649 denis_drash .c 280 to 627 349 to 1       349/349
(100 %)
5 diff
(98.6 %id)
AW939974 denis_drash .c 280 to 627 349 to 1     Submitted on the opposite strand 349/349
(100 %)
5 diff
(98.6 %id)
AA436092.
matches multiple genes
  .c 292 to 782 1 to 490     also hits gene DYNLL2 490/517
(94 %)
9 diff
(98.3 %id)
AB028976 brain .c 367 to 6262 1 to 5896   tiling clone, available from KIAA,   5896/5896
(100 %)
1 diff
(100.0 %id)
BP253274 Kidney .c 543 to 1124 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
BC021060 Skin, melanotic melanoma. .c 888 to 2078 1 to 1192   available from MGC, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 1192/1192
(100 %)
4 diff
(99.7 %id)
BE276010 melanotic melanoma, skin .c 890 to 1652 28 to 783   available from MGC,   756/880
(85 %)
22 diff
(97.5 %id)
BE276121 melanotic melanoma, skin .c 890 to 1570 32 to 713       682/716
(95 %)
13 diff
(98.2 %id)
BF526675 brain, glioblastoma with EGFR amplification .c 932 to 1714 1 to 778       778/951
(81 %)
13 diff
(98.7 %id)
CV024497 mixed .c 966 to 1612 1 to 647       647/650
(99 %)
1 diff
(99.9 %id)
DB283881 uterus .c 1205 to 1756 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
CA432560 cell lines, Chondrosarcoma .c 1347 to 2078 745 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 727/727
(100 %)
7 diff
(99.1 %id)
BX471435   .c 1422 to 1935 1 to 514       514/514
(100 %)
0 diff
(100 %id)
DR002281 fetal brain .c 1457 to 2058 1 to 602       602/602
(100 %)
1 diff
(99.9 %id)
BI830760 brain, medulla .c 1518 to 2066 1 to 548       548/1000
(54 %)
2 diff
(99.8 %id)
TI_57172799   .c 1518 to 2066 69 to 616       548/1068
(51 %)
7 diff
(99.4 %id)
AA992424   .c 1602 to 2073 473 to 3       471/473
(99 %)
7 diff
(98.6 %id)
AA812909   .c 1613 to 2078 472 to 7       466/472
(98 %)
0 diff
(100 %id)
DB523223 testis .c 1622 to 2078 1 to 458     Submitted on the opposite strand 458/458
(100 %)
1 diff
(99.8 %id)
AW044263 pooled .c 1628 to 2076 459 to 11       449/459
(97 %)
1 diff
(99.8 %id)
DB526953 testis .c 1630 to 2077 1 to 449     Submitted on the opposite strand 449/449
(100 %)
2 diff
(99.6 %id)
AI652124 pooled germ cell tumors .c 1638 to 2078 460 to 20   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 441/441
(100 %)
6 diff
(98.7 %id)
BM055205 Islets of Langerhans, Pancreas .c 1664 to 2078 1 to 415   fully sequenced,   415/415
(100 %)
3 diff
(99.3 %id)
AA758416   .c 1674 to 2076 405 to 3       403/409
(98 %)
0 diff
(100 %id)
AI373580 uterus .c 1678 to 2078 401 to 1       401/401
(100 %)
1 diff
(99.8 %id)
AI138405   .c 1679 to 2079 404 to 4       401/404
(99 %)
0 diff
(100 %id)
DA648257   .c 1711 to 2244 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
AI766813 2 pooled tumors (clear cell type), Kidney .c 1767 to 2040 274 to 1       274/274
(100 %)
1 diff
(99.7 %id)
AA622908 lung, lung tumor .c 1768 to 1917 150 to 1       150/150
(100 %)
0 diff
(100 %id)
AI654219 pooled germ cell tumors .c 1768 to 2078 340 to 30   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 311/311
(100 %)
14 diff
(95.5 %id)
BM841702 lymph node, stomach .c 1792 to 2078 1 to 288   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 288/288
(100 %)
18 diff
(93.8 %id)
BM054954 Islets of Langerhans, Pancreas .c 1809 to 1884 76 to 1   fully sequenced,   76/76
(100 %)
0 diff
(100 %id)
BF448090 Kidney .c 1886 to 2078 208 to 15   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 194/194
(100 %)
2 diff
(99.0 %id)
TI_154135498   .c 1957 to 2529 666 to 93   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 574/576
(99 %)
21 diff
(96.4 %id)
BM453059 leiomyosarcoma, uterus .c 2193 to 2902 1 to 712       712/1104
(64 %)
22 diff
(98.1 %id)
DA240890 brain .c 2237 to 2826 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
BU146156 dorsal root ganglia .c 2349 to 3267 1 to 924       924/930
(99 %)
36 diff
(96.2 %id)
BG012161 placenta_normal .c 2352 to 2669 1 to 318       318/318
(100 %)
4 diff
(98.8 %id)
BI010598 lung_normal .c 2352 to 2669 1 to 318       318/318
(100 %)
4 diff
(98.8 %id)
DB281513 uterus .c 2387 to 2914 2 to 529   capped   528/528
(100 %)
0 diff
(100 %id)
BU193631 leiomyosarcoma, uterus .c 2477 to 3335 1 to 875       875/918
(95 %)
19 diff
(98.0 %id)
DA234867 brain .c 2492 to 3081 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA493532 brain .c 2518 to 3098 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA102624 cerebellum .c 2577 to 3168 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
DA120738 cerebellum .c 2577 to 3130 2 to 555   capped   554/554
(100 %)
2 diff
(99.7 %id)
CN365339 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 2735 to 3337 1 to 604       604/604
(100 %)
1 diff
(99.9 %id)
BX502840 Liver .c 2743 to 3415 1 to 674       674/674
(100 %)
2 diff
(99.8 %id)
AA729779 pooled germ cell tumors .c 2839 to 3298 486 to 34       453/486
(93 %)
0 diff
(100 %id)
AW014076   .c 2878 to 3298 471 to 51   AAA   421/454
(92 %)
0 diff
(100 %id)
BI036104 nervous_tumor .c 2979 to 3254 276 to 1       276/276
(100 %)
0 diff
(100 %id)
DA413549 thalamus .c 3064 to 3618 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
CA407556 adipose .c 3293 to 3607 1 to 315       315/315
(100 %)
0 diff
(100 %id)
BY996102   .c 3355 to 3995 10 to 650       641/650
(98 %)
6 diff
(99.1 %id)
AL600189   .c 3508 to 4019 1 to 512       512/512
(100 %)
1 diff
(99.9 %id)
AA167157   .c 3558 to 3815 1 to 264       264/299
(88 %)
6 diff
(98.0 %id)
AK074716   .c 3598 to 6262 1 to 2666   tiling clone, available from FLJ,   2666/2666
(100 %)
5 diff
(99.9 %id)
DA728040   .c 3599 to 4418 2 to 821   capped   820/820
(100 %)
8 diff
(99.1 %id)
DA296875 hippocampus .c 3634 to 4209 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DB267438 uterus .c 3663 to 4252 2 to 592   capped   591/591
(100 %)
4 diff
(99.4 %id)
CN365337 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 3699 to 4299 7 to 607       601/607
(99 %)
0 diff
(100 %id)
BM834199 stomach .c 3718 to 4308 1 to 589       589/589
(100 %)
2 diff
(99.7 %id)
AI146610 senescent fibroblast .c 3723 to 3940 218 to 1       218/218
(100 %)
4 diff
(98.2 %id)
DA946001 Spleen .c 3775 to 4334 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
BM835216 stomach .c 3778 to 4354 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
BQ213310 melanotic melanoma, skin .c 3825 to 4725 1 to 909       909/909
(100 %)
16 diff
(98.3 %id)
DA160138 amygdala .c 3920 to 4486 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
BF735361 amnion_normal .c 3935 to 4272 9 to 352       344/352
(97 %)
6 diff
(98.3 %id)
DA274412 corpus callosum .c 3936 to 4505 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
AA331637 Embryo, 8 weeks .c 4000 to 4286 1 to 288       288/297
(96 %)
2 diff
(99.4 %id)
DB176023 kidney, tumor tissue .c 4013 to 4584 2 to 576   capped   575/575
(100 %)
5 diff
(99.2 %id)
AW955792   .c 4017 to 4719 1 to 701       701/702
(99 %)
13 diff
(98.2 %id)
DB269340 uterus .c 4025 to 4591 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BF734969 amnion_normal .c 4080 to 4453 379 to 6     Submitted on the opposite strand 374/379
(98 %)
0 diff
(100 %id)
CK002758 brain/CNS, Bulk tissue from Human Spinal cord .c 4134 to 4749 1 to 609       609/636
(95 %)
12 diff
(98.2 %id)
BM128739 Islets of Langerhans, Pancreas .c 4149 to 4701 1 to 553       553/553
(100 %)
0 diff
(100 %id)
W47273 senescent fibroblast .c 4217 to 4692 1 to 480       480/480
(100 %)
4 diff
(99.2 %id)
BE708151 head_neck .c 4281 to 4562 12 to 293       282/293
(96 %)
6 diff
(98.0 %id)
DB260728 uterus .c 4297 to 4855 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA668168 esophagus .c 4300 to 4866 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
DB177291 kidney, tumor tissue .c 4312 to 4860 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
AA167333   .c 4326 to 4875 539 to 1       539/557
(96 %)
16 diff
(97.2 %id)
AA442203   .c 4408 to 4857 1 to 448       448/451
(99 %)
3 diff
(99.4 %id)
CD518215 White Matter .c 4434 to 5232 1 to 808       808/900
(89 %)
12 diff
(98.7 %id)
AA235444 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 4498 to 4738 1 to 242       242/242
(100 %)
1 diff
(99.6 %id)
AA235435 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 4533 to 4854 1 to 322       322/322
(100 %)
0 diff
(100 %id)
DR761912 embryonic stem .c 4572 to 5261 11 to 700       690/700
(98 %)
6 diff
(99.2 %id)
AA411889   .c 4614 to 4915 1 to 302     Submitted on the opposite strand 302/302
(100 %)
0 diff
(100 %id)
DA132210 alzheimer cortex .c 4662 to 5208 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
CD671779 eye, Iris .c 4745 to 5377 1 to 634       634/634
(100 %)
2 diff
(99.7 %id)
N87757   .c 4752 to 4989 1 to 240       240/240
(100 %)
12 diff
(95.0 %id)
F12277 brain, total brain .c 4770 to 5100 1 to 331       331/331
(100 %)
1 diff
(99.7 %id)
R19472 whole brain .c 4771 to 5166 1 to 405       405/475
(85 %)
9 diff
(98.2 %id)
BG546896 lung .c 4794 to 5455 1 to 662       662/662
(100 %)
5 diff
(99.3 %id)
DA569450 whole embryo, mainly head .c 4806 to 5645 2 to 836   capped   835/835
(100 %)
8 diff
(99.1 %id)
R51233 whole brain .c 4810 to 5200 1 to 405       405/412
(98 %)
24 diff
(94.2 %id)
T64856 whole brain .c 4816 to 5283 1 to 484       484/489
(98 %)
16 diff
(96.8 %id)
CD252289 White Matter .c 4866 to 5562 12 to 714       703/950
(74 %)
6 diff
(99.4 %id)
DA584857 lung .c 4892 to 5409 2 to 519   capped   518/518
(100 %)
1 diff
(99.9 %id)
BF825672 head_normal .c 4951 to 5435 8 to 492       485/503
(96 %)
6 diff
(98.9 %id)
AI001162   .c 4985 to 5459 1 to 475     Submitted on the opposite strand 475/475
(100 %)
2 diff
(99.6 %id)
BC011489 Brain, glioblastoma with EGFR amplification .c 5040 to 6262 164 to 1381   available from MGC, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 1218/1381
(88 %)
6 diff
(99.6 %id)
BF344193 brain, glioblastoma with EGFR amplification .c 5040 to 5589 193 to 735   available from MGC,   543/735
(73 %)
6 diff
(99.2 %id)
BF977559 melanotic melanoma, high MDR, skin .c 5054 to 5682 1 to 630       630/784
(80 %)
15 diff
(98.1 %id)
N48632 multiple sclerosis lesions .c 5062 to 5304 1 to 246       246/248
(99 %)
10 diff
(96.0 %id)
BF825712 head_normal .c 5081 to 5252 16 to 188       173/188
(92 %)
6 diff
(96.9 %id)
BF825689 head_normal .c 5086 to 5584 1 to 497       497/497
(100 %)
11 diff
(97.8 %id)
CF455940 peripheral nervous system .c 5090 to 5838 29 to 768       740/769
(96 %)
11 diff
(98.6 %id)
CN365338 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 5117 to 5781 1 to 664       664/664
(100 %)
4 diff
(99.4 %id)
R21257 placenta .c 5124 to 5535 1 to 426       426/429
(99 %)
20 diff
(95.4 %id)
CD558234 White Matter .c 5124 to 5821 28 to 735       708/960
(73 %)
24 diff
(97.5 %id)
CB215472 normal endometrium, late proliferativephase, cycle day 13, uterus .c 5125 to 5776 1 to 651       651/651
(100 %)
1 diff
(99.9 %id)
H07978 whole brain .c 5189 to 5604 1 to 422     Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 422/427
(98 %)
9 diff
(97.9 %id)
CF456187 peripheral nervous system .c 5241 to 5966 29 to 750       722/873
(82 %)
6 diff
(99.4 %id)
DR422073 eye, Pterygium .c 5335 to 6075 1 to 740       740/740
(100 %)
6 diff
(99.2 %id)
Z19347 leg muscle, skeletal muscle .c 5356 to 5694 1 to 339       339/339
(100 %)
9 diff
(97.4 %id)
AW889289 nervous_tumor .c 5377 to 5688 318 to 7       312/318
(98 %)
0 diff
(100 %id)
BF344889 brain, glioblastoma with EGFR amplification .c 5410 to 6066 1 to 655       655/902
(72 %)
31 diff
(96.6 %id)
AV656024 corresponding non cancerous liver tissue .c 5411 to 5799 1 to 389     Submitted on the opposite strand 389/389
(100 %)
11 diff
(97.2 %id)
AA131514 uterus .c 5437 to 5794 358 to 1       358/364
(98 %)
0 diff
(100 %id)
AA516502 Prostate .c 5452 to 6007 30 to 578       549/578
(94 %)
6 diff
(99.0 %id)
CN365336 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 5487 to 6220 1 to 734       734/734
(100 %)
3 diff
(99.6 %id)
C17779 placenta .c 5503 to 6070 1 to 566       566/566
(100 %)
5 diff
(99.2 %id)
D54837   .c 5516 to 5735 1 to 219       219/225
(97 %)
4 diff
(98.3 %id)
D54844   .c 5516 to 5959 1 to 440       440/441
(99 %)
8 diff
(98.2 %id)
D59031   .c 5529 to 5853 1 to 324       324/326
(99 %)
7 diff
(97.9 %id)
CD370605 Alveolar Macrophage, lung .c 5533 to 6262 745 to 16   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 730/730
(100 %)
0 diff
(100 %id)
BU617242 Bone, Subchondral Bone .c 5572 to 6262 707 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 689/689
(100 %)
3 diff
(99.6 %id)
BG573447 placenta .c 5626 to 6256 1 to 640       640/765
(83 %)
43 diff
(94.4 %id)
H89008 cochlea, ear .c 5653 to 5929 1 to 281   fully sequenced,   281/281
(100 %)
4 diff
(98.6 %id)
AI080421 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5657 to 5794 137 to 1       137/137
(100 %)
1 diff
(99.3 %id)
BF105263 Kidney .c 5659 to 6223 1 to 573       573/598
(95 %)
33 diff
(94.5 %id)
BU634138 cell lines, Chondrosarcoma .c 5674 to 6262 607 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 589/589
(100 %)
0 diff
(100 %id)
AA443202 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5680 to 6045 1 to 366     Submitted on the opposite strand 366/366
(100 %)
0 diff
(100 %id)
CD671778 eye, Iris .c 5684 to 6263 595 to 16       580/595
(97 %)
0 diff
(100 %id)
D79687 aorta .c 5691 to 6150 1 to 459       459/460
(99 %)
5 diff
(99.0 %id)
D79932 aorta .c 5692 to 5955 1 to 263       263/263
(100 %)
3 diff
(98.9 %id)
BM128489 Islets of Langerhans, Pancreas .c 5755 to 6263 517 to 9       509/517
(98 %)
0 diff
(100 %id)
AI802898 pooled .c 5763 to 6262 511 to 12   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 500/500
(100 %)
1 diff
(99.8 %id)
AI141779 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5772 to 6263 497 to 6       492/497
(98 %)
0 diff
(100 %id)
N34394 multiple sclerosis lesions .c 5777 to 6262 489 to 1       489/490
(99 %)
3 diff
(99.4 %id)
AA847165 germinal center B cell .c 5800 to 6259 481 to 22   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 460/460
(100 %)
0 diff
(100 %id)
AI635176 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 5810 to 6263 478 to 25       454/479
(94 %)
0 diff
(100 %id)
AI190545   .c 5812 to 6263 459 to 8       452/459
(98 %)
0 diff
(100 %id)
AI435064 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5812 to 6263 458 to 7       452/458
(98 %)
0 diff
(100 %id)
AI168649 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5817 to 6262 446 to 1       446/447
(99 %)
0 diff
(100 %id)
AW080316 esophagus, squamous cell carcinoma .c 5817 to 6263 448 to 2       447/448
(99 %)
0 diff
(100 %id)
AA411888   .c 5820 to 6263 445 to 2     Submitted on the opposite strand 444/445
(99 %)
0 diff
(100 %id)
DB560482 hypothalamus .c 5828 to 6262 1 to 439     Submitted on the opposite strand 439/439
(100 %)
4 diff
(99.1 %id)
AA576322 breast, breast tumor .c 5829 to 6262 436 to 3       434/436
(99 %)
0 diff
(100 %id)
DB356091 whole embryo, mainly head .c 5837 to 6260 425 to 3       423/506
(83 %)
0 diff
(100 %id)
AI889254 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 5843 to 6262 420 to 1       420/420
(100 %)
0 diff
(100 %id)
AI299604 carcinoid, lung .c 5847 to 6261 415 to 1       415/415
(100 %)
0 diff
(100 %id)
TI_149308306   .c 5859 to 6262 505 to 102   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 404/968
(41 %)
1 diff
(99.9 %id)
BU687156 lung, Primary Lung Epithelial Cells .c 5859 to 6262 419 to 16   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 404/412
(98 %)
1 diff
(99.8 %id)
AW129053 brain, tumor, 5 pooled (see description) .c 5873 to 6266 400 to 7   tiling clone,   394/400
(98 %)
0 diff
(100 %id)
AA443240 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5878 to 6263 388 to 3     Submitted on the opposite strand 386/388
(99 %)
0 diff
(100 %id)
AA464602 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 5881 to 6259 379 to 1       379/379
(100 %)
0 diff
(100 %id)
R21258 placenta .c 5886 to 6259 382 to 1       382/447
(85 %)
26 diff
(94.2 %id)
AI567019 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 5887 to 6262 377 to 1       377/377
(100 %)
1 diff
(99.8 %id)
AA922240 pooled .c 5895 to 6263 370 to 3       368/370
(99 %)
0 diff
(100 %id)
H88789 cochlea, ear .c 5899 to 6235 343 to 1   fully sequenced,   343/343
(100 %)
7 diff
(98.0 %id)
R43813 whole brain .c 5910 to 6263 371 to 9       363/373
(97 %)
0 diff
(100 %id)
AA628837   .c 5911 to 6263 358 to 6       353/358
(98 %)
0 diff
(100 %id)
T72598 whole brain .c 5913 to 6218 313 to 3       311/361
(86 %)
0 diff
(100 %id)
AW954425   .c 5918 to 6251 334 to 1     Submitted on the opposite strand 334/472
(70 %)
0 diff
(100 %id)
AA377422 synovial membrane .c 5920 to 6252 333 to 1     Submitted on the opposite strand 333/333
(100 %)
0 diff
(100 %id)
F09903 brain, total brain .c 5929 to 6262 334 to 1       334/334
(100 %)
0 diff
(100 %id)
R51234 whole brain .c 5929 to 6263 345 to 9       337/345
(97 %)
0 diff
(100 %id)
AA904751 pooled .c 5936 to 6263 330 to 3       328/330
(99 %)
0 diff
(100 %id)
H07887 whole brain .c 5944 to 6262 349 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 331/331
(100 %)
15 diff
(95.5 %id)
F00422 leg muscle, skeletal muscle .c 5953 to 6235 283 to 1       283/283
(100 %)
0 diff
(100 %id)
AA532518 normal prostate, Prostate .c 5980 to 6257 283 to 6       278/283
(98 %)
0 diff
(100 %id)
AI073638 senescent fibroblast .c 5986 to 6263 283 to 6       278/283
(98 %)
0 diff
(100 %id)
AW194534 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .c 5988 to 6260 291 to 18       274/291
(94 %)
0 diff
(100 %id)
BX471444.
matches multiple genes
  .c 6025 to 6262 255 to 20   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base), also hits gene EPB41L2 236/236
(100 %)
2 diff
(99.2 %id)
N67378 cochlea, ear .c 6038 to 6266 233 to 4       230/233
(98 %)
0 diff
(100 %id)
AI090923 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 6126 to 6259 134 to 1       134/134
(100 %)
0 diff
(100 %id)
BI825501 brain, medulla .d 1 to 954 1 to 950   tiling clone,   950/951
(99 %)
24 diff
(97.5 %id)
TI_57170391   .d 1 to 954 64 to 1013       950/1014
(93 %)
29 diff
(97.2 %id)
NM_001161577.1   .d 1 to 5576 1 to 5576 exact RefSeq,   5576/5576
(100 %)
6 diff
(99.9 %id)
BX281572 brain, medulla .d 4 to 500 1 to 497       497/497
(100 %)
1 diff
(99.8 %id)
BG724184 testis .d 41 to 773 1 to 735   available from MGC,   735/736
(99 %)
15 diff
(98.0 %id)
DB453332 testis .d 46 to 553 1 to 508       508/508
(100 %)
1 diff
(99.9 %id)
DB454105 testis .d 46 to 415 1 to 369       369/369
(100 %)
2 diff
(99.5 %id)
BC021726 testis .d 46 to 1382 1 to 1337   tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 1337/1337
(100 %)
0 diff
(100 %id)
TI_1948122135   .d 162 to 680 130 to 649   fully sequenced,   520/649
(80 %)
5 diff
(99.3 %id)
TI_1948122488   .d 162 to 680 128 to 646   fully sequenced,   519/646
(80 %)
6 diff
(99.1 %id)
TI_1948122657   .d 162 to 561 128 to 527   fully sequenced,   400/527
(75 %)
6 diff
(98.9 %id)
TI_1948122309   .d 339 to 1198 995 to 125       871/1202
(72 %)
16 diff
(98.7 %id)
TI_1948122658   .d 500 to 1198 824 to 126   fully sequenced,   699/824
(84 %)
2 diff
(99.8 %id)
TI_1948122136   .d 619 to 1198 708 to 127   fully sequenced,   582/708
(82 %)
3 diff
(99.6 %id)
TI_1948122489   .d 619 to 1198 705 to 126   fully sequenced,   580/705
(82 %)
0 diff
(100 %id)
BQ576048 Chondrosarcoma Grade II, Left Pelvis .d 695 to 1382 706 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 688/688
(100 %)
3 diff
(99.6 %id)
BF082328 breast_normal .d 869 to 1377 525 to 19       507/525
(96 %)
0 diff
(100 %id)
AA757136   .d 893 to 1377 485 to 3       483/485
(99 %)
1 diff
(99.8 %id)
DB519544 testis .d 922 to 1382 1 to 461     Submitted on the opposite strand 461/461
(100 %)
0 diff
(100 %id)
AI187395   .d 976 to 1383 427 to 20   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 408/408
(100 %)
6 diff
(98.6 %id)
BP257529 heart .d 986 to 1376 1 to 392   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 392/392
(100 %)
2 diff
(99.5 %id)
F30051 pectoral muscle (after mastectomy) .d 1013 to 1377 1 to 365       365/366
(99 %)
26 diff
(92.9 %id)
F30830 pectoral muscle (after mastectomy) .d 1045 to 1382 1 to 338   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 338/338
(100 %)
3 diff
(99.2 %id)
CR618938 Placenta Cot 25-normalized .e 1 to 1558 1 to 1558   tiling clone,   1558/1558
(100 %)
0 diff
(100 %id)
BX378429 Placenta Cot 25-normalized .e 1 to 1038 1 to 1025   fully sequenced,   1025/1025
(100 %)
11 diff
(99.0 %id)
BX356965 Placenta Cot 25-normalized .e 1008 to 1488 545 to 71   fully sequenced,   475/545
(87 %)
16 diff
(97.1 %id)
BC057838 Placenta, normal .e 1515 to 3803 1 to 2290 I108T tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 2290/2290
(100 %)
4 diff
(99.9 %id)
TI_1948208683   .e 1799 to 2083 136 to 420   fully sequenced,   285/314
(90 %)
6 diff
(98.1 %id)
TI_1948208850   .e 1799 to 2085 134 to 420   fully sequenced,   287/313
(91 %)
6 diff
(98.1 %id)
TI_1948209021   .e 1799 to 2072 133 to 406   fully sequenced,   274/301
(91 %)
6 diff
(98.1 %id)
TI_1948209185   .e 1799 to 2540 129 to 877   fully sequenced,   749/877
(85 %)
18 diff
(98.0 %id)
TI_1948209186   .e 2033 to 2542 635 to 123   fully sequenced,   513/635
(80 %)
7 diff
(98.9 %id)
TI_1948209022   .e 2042 to 2542 625 to 125   fully sequenced,   501/625
(80 %)
1 diff
(99.9 %id)
TI_1948208684   .e 2053 to 2542 613 to 124   fully sequenced,   490/613
(79 %)
1 diff
(99.9 %id)
TI_1948208851   .e 2055 to 2542 613 to 125   fully sequenced,   489/613
(79 %)
2 diff
(99.7 %id)
AA813276   .e 2231 to 2779 547 to 1       547/547
(100 %)
4 diff
(99.3 %id)
AI027692   .e 2378 to 2810 435 to 3       433/435
(99 %)
0 diff
(100 %id)
AA843557   .e 2382 to 2779 398 to 1       398/398
(100 %)
2 diff
(99.5 %id)
R12569 liver and spleen .e 3392 to 3803 426 to 1       426/465
(91 %)
23 diff
(95.1 %id)
AL117523 testis .f 1 to 795 1 to 793 R23E N24R V25P P26F S27R ... tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 793/793
(100 %)
1 diff
(99.9 %id)
AL110460 testis .f 1 to 490 1 to 488       488/488
(100 %)
1 diff
(99.8 %id)
TI_57175533   .g 1 to 835 38 to 871   tiling clone,   834/876
(95 %)
10 diff
(98.9 %id)
BI831923 brain, medulla .g 6 to 835 1 to 829   tiling clone,   829/834
(99 %)
4 diff
(99.6 %id)
BI829225 brain, medulla .g 8 to 838 1 to 831 T126S S146X T155A tiling clone,   831/832
(99 %)
5 diff
(99.4 %id)
TI_57176142   .g 8 to 838 65 to 895 T126S S146X T155A     831/896
(92 %)
11 diff
(98.8 %id)
AL138407 melanoma (MeWo cell line) .h 1 to 609 12 to 618 G101E tiling clone,   607/607
(100 %)
3 diff
(99.6 %id)
TI_149279225   .h 14 to 371 436 to 78   AAA   359/659
(54 %)
4 diff
(99.4 %id)
BM969440 lung, Primary Lung Epithelial Cells .h 14 to 371 373 to 15   tiling clone, AAA   359/366
(98 %)
4 diff
(99.0 %id)
DB518811 testis .i 1 to 475 1 to 475 T94P tiling clone, Submitted on the opposite strand 475/476
(99 %)
3 diff
(99.4 %id)
DB542304 hippocampus .i 4 to 478 1 to 476   tiling clone, Submitted on the opposite strand 476/476
(100 %)
1 diff
(99.8 %id)
BX648198 human testis .j 1 to 3637 1 to 3635 exact tiling clone, available from DKFZ, AAA   3635/3644
(99 %)
15 diff
(99.6 %id)
AA416788   .j 493 to 749 260 to 4       257/260
(98 %)
0 diff
(100 %id)
BF932566 nervous_tumor .j 2320 to 2496 177 to 1     Submitted on the opposite strand 177/177
(100 %)
0 diff
(100 %id)
DB060237 testis .l 1 to 495 2 to 497   tiling clone, capped   496/496
(100 %)
2 diff
(99.6 %id)
BU570873 testis .l 11 to 846 1 to 847       847/869
(97 %)
21 diff
(97.6 %id)
BI459170 testis .l 12 to 728 9 to 721       713/721
(98 %)
15 diff
(98.0 %id)
BG722999 testis .l 25 to 781 1 to 757       757/757
(100 %)
5 diff
(99.4 %id)
BI560677 testis .l 25 to 793 1 to 785       785/916
(85 %)
29 diff
(96.9 %id)
DB465885.
matches multiple genes
hippocampus .l 28 to 447 1 to 419     also hits gene soheru 419/419
(100 %)
2 diff
(99.6 %id)
DB473528 hippocampus .l 28 to 517 1 to 490       490/490
(100 %)
0 diff
(100 %id)
DB024764 testis .l 29 to 587 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB052468 testis .l 29 to 600 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DB056352 testis .l 29 to 596 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DB461543 testis .l 30 to 521 1 to 492       492/492
(100 %)
1 diff
(99.8 %id)
AF429970   .l 31 to 1118 1 to 1087 exact tiling clone,   1087/1087
(100 %)
3 diff
(99.8 %id)
TI_44349667   .l 31 to 793 99 to 877       779/1008
(77 %)
30 diff
(97.1 %id)
DB050628 testis .l 32 to 570 2 to 540   capped   539/540
(99 %)
2 diff
(99.7 %id)
BU567241 testis .l 33 to 674 1 to 642       642/806
(79 %)
4 diff
(99.6 %id)
DB021226 testis .l 33 to 564 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DB055603 testis .l 33 to 516 2 to 485   capped   484/484
(100 %)
0 diff
(100 %id)
DB457733 testis .l 38 to 510 1 to 473       473/473
(100 %)
0 diff
(100 %id)
DB449328 testis .l 39 to 462 1 to 425       425/425
(100 %)
4 diff
(99.1 %id)
BI459340 testis .l 40 to 811 1 to 774       774/816
(94 %)
22 diff
(97.4 %id)
TI_57172499   .l 41 to 861 26 to 852       827/989
(83 %)
22 diff
(97.8 %id)
DB037740 testis .l 44 to 599 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
BI828942 brain, medulla .l 46 to 861 1 to 822       822/959
(85 %)
17 diff
(98.3 %id)
BI830922 brain, medulla .l 47 to 761 1 to 714       714/714
(100 %)
1 diff
(99.9 %id)
TI_57177416   .l 47 to 761 66 to 779       714/779
(91 %)
7 diff
(99.2 %id)
DB029328 testis .l 48 to 636 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DB041151 testis .l 48 to 597 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB071975 testis .l 49 to 588 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
BG718263 testis .l 52 to 853 1 to 805       805/827
(97 %)
11 diff
(98.7 %id)
BG721556 testis .l 54 to 811 6 to 763       758/763
(99 %)
15 diff
(98.1 %id)
DB050177 testis .l 54 to 624 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DB459238 testis .l 55 to 526 1 to 472       472/472
(100 %)
2 diff
(99.6 %id)
DB032610 testis .l 56 to 610 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DB048454 testis .l 56 to 615 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DB049111 testis .l 56 to 632 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DB049870 testis .l 57 to 542 2 to 487   capped   486/489
(99 %)
2 diff
(99.6 %id)
DB033957 testis .l 58 to 646 2 to 590   capped   589/589
(100 %)
2 diff
(99.7 %id)
DB023452 testis .l 59 to 601 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DB046671 testis .l 59 to 621 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB049360 testis .l 59 to 617 2 to 560   capped   559/560
(99 %)
5 diff
(99.2 %id)
DB050685 testis .l 62 to 637 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DB058764 testis .l 63 to 609 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
TI_57172992   .l 69 to 774 30 to 755       726/766
(94 %)
23 diff
(97.0 %id)
BI827759 brain, medulla .l 74 to 774 1 to 721       721/732
(98 %)
33 diff
(95.5 %id)
CD300357 testis .l 92 to 763 36 to 709       674/932
(72 %)
22 diff
(97.7 %id)
CA413053 Chondrosarcoma Grade II, Left Pelvis .m-u 1 to 666 684 to 19 exact tiling clone, AAA   666/666
(100 %)
0 diff
(100 %id)
CB241707 Human Lung Epithelial cells, lung .m-u 255 to 666 89 to 500 exact AAA Submitted on the opposite strand 412/500
(82 %)
6 diff
(98.8 %id)
BX118663   .n 1 to 627 1 to 627 H17X tiling clone, AAA   627/627
(100 %)
0 diff
(100 %id)
AI650777 Kidney .o 1 to 412 412 to 1 exact tiling clone,   412/412
(100 %)
1 diff
(99.8 %id)
AW139909   .o 1 to 413 430 to 18 exact tiling clone, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 413/413
(100 %)
2 diff
(99.6 %id)
BQ322164 colon .p-u 1 to 324 28 to 348   tiling clone,   321/348
(92 %)
6 diff
(98.3 %id)
AK025923   Gene SAMD4A, variant not shown       available from FLJ, AAA Suspected internal deletion, this clone was ignored    
AW889242 nervous_tumor Gene SAMD4A, variant not shown              
DB312700 thalamus Gene SAMD4A, variant not shown              
DA414798 thalamus Gene SAMD4A, variant not shown       capped      
AV647792 corresponding non cancerous liver tissue Gene SAMD4A, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
T40816 fetal spleen, Spleen Gene SAMD4A, variant not shown              
W87482 liver and spleen Gene SAMD4A, variant not shown              
W87510 liver and spleen Gene SAMD4A, variant not shown              
BF697247 brain, primitive neuroectoderm Gene SAMD4A, variant not shown         Suspected internal deletion, this clone was ignored    
DA652978   Gene SAMD4A, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n, .o, .p-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI