| cDNA accession Links to the sequence |
Tissue most 5' clones in red |
Match mRNA |
From bp to bp in mRNA |
From bp to bp in accs. |
Clone encodes complete protein (with AA variation) |
Features | Anomalies detected by AceView |
Accession match over (% length) |
Base differences relative to genome (% identity) |
| AA383630 | testis | .b | 2450 to 2686 | 1 to 237 | tiling clone, | 237/237 (100 %) | 1 diff (99.6 %id) | ||
| AK096777 | Prostate | .a | 64 to 2163 | 1 to 2100 | T172A | tiling clone, available from FLJ, | 2100/2100 (100 %) | 3 diff (99.9 %id) | |
| AK311704 | trachea | .d | 1 to 1125 | 2 to 1126 | tiling clone, | 1126/1126 (100 %) | 3 diff (99.8 %id) | ||
| AW898800 | nervous_normal | .b | 8420 to 8664 | 246 to 2 | 245/246 (99 %) | 0 diff (100 %id) | |||
| AW958781 | .b | 2451 to 3033 | 1 to 586 | tiling clone, | 586/587 (99 %) | 17 diff (97.2 %id) | |||
| BC121818 | PCR rescued clones | .a | 67 to 1009 | 1 to 943 | exact | tiling clone, | 943/943 (100 %) | 0 diff (100 %id) | |
| BC124554 | PCR rescued clones | .a | 67 to 1009 | 1 to 943 | exact | 943/943 (100 %) | 1 diff (99.9 %id) | ||
| BE161647 | head_neck | .a | 1390 to 1960 | 582 to 11 | tiling clone, | Submitted on the opposite strand | 572/582 (98 %) | 0 diff (100 %id) | |
| BF326714 | breast_normal | .b | 386 to 957 | 573 to 4 | tiling clone, | 570/573 (99 %) | 2 diff (99.7 %id) | ||
| BF809208 | colon_ins | .b | 1951 to 2447 | 507 to 14 | Submitted on the opposite strand | 494/510 (96 %) | 0 diff (100 %id) | ||
| BF840687 | head_neck | .b | 7943 to 8333 | 1 to 394 | 394/394 (100 %) | 6 diff (98.5 %id) | |||
| BF840691 | head_neck | .b | 7935 to 8377 | 9 to 452 | tiling clone, | 444/480 (92 %) | 3 diff (99.4 %id) | ||
| BF948330 | nervous_normal | .b | 1679 to 2102 | 2 to 424 | tiling clone, | 423/424 (99 %) | 8 diff (98.2 %id) | ||
| DA232804 | brain | .b | 1827 to 2391 | 2 to 566 | tiling clone, capped | 565/565 (100 %) | 0 diff (100 %id) | ||
| DB305535 | brain | .b | 5384 to 5909 | 526 to 1 | tiling clone, | 526/526 (100 %) | 2 diff (99.7 %id) | ||
| DA285945 | corpus callosum | .b | 30 to 524 | 2 to 497 | capped | 496/497 (99 %) | 3 diff (99.4 %id) | ||
| DA335826 | hippocampus | .b | 1 to 593 | 2 to 594 | tiling clone, capped | 593/607 (97 %) | 3 diff (99.6 %id) | ||
| BX088804 | parathyroid gland, parathyroid tumor | .b | 8488 to 8856 | 1 to 368 | 368/368 (100 %) | 1 diff (99.8 %id) | |||
| BX101919 | whole brain | .b | 4184 to 4622 | 453 to 15 | tiling clone, AAA | 439/439 (100 %) | 1 diff (99.8 %id) | ||
| F10339 | brain, total brain | .b | 4345 to 4622 | 278 to 1 | 278/278 (100 %) | 1 diff (99.7 %id) | |||
| F12733 | brain, total brain | .b | 2620 to 2914 | 1 to 296 | 296/296 (100 %) | 4 diff (98.7 %id) | |||
| CD690574 | normal nasopharynx | .b | 32 to 141 | 16 to 127 | 112/135 (82 %) | 3 diff (97.8 %id) | |||
| DA459013 | tongue, tumor tissue | .b | 22 to 591 | 2 to 571 | tiling clone, capped | 570/570 (100 %) | 0 diff (100 %id) | ||
| DA459036 | tongue, tumor tissue | .e-u | 106 to 670 | 2 to 567 | capped | 566/566 (100 %) | 1 diff (99.9 %id) | ||
| CV338569 | breast_normal | .b | 1205 to 1467 | 274 to 12 | tiling clone, | Submitted on the opposite strand | 263/274 (95 %) | 0 diff (100 %id) | |
| CV338588 | breast_normal | .b | 2589 to 2975 | 392 to 5 | tiling clone, | Submitted on the opposite strand | 388/396 (97 %) | 0 diff (100 %id) | |
| CV374989 | bladder_tumor | .b | 7527 to 7728 | 1 to 201 | 201/201 (100 %) | 6 diff (97.1 %id) | |||
| CV388439 | nervous_normal | .b | 2280 to 2691 | 461 to 49 | tiling clone, | Submitted on the opposite strand | 413/476 (86 %) | 0 diff (100 %id) | |
| EC469392 | Prostate | .b | 30 to 138 | 1 to 109 | 109/109 (100 %) | 5 diff (95.5 %id) | |||
| EF212289 | .b | 8446 to 8770 | 1 to 325 | 325/325 (100 %) | 0 diff (100 %id) | ||||
| FN081752 | breast carcinoma | .b | 333 to 427 | 1 to 95 | 95/95 (100 %) | 0 diff (100 %id) | |||
| FN129724 | breast carcinoma | .b | 8739 to 8830 | 1 to 89 | 89/89 (100 %) | 3 diff (96.7 %id) | |||
| FN133589 | breast carcinoma | .b | 37 to 129 | 89 to 1 | Submitted on the opposite strand | 89/89 (100 %) | 4 diff (95.6 %id) | ||
| FN148106 | breast carcinoma | .b | 8381 to 8464 | 81 to 1 | Submitted on the opposite strand | 81/83 (97 %) | 3 diff (96.4 %id) | ||
| FN150758 | breast carcinoma | .b | 8111 to 8214 | 101 to 1 | Submitted on the opposite strand | 101/101 (100 %) | 3 diff (97.1 %id) | ||
| FN160710 | breast carcinoma | .b | 8378 to 8477 | 100 to 1 | Submitted on the opposite strand | 100/100 (100 %) | 0 diff (100 %id) | ||
| DB478386 | hippocampus | .b | 7816 to 8300 | 1 to 487 | 487/487 (100 %) | 13 diff (97.4 %id) | |||
| DB547036 | hippocampus | .b | 8430 to 8855 | 1 to 426 | AAA | Submitted on the opposite strand | 426/426 (100 %) | 13 diff (97.0 %id) | |
| T07497 | .b | 1015 to 1346 | 1 to 332 | tiling clone, | 332/332 (100 %) | 3 diff (99.1 %id) | |||
| AV724325 | hypothalamus | .b | 8363 to 8856 | 628 to 135 | Submitted on the opposite strand | 494/628 (78 %) | 0 diff (100 %id) | ||
| R38543 | whole brain | .b | 4243 to 4627 | 399 to 5 | tiling clone, | 395/473 (83 %) | 0 diff (100 %id) | ||
| T75116 | whole brain | .b | 2642 to 3060 | 1 to 433 | tiling clone, | 433/439 (98 %) | 27 diff (93.9 %id) | ||
| AA173029 | .b | 7441 to 7898 | 7 to 460 | tiling clone, fully sequenced, | 454/460 (98 %) | 5 diff (99.0 %id) | |||
| AA176710 | .b | 7877 to 8048 | 172 to 1 | fully sequenced, | 172/172 (100 %) | 0 diff (100 %id) | |||
| AA962789 | 2 pooled tumors (clear cell type), Kidney | .b | 8374 to 8801 | 1 to 429 | AAA | Submitted on the opposite strand | 429/487 (88 %) | 6 diff (98.8 %id) | |
| AI027109 | parathyroid gland, parathyroid tumor | .b | 8522 to 8855 | 348 to 15 | AAA | 334/334 (100 %) | 0 diff (100 %id) | ||
| AI307360 | 2 pooled tumors (clear cell type), Kidney | .b | 8367 to 8814 | 1 to 448 | Submitted on the opposite strand | 448/448 (100 %) | 2 diff (99.6 %id) | ||
| AI783681 | Prostate | .b | 8582 to 8855 | 274 to 1 | 274/274 (100 %) | 0 diff (100 %id) | |||
| AI653826 | serous papillary carcinoma, high grade, 2pooled tumors, uterus | .b | 5956 to 6103 | 148 to 1 | 148/148 (100 %) | 3 diff (98.0 %id) | |||
| AI634987 | Kidney | .b | 8375 to 8768 | 1 to 394 | Submitted on the opposite strand | 394/394 (100 %) | 0 diff (100 %id) | ||
| AI688021 | colon | .b | 6926 to 7456 | 531 to 1 | tiling clone, | 531/531 (100 %) | 2 diff (99.7 %id) | ||
| AI933885 | uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors | .b | 8608 to 8855 | 248 to 1 | 248/248 (100 %) | 0 diff (100 %id) | |||
| AW294909 | .b | 8361 to 8771 | 1 to 411 | Submitted on the opposite strand | 411/411 (100 %) | 0 diff (100 %id) | |||
| BF516219 | .e-u | 305 to 710 | 406 to 1 | 406/406 (100 %) | 3 diff (99.3 %id) | ||||
| BE467711 | carcinoid, lung | .b | 7587 to 8047 | 462 to 1 | tiling clone, | 462/462 (100 %) | 1 diff (99.8 %id) | ||
| BF058494 | fibrotheoma, ovary | .e-u | 225 to 711 | 487 to 1 | tiling clone, | 487/487 (100 %) | 0 diff (100 %id) | ||
| BF431462 | Kidney | .b | 5761 to 6095 | 352 to 18 | 335/352 (95 %) | 0 diff (100 %id) | |||
| BG387404 | adenocarcinoma cell line, colon | .c | 1 to 412 | 1 to 412 | exact | tiling clone, | 412/521 (79 %) | 2 diff (99.7 %id) | |
| CB132304 | Liver | .b | 8359 to 8852 | 25 to 518 | 494/518 (95 %) | 6 diff (98.9 %id) | |||
| NM_207506.2 | .a | 1 to 2163 | 2 to 2164 | exact | RefSeq, | 2164/2164 (100 %) | 0 diff (100 %id) | ||
| NM_001101676.1 | .b | 1 to 8865 | 2 to 8866 | exact | RefSeq, AAA | 8866/8866 (100 %) | 0 diff (100 %id) | ||
| DA804594 | brain | .b | 5639 to 6185 | 2 to 548 | tiling clone, capped | 547/547 (100 %) | 1 diff (99.9 %id) | ||
| CV573326 | cornea, eye | .b | 153 to 777 | 1 to 625 | 625/625 (100 %) | 0 diff (100 %id) | |||
| DA873915 | Prostate | .a | 65 to 633 | 2 to 570 | capped | 569/569 (100 %) | 0 diff (100 %id) | ||
| DB330054 | Prostate | .a | 1653 to 2163 | 511 to 1 | 511/511 (100 %) | 1 diff (99.9 %id) | |||
| TI_149273843 | .b | 8357 to 8864 | 628 to 122 | AAA | 507/824 (61 %) | 2 diff (99.8 %id) | |||
| TI_149277157 | .b | 8337 to 8855 | 624 to 107 | AAA | 518/968 (53 %) | 7 diff (99.3 %id) | |||
| TI_149280043 | .b | 8354 to 8855 | 604 to 108 | AAA | 497/796 (62 %) | 1 diff (99.9 %id) | |||
| TI_149282917 | .b | 8356 to 8864 | 596 to 88 | AAA | 509/779 (65 %) | 26 diff (96.7 %id) | |||
| TI_149297772 | .b | 6626 to 7377 | 819 to 79 | tiling clone, AAA | 741/926 (80 %) | 12 diff (98.8 %id) | |||
| TI_149306215 | .b | 8354 to 8856 | 615 to 113 | 503/1072 (46 %) | 0 diff (100 %id) | ||||
| DB178430 | kidney, tumor tissue | .b | 6838 to 7395 | 2 to 559 | capped | 558/558 (100 %) | 0 diff (100 %id) | ||
| DB347509 | kidney, tumor tissue | .b | 8343 to 8864 | 528 to 1 | 528/528 (100 %) | 9 diff (98.3 %id) | |||
| DB212540 | trachea | .b | 32 to 590 | 2 to 561 | capped | 560/560 (100 %) | 2 diff (99.7 %id) | ||
| DB228621 | trachea | .d | 1 to 506 | 2 to 507 | capped | 506/543 (93 %) | 3 diff (99.5 %id) | ||
| DB232393 | trachea | .e-u | 75 to 579 | 2 to 506 | capped | 505/505 (100 %) | 2 diff (99.7 %id) | ||
| BM968267 | lung, Primary Lung Epithelial Cells | .b | 8354 to 8864 | 526 to 19 | AAA | 508/511 (99 %) | 3 diff (99.5 %id) | ||
| BU677531 | lung, Primary Lung Epithelial Cells | .b | 8363 to 8855 | 511 to 19 | AAA | 493/493 (100 %) | 0 diff (100 %id) | ||
| BU678996 | lung, Primary Lung Epithelial Cells | .b | 8354 to 8855 | 515 to 19 | AAA | 497/533 (93 %) | 1 diff (99.9 %id) | ||
| BU686279 | lung, Primary Lung Epithelial Cells | .b | 8354 to 8855 | 520 to 19 | AAA | 502/547 (91 %) | 1 diff (99.9 %id) | ||
| BM982700 | lung, Primary Lung Cystic Fibrosis EpithelialCells | .b | 6711 to 7377 | 683 to 17 | AAA | 667/667 (100 %) | 0 diff (100 %id) | ||
| CA311129 | Human Lung Epithelial cells, lung | .b | 8382 to 8855 | 490 to 19 | AAA | 472/472 (100 %) | 1 diff (99.8 %id) | ||
| CA450543 | Human Lung Epithelial cells, lung | .b | 8354 to 8855 | 520 to 19 | AAA | 502/534 (94 %) | 0 diff (100 %id) | ||
| CN479071 | Human Lung Epithelial cells, lung | .b | 8359 to 8855 | 515 to 19 | AAA | 497/534 (93 %) | 0 diff (100 %id) | ||
| CB241050 | Human Lung Epithelial cells, lung | .b | 8703 to 8855 | 171 to 19 | AAA | 153/153 (100 %) | 0 diff (100 %id) | ||
| CB241290 | Human Lung Epithelial cells, lung | .b | 8354 to 8865 | 525 to 19 | tiling clone, AAA | 507/544 (93 %) | 1 diff (99.9 %id) | ||
| CB243825 | Human Lung Epithelial cells, lung | .b | 8354 to 8865 | 525 to 19 | AAA | 507/544 (93 %) | 2 diff (99.7 %id) | ||
| BM728028 | eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid | .e-u | 10 to 692 | 1 to 681 | 681/681 (100 %) | 5 diff (99.3 %id) | |||
| BM930432 | eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid | .e-u | 10 to 721 | 1 to 709 | P32L H33T V34W G35E E36R ... | tiling clone, | 709/783 (90 %) | 12 diff (98.5 %id) | |
| TI_151757976 | .e-u | 11 to 718 | 747 to 41 | 707/846 (83 %) | 0 diff (100 %id) | ||||
| TI_151761481 | .e-u | 1 to 718 | 758 to 41 | tiling clone, | 718/1049 (68 %) | 0 diff (100 %id) | |||
| BU677531 | lung, Primary Lung Epithelial Cells | .b | 8363 to 8855 | 511 to 19 | AAA | 493/493 (100 %) | 0 diff (100 %id) | ||
| BU678996 | lung, Primary Lung Epithelial Cells | .b | 8354 to 8855 | 515 to 19 | AAA | 497/533 (93 %) | 1 diff (99.9 %id) | ||
| BU678996 | UI-CF-DU1-aat-m-11-0-UI | SAMD12.bAug10 | 8855 | 19 | UI-CF-DU1-aat-m-11-0-UI | 497 | 1 | ||
| BU686279 | UI-CF-DU1-adn-o-23-0-UI | SAMD12.bAug10 | 8855 | 19 | UI-CF-DU1-adn-o-23-0-UI | 502 | 1 | ||
| BU686279 | UI-CF-DU1-adn-o-23-0-UI | SAMD12.bAug10 | 8855 | 19 | UI-CF-DU1-adn-o-23-0-UI | 502 | 1 | ||
| BM982700 | UI-CF-EN1-acq-b-12-0-UI | SAMD12.bAug10 | 7377 | 17 | UI-CF-EN1-acq-b-12-0-UI | 667 | 0 | ||
| BM982700 | UI-CF-EN1-acq-b-12-0-UI | SAMD12.bAug10 | 7377 | 17 | UI-CF-EN1-acq-b-12-0-UI | 667 | 0 | ||
| CA311129 | UI-CF-FN0-afc-d-11-0-UI | SAMD12.bAug10 | 8855 | 19 | UI-CF-FN0-afc-d-11-0-UI | 472 | 1 | ||
| CA311129 | UI-CF-FN0-afc-d-11-0-UI | SAMD12.bAug10 | 8855 | 19 | UI-CF-FN0-afc-d-11-0-UI | 472 | 1 | ||
| CA450543 | UI-CF-FN0-afg-k-05-0-UI | SAMD12.bAug10 | 8855 | 19 | UI-CF-FN0-afg-k-05-0-UI | 502 | 0 | ||
| CA450543 | UI-CF-FN0-afg-k-05-0-UI | SAMD12.bAug10 | 8855 | 19 | UI-CF-FN0-afg-k-05-0-UI | 502 | 0 | ||
| CN479071 | UI-CF-FN0-afv-m-23-0-UI | SAMD12.bAug10 | 8855 | 19 | UI-CF-FN0-afv-m-23-0-UI | 497 | 0 | ||
| CN479071 | UI-CF-FN0-afv-m-23-0-UI | SAMD12.bAug10 | 8855 | 19 | UI-CF-FN0-afv-m-23-0-UI | 497 | 0 | ||
| CB241050 | UI-CF-FN0-afx-i-02-0-UI | SAMD12.bAug10 | 8855 | 19 | UI-CF-FN0-afx-i-02-0-UI | 153 | 0 | ||
| CB241050 | UI-CF-FN0-afx-i-02-0-UI | SAMD12.bAug10 | 8855 | 19 | UI-CF-FN0-afx-i-02-0-UI | 153 | 0 | ||
| CB241290 | UI-CF-FN0-afy-g-13-0-UI | SAMD12.bAug10 | 8865 | 19 | UI-CF-FN0-afy-g-13-0-UI | 507 | 1 | ||
| CB241290 | UI-CF-FN0-afy-g-13-0-UI | SAMD12.bAug10 | 8865 | 19 | UI-CF-FN0-afy-g-13-0-UI | 507 | 1 | ||
| CB243825 | UI-CF-FN0-agg-i-07-0-UI | SAMD12.bAug10 | 8865 | 19 | UI-CF-FN0-agg-i-07-0-UI | 507 | 2 | ||
| CB243825 | UI-CF-FN0-agg-i-07-0-UI | SAMD12.bAug10 | 8865 | 19 | UI-CF-FN0-agg-i-07-0-UI | 507 | 2 | ||
| BM728028 | UI-E-EJ0-ait-j-17-0-UI | SAMD12.eAug10-unspliced | 692 | 681 | UI-E-EJ0-ait-j-17-0-UI | 681 | 5 | ||
| BM728028 | UI-E-EJ0-ait-j-17-0-UI | SAMD12.eAug10-unspliced | 692 | 681 | UI-E-EJ0-ait-j-17-0-UI | 681 | 5 | ||
| BM930432 | UI-E-EJ1-ajm-a-19-0-UI | SAMD12.eAug10-unspliced | 721 | 709 | UI-E-EJ1-ajm-a-19-0-UI | 709 | 12 | ||
| BM930432 | UI-E-EJ1-ajm-a-19-0-UI | SAMD12.eAug10-unspliced | 721 | 709 | UI-E-EJ1-ajm-a-19-0-UI | 709 | 12 | ||
| TI_151757976 | UIACBCB_UI-E-EJ0-ait-j-17-0-UI | SAMD12.eAug10-unspliced | 718 | 41 | UIACBCB_UI-E-EJ0-ait-j-17-0-UI | 707 | 0 | ||
| TI_151761481 | UIACBCB_UI-E-EJ1-ajm-a-19-0-UI | SAMD12.eAug10-unspliced | 718 | 41 | UIACBCB_UI-E-EJ1-ajm-a-19-0-UI | 718 | 0 |
| ? | Gene Summary | Gene on genome | mRNA:.a, .b, .c, .d, .e-u | Alternative mRNAs features, proteins, introns, exons, sequences | Expression Tissue | Function, regulation, related genes C |