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Gene SAFB2andPLAC2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
473 supporting clones for gene SAFB2andPLAC2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA000557   .a 1 to 509 2 to 518   tiling clone, capped   517/517
(100 %)
11 diff
(97.9 %id)
DA813163   .a 27 to 589 2 to 564   tiling clone, capped   563/563
(100 %)
1 diff
(99.9 %id)
DB475007 hippocampus .a 81 to 579 1 to 499       499/499
(100 %)
0 diff
(100 %id)
NM_014649.2   .a 81 to 3397 1 to 3317 exact RefSeq, AAA   3317/3317
(100 %)
0 diff
(100 %id)
DB049971 testis .a 82 to 644 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA143052 alzheimer cortex .a 157 to 724 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA304621 hippocampus .a 157 to 716 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA910127   .a 163 to 720 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA244347 brain .a 167 to 750 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA506329 brain .a 175 to 724 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DA073585 cerebellum .a 190 to 753 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
BP355777   .a 196 to 775 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DA973663 synovial membrane tissue from rheumatioidarthritis .a 211 to 748 33 to 571   capped   539/570
(94 %)
6 diff
(99.0 %id)
BU595484 mixed (pool of 40 RNAs) .a 215 to 984 1 to 776       776/778
(99 %)
14 diff
(98.3 %id)
DR002947 fetal brain .a 218 to 631 9 to 423       415/423
(98 %)
2 diff
(99.6 %id)
DA357746 subthalamic nucleus .a 220 to 793 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
BP235113 coronary artery .a 221 to 812 1 to 588       588/588
(100 %)
8 diff
(98.7 %id)
DA923988 small intestine .a 221 to 725 2 to 506   capped   505/505
(100 %)
1 diff
(99.9 %id)
BP356634 mammary gland .a 221 to 802 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DB250729 uterus .a 221 to 811 2 to 592   capped   591/591
(100 %)
2 diff
(99.7 %id)
DB262083 uterus .a 221 to 790 2 to 571   capped   570/570
(100 %)
4 diff
(99.3 %id)
DA067508 cerebellum .a 222 to 801 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA126149 cerebellum .a 222 to 816 2 to 604   capped   603/603
(100 %)
9 diff
(98.6 %id)
DA177233 amygdala .a 222 to 764 2 to 545   capped   544/544
(100 %)
2 diff
(99.7 %id)
DA184195 amygdala .a 222 to 727 2 to 509   capped   508/508
(100 %)
2 diff
(99.7 %id)
DA394577 thalamus .a 222 to 625 2 to 405   capped   404/404
(100 %)
0 diff
(100 %id)
DA411726 thalamus .a 222 to 777 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA451806 tongue, tumor tissue .a 222 to 793 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA493925 brain .a 222 to 732 2 to 517   capped   516/516
(100 %)
6 diff
(98.9 %id)
DA623689 Kidney .a 222 to 771 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB048403 testis .a 222 to 772 2 to 562   capped   561/561
(100 %)
10 diff
(98.3 %id)
DB135157 thymus .a 222 to 762 2 to 545   capped   544/544
(100 %)
3 diff
(99.5 %id)
DB147619 thymus .a 222 to 380 2 to 160   capped   159/159
(100 %)
0 diff
(100 %id)
DB165047 thymus .a 222 to 710 2 to 490   capped   489/489
(100 %)
0 diff
(100 %id)
DB261307 uterus .a 222 to 802 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DB268672 uterus .a 222 to 760 2 to 540   capped   539/540
(99 %)
1 diff
(99.9 %id)
DA204327 brain .a 227 to 812 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
BI463726 testis .a 227 to 907 1 to 686       686/727
(94 %)
17 diff
(97.7 %id)
BP231659 muscle .a 228 to 809 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA063962 cerebellum .a 229 to 384 2 to 157   capped   156/156
(100 %)
2 diff
(98.8 %id)
DA205096 brain .a 229 to 799 2 to 577   capped   576/576
(100 %)
7 diff
(98.8 %id)
DA210978 brain .a 229 to 717 2 to 490   capped   489/489
(100 %)
0 diff
(100 %id)
DA339108 hippocampus .a 229 to 810 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA361731 subthalamic nucleus .a 229 to 789 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
AI168419 pooled .a 229 to 664 1 to 436     Submitted on the opposite strand 436/436
(100 %)
0 diff
(100 %id)
BE856759 pooled .a 229 to 850 1 to 622     Submitted on the opposite strand 622/622
(100 %)
10 diff
(98.4 %id)
BP363787 lung .a 230 to 811 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA045761 bladder .a 231 to 711 2 to 482   capped   481/481
(100 %)
0 diff
(100 %id)
BP275019 Kidney .a 232 to 813 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BP312007 brain .a 232 to 812 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA187886 amygdala .a 233 to 772 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA242734 brain .a 233 to 811 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA258611 caudate nucleus .a 233 to 785 10 to 564   capped   555/555
(100 %)
3 diff
(99.5 %id)
DA455813 tongue, tumor tissue .a 233 to 795 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA933210 Spleen .a 233 to 797 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB137086 thymus .a 233 to 761 2 to 534   capped   533/533
(100 %)
5 diff
(99.1 %id)
BC025279 Pancreas, epithelioid carcinoma .a 235 to 1872 1 to 1638   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1638/1686
(97 %)
1 diff
(100.0 %id)
BC001216 Lung, small cell carcinoma .a 235 to 1444 1 to 1210   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1210/1248
(96 %)
4 diff
(99.7 %id)
BQ223887 melanotic melanoma, skin .a 235 to 905 1 to 678       676/987
(68 %)
16 diff
(98.4 %id)
BU161744 melanotic melanoma, skin .a 238 to 1051 1 to 824       824/873
(94 %)
14 diff
(98.4 %id)
DA267512 caudate nucleus .a 239 to 781 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DA697410   .a 239 to 751 2 to 514   capped   513/513
(100 %)
0 diff
(100 %id)
DB144724 thymus .a 239 to 607 2 to 370   capped   369/369
(100 %)
0 diff
(100 %id)
BG819138 anaplastic oligodendroglioma with 1p/19qloss, brain .a 244 to 989 1 to 747       747/747
(100 %)
5 diff
(99.4 %id)
AW068873 Bone, Hip .a 248 to 784 9 to 551       543/552
(98 %)
7 diff
(98.8 %id)
BE263341 lung, small cell carcinoma .a 254 to 899 1 to 642   available from MGC,   642/737
(87 %)
9 diff
(98.8 %id)
D50928   .a 257 to 3398 1 to 3142 exact tiling clone, available from KIAA,   3142/3233
(97 %)
3 diff
(100.0 %id)
BC014784 Brain, anaplastic oligodendroglioma with1p/19q loss .a 258 to 1870 1 to 1613   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1613/1615
(99 %)
7 diff
(99.6 %id)
BM804507 lymph, lymphoma, cell line .a 258 to 1149 1 to 904       904/1159
(77 %)
27 diff
(97.7 %id)
BE888782 leiomyosarcoma, uterus .a 270 to 944 1 to 675       675/675
(100 %)
1 diff
(99.9 %id)
BQ427596 melanotic melanoma, skin .a 281 to 905 1 to 628       628/833
(75 %)
11 diff
(98.7 %id)
BP366522 thymus .a 285 to 866 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
BF806983 colon_ins .a 312 to 629 367 to 43     Submitted on the opposite strand 325/367
(88 %)
12 diff
(96.8 %id)
CT003397 T-Lymphocytes .a 376 to 1021 1 to 648       648/651
(99 %)
3 diff
(99.6 %id)
CR996434 T-Lymphocytes .a 376 to 886 1 to 511       511/511
(100 %)
0 diff
(100 %id)
CT003864 T-Lymphocytes .a 376 to 1086 1 to 715       713/719
(99 %)
8 diff
(98.9 %id)
CR981670 T-Lymphocytes .a 376 to 1075 1 to 700       700/704
(99 %)
3 diff
(99.6 %id)
BG177990 adenocarcinoma, cell line, Prostate .a 470 to 1241 1 to 770       770/924
(83 %)
30 diff
(96.8 %id)
W26086 eye, retina .a 477 to 896 436 to 17       420/476
(88 %)
1 diff
(99.8 %id)
BM174910 hippocampus .a 484 to 928 1 to 445       445/445
(100 %)
0 diff
(100 %id)
BM929597 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 518 to 1247 1 to 730       730/730
(100 %)
0 diff
(100 %id)
TI_151760191   .a 518 to 1269 792 to 43       750/1024
(73 %)
1 diff
(100.0 %id)
BE408763 choriocarcinoma, placenta .a 604 to 1276 1 to 673       673/674
(99 %)
3 diff
(99.6 %id)
BE830657 marrow .a 645 to 776 132 to 1       132/135
(97 %)
4 diff
(97.1 %id)
CN425953 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 695 to 1213 1 to 519       519/519
(100 %)
0 diff
(100 %id)
AI223838 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 749 to 1213 460 to 1       460/460
(100 %)
8 diff
(98.3 %id)
BE252761 eye, retinoblastoma .a 773 to 1484 1 to 708       708/712
(99 %)
8 diff
(98.9 %id)
BG283932 adenocarcinoma, cell line, Prostate .a 850 to 1456 1 to 605       605/611
(99 %)
4 diff
(99.4 %id)
BF920527 nervous_tumor .a 893 to 1303 1 to 414       416/414
(100 %)
9 diff
(97.9 %id)
BQ920969 leiomyosarcoma, uterus .a 913 to 1736 1 to 826       826/925
(89 %)
4 diff
(99.6 %id)
DB211598.
matches multiple genes
trachea .a 936 to 1188 2 to 254   capped also hits gene SAFB 253/253
(100 %)
0 diff
(100 %id)
AI439537 B-cell, chronic lymphotic leukemia .a 1034 to 1883 845 to 1       845/845
(100 %)
29 diff
(96.6 %id)
W27364.
matches multiple genes
eye, retina .a 1050 to 1437 434 to 42     also hits gene SAFB 393/573
(68 %)
0 diff
(100 %id)
BU527192 epidermoid carcinoma, cell line, lung .a 1058 to 1927 1 to 874       874/886
(98 %)
9 diff
(99.0 %id)
BI259256 cervical carcinoma cell line, cervix .a 1060 to 1808 1 to 750       748/750
(99 %)
4 diff
(99.5 %id)
BQ055063 lymph, lymphoma, cell line .a 1152 to 1739 1 to 592       592/1342
(44 %)
9 diff
(99.4 %id)
BQ058036 lymph, lymphoma, cell line .a 1152 to 2157 1 to 1010       1010/1047
(96 %)
13 diff
(98.8 %id)
BQ883292 lymph, lymphoma, cell line .a 1152 to 1927 1 to 781       781/860
(90 %)
8 diff
(99.1 %id)
BF981759 duodenal adenocarcinoma, cell line, small intestine .a 1168 to 1931 1 to 755       757/1061
(71 %)
20 diff
(98.2 %id)
BQ344363.
matches multiple genes
nervous_tumor .a 1218 to 1334 143 to 28     also hits gene SAFB 116/143
(81 %)
0 diff
(100 %id)
BQ718762 sympathetic trunk .a 1286 to 1869 1 to 586       586/970
(60 %)
21 diff
(97.9 %id)
AW835592 leiomios .a 1320 to 1843 527 to 5       523/527
(99 %)
2 diff
(99.7 %id)
BG323706 Kidney, renal cell adenocarcinoma .a 1328 to 1858 1 to 533       531/722
(73 %)
8 diff
(98.9 %id)
AW579147 denis_drash .a 1338 to 1877 1 to 543       543/543
(100 %)
15 diff
(97.3 %id)
AI439609 B-cell, chronic lymphotic leukemia .a 1346 to 1881 539 to 3       537/539
(99 %)
9 diff
(98.4 %id)
BG824375 adenocarcinoma cell line, colon .a 1353 to 2003 1 to 653       651/654
(99 %)
12 diff
(98.2 %id)
BM172397 adenocarcinoma cell line, colon .a 1353 to 1474 9 to 131       123/138
(89 %)
11 diff
(92.1 %id)
BU861252 mixed (pool of 40 RNAs) .a 1365 to 1851 1 to 489       489/861
(56 %)
14 diff
(98.4 %id)
DR763229 embryonic stem .a 1411 to 2191 1 to 781       781/781
(100 %)
0 diff
(100 %id)
BG682566 skin, squamous cell carcinoma .a 1461 to 2049 19 to 617       599/618
(96 %)
22 diff
(96.5 %id)
BG740002 skin .a 1481 to 2074 1 to 632       555/799
(69 %)
33 diff
(95.9 %id)
AI354335 esophagus, squamous cell carcinoma .a 1486 to 2143 658 to 1       658/825
(79 %)
16 diff
(98.1 %id)
BI855633 breast, mammary adenocarcinoma, cell line .a 1486 to 2254 12 to 805       720/807
(89 %)
43 diff
(94.7 %id)
TI_57186263   .a 1486 to 2254 65 to 858       720/807
(89 %)
43 diff
(94.7 %id)
BF981607 duodenal adenocarcinoma, cell line, small intestine .a 1531 to 2291 1 to 756       759/952
(79 %)
17 diff
(98.3 %id)
AW195072 Kidney .a 1534 to 1878 348 to 4       345/350
(98 %)
0 diff
(100 %id)
AW610246 stomach .a 1544 to 2172 627 to 2       626/714
(87 %)
8 diff
(98.9 %id)
BE694030 breast .a 1556 to 1909 11 to 359       351/359
(97 %)
12 diff
(96.7 %id)
BQ677445 melanotic melanoma, cell line, skin .a 1564 to 2212 1 to 656       656/1037
(63 %)
11 diff
(99.0 %id)
BI007074 kidney_tumor .a 1565 to 1913 353 to 6       348/353
(98 %)
0 diff
(100 %id)
AI474454 Prostate .a 1566 to 1882 318 to 1       318/322
(98 %)
1 diff
(99.7 %id)
AI860686 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 1585 to 2137 553 to 1       553/570
(97 %)
1 diff
(99.9 %id)
BU683955 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 1585 to 1898 314 to 1       314/316
(99 %)
3 diff
(99.1 %id)
AI971176 Prostate .a 1599 to 1851 268 to 16       253/268
(94 %)
3 diff
(98.9 %id)
BU181609 eye, retinoblastoma .a 1615 to 2494 1 to 881       881/881
(100 %)
4 diff
(99.6 %id)
AW265229 endometrioid ovarian metastasis, ovary .a 1618 to 1881 1 to 264     Submitted on the opposite strand 264/268
(98 %)
24 diff
(91.1 %id)
BG423854 Kidney, renal cell adenocarcinoma .a 1653 to 2245 1 to 599       599/965
(62 %)
20 diff
(98.0 %id)
BG419696 Kidney, renal cell adenocarcinoma .a 1653 to 2242 1 to 590       590/590
(100 %)
1 diff
(99.9 %id)
BQ072142 brain, neuroblastoma, cell line .a 1664 to 2635 13 to 990       978/1059
(92 %)
22 diff
(98.0 %id)
BX283817 brain, neuroblastoma, cell line .a 1675 to 2203 1 to 529       529/529
(100 %)
0 diff
(100 %id)
BQ069067 brain, neuroblastoma, cell line .a 1678 to 2361 82 to 772       691/1361
(50 %)
23 diff
(98.4 %id)
CD245842 White Matter .a 1739 to 2329 27 to 615       588/933
(63 %)
13 diff
(98.7 %id)
TI_149277002   .a 1740 to 2115 454 to 81   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 374/1063
(35 %)
0 diff
(100 %id)
BU677438 lung, Primary Lung Epithelial Cells .a 1740 to 2115 379 to 6   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 374/491
(76 %)
0 diff
(100 %id)
BF337685 brain, glioblastoma with EGFR amplification .a 1804 to 2578 1 to 773       773/863
(89 %)
22 diff
(97.5 %id)
BE395118 endometrium, adenocarcinoma cell line, uterus .a 1831 to 2212 1 to 382       382/392
(97 %)
1 diff
(99.8 %id)
AW246278 lung, small cell carcinoma .a 1864 to 2351 10 to 497       488/497
(98 %)
6 diff
(98.8 %id)
BE312900 brain, neuroblastoma .a 1870 to 2212 9 to 353       345/363
(95 %)
8 diff
(97.8 %id)
BE395325 endometrium, adenocarcinoma cell line, uterus .a 1937 to 2212 1 to 276       276/286
(96 %)
1 diff
(99.7 %id)
BE542561 cervix .a 1949 to 2504 1 to 570       570/1050
(54 %)
27 diff
(97.5 %id)
TI_151744655   .a 1963 to 2764 54 to 849     Submitted on the opposite strand 796/1046
(76 %)
16 diff
(98.5 %id)
BG420328 Kidney, renal cell adenocarcinoma .a 1971 to 2242 1 to 272       272/272
(100 %)
1 diff
(99.7 %id)
BG423645 Kidney, renal cell adenocarcinoma .a 1971 to 2242 1 to 272       272/272
(100 %)
1 diff
(99.7 %id)
BG421750 Kidney, renal cell adenocarcinoma .a 1971 to 2242 1 to 276       276/276
(100 %)
5 diff
(98.2 %id)
BF204586 muscle, rhabdomyosarcoma .a 1972 to 2242 1 to 269       269/269
(100 %)
3 diff
(98.9 %id)
BF205250 muscle, rhabdomyosarcoma .a 1972 to 2242 1 to 270       270/270
(100 %)
2 diff
(99.3 %id)
BE769460 prostate_tumor .a 1986 to 2392 1 to 403       403/403
(100 %)
10 diff
(97.6 %id)
CN352781 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2015 to 2772 1 to 758       758/758
(100 %)
0 diff
(100 %id)
BM828242 stomach .a 2028 to 2266 1 to 240       240/240
(100 %)
10 diff
(95.9 %id)
BM552232 astrocytoma grade IV, cell line, brain .a 2066 to 2931 1 to 882       882/1051
(83 %)
20 diff
(98.1 %id)
BG436879 large cell carcinoma, lung .a 2078 to 2242 1 to 165       165/165
(100 %)
1 diff
(99.4 %id)
BG760039 B-cells, primary B-cells from tonsils (cell line) .a 2079 to 2242 1 to 164       164/164
(100 %)
1 diff
(99.4 %id)
BG756790 B-cells, primary B-cells from tonsils (cell line) .a 2112 to 2242 1 to 131       131/131
(100 %)
1 diff
(99.3 %id)
BG758448 B-cells, primary B-cells from tonsils (cell line) .a 2112 to 2242 1 to 133       133/133
(100 %)
3 diff
(97.8 %id)
BG756660 B-cells, primary B-cells from tonsils (cell line) .a 2112 to 2242 1 to 131       131/131
(100 %)
1 diff
(99.3 %id)
BM741943 stomach .a 2145 to 2773 1 to 629       629/629
(100 %)
0 diff
(100 %id)
BM764466 stomach .a 2145 to 2764 1 to 620       620/620
(100 %)
0 diff
(100 %id)
BM765758 stomach .a 2145 to 2606 1 to 462       462/462
(100 %)
0 diff
(100 %id)
BM772135 stomach .a 2145 to 2764 1 to 620       620/620
(100 %)
0 diff
(100 %id)
BM746190 stomach .a 2146 to 2721 1 to 576       576/576
(100 %)
0 diff
(100 %id)
BM753564 stomach .a 2146 to 2427 1 to 284       284/284
(100 %)
6 diff
(97.9 %id)
BG257978 embryonal carcinoma, cell line, testis .a 2150 to 2928 1 to 797       797/1065
(74 %)
31 diff
(97.1 %id)
BQ672926 epidermoid carcinoma, cell line, salivary gland .a 2158 to 2998 1 to 842       842/930
(90 %)
6 diff
(99.4 %id)
BG288571 bladder, transitional cell papilloma, cell line .a 2162 to 2870 1 to 714       714/715
(99 %)
22 diff
(97.0 %id)
BG281705 melanotic melanoma, skin .a 2165 to 2242 1 to 78       78/78
(100 %)
1 diff
(98.8 %id)
BG472591 eye, retinoblastoma .a 2167 to 2242 1 to 76       76/76
(100 %)
2 diff
(97.4 %id)
BG473115 eye, retinoblastoma .a 2167 to 2242 1 to 76       76/76
(100 %)
1 diff
(98.7 %id)
BQ923804 sciatic nerve .a 2167 to 2931 1 to 772       772/893
(86 %)
26 diff
(97.1 %id)
CK430953 eye, lacrimal gland .a 2173 to 2817 1 to 645       645/645
(100 %)
0 diff
(100 %id)
AV748670 Pituitary .a 2233 to 2504 1 to 270       270/290
(93 %)
6 diff
(98.0 %id)
BX461805 brain, fetal brain .a 2244 to 2939 1032 to 351       682/1032
(66 %)
51 diff
(95.1 %id)
BQ647525 hepatocellular carcinoma, cell line, Liver .a 2263 to 3090 1 to 840       840/942
(89 %)
26 diff
(97.3 %id)
AV701967 adrenal gland .a 2281 to 2700 1 to 420       420/421
(99 %)
1 diff
(99.8 %id)
BU789818 insulinoma, Pancreas .a 2281 to 2792 1 to 512       512/512
(100 %)
4 diff
(99.3 %id)
BU195637 leiomyosarcoma, uterus .a 2360 to 3184 1 to 845       840/931
(90 %)
22 diff
(97.7 %id)
CB162445 Liver .a 2400 to 2956 1 to 557       557/557
(100 %)
2 diff
(99.7 %id)
BM559198 amelanotic melanoma, cell line, skin .a 2412 to 2998 1 to 590       590/880
(67 %)
8 diff
(99.1 %id)
BM562624 amelanotic melanoma, cell line, skin .a 2412 to 3192 1 to 787       787/1052
(74 %)
11 diff
(99.0 %id)
BM912800 amelanotic melanoma, cell line, skin .a 2413 to 3143 1 to 731       731/1032
(70 %)
16 diff
(98.5 %id)
BG170516 hypernephroma, cell line, Kidney .a 2452 to 3109 1 to 653       663/946
(70 %)
82 diff
(91.4 %id)
BQ427778 leiomyosarcoma, uterus .a 2532 to 2845 1 to 317       317/956
(33 %)
9 diff
(99.1 %id)
BF791918 adrenal cortex carcinoma, cell line, adrenal gland .a 2542 to 3002 1 to 464       460/810
(56 %)
14 diff
(98.3 %id)
CA841393 Pancreas, Purified pancreatic islet .a 2587 to 2844 1 to 258       258/361
(71 %)
6 diff
(98.4 %id)
CA952770 Pancreas, Purified pancreatic islet .a 2607 to 2957 1 to 351       351/351
(100 %)
0 diff
(100 %id)
CN352779 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2618 to 3174 1 to 555       555/555
(100 %)
7 diff
(98.8 %id)
BQ271895 Pancreas, Purified pancreatic islet .a 2625 to 3028 1 to 404   fully sequenced,   404/404
(100 %)
0 diff
(100 %id)
BM930525 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2675 to 3334 1 to 663   AAA   663/663
(100 %)
2 diff
(99.7 %id)
TI_151761675   .a 2684 to 3332 734 to 82   AAA   653/948
(68 %)
5 diff
(99.5 %id)
BG034908 adenocarcinoma, cell line, Liver .a 2686 to 3296 1 to 611       611/1141
(53 %)
9 diff
(99.3 %id)
CN352777 embryonic stem cells, DMSO-treated H9 cellline .a 2695 to 3303 1 to 609       609/609
(100 %)
5 diff
(99.2 %id)
BE252868 eye, retinoblastoma .a 2704 to 3305 1 to 609       609/622
(97 %)
19 diff
(97.0 %id)
BU194913 melanotic melanoma, skin .a 2828 to 3343 1 to 516   AAA   516/516
(100 %)
2 diff
(99.7 %id)
CR998637 T-Lymphocytes .a 2854 to 3398 1 to 545   tiling clone,   545/559
(97 %)
1 diff
(99.9 %id)
AA831654 germinal center B cell .a 2903 to 3338 472 to 38   AAA   435/435
(100 %)
4 diff
(99.1 %id)
BQ354814 head_neck .a 2931 to 3243 21 to 338       320/349
(91 %)
18 diff
(94.9 %id)
BU950966 Pancreas, Purified pancreatic islet .a 2961 to 3397 10 to 446   fully sequenced, AAA   437/446
(97 %)
6 diff
(98.7 %id)
BQ271588 Pancreas, Purified pancreatic islet .a 2967 to 3398 441 to 8   fully sequenced,   434/441
(98 %)
1 diff
(99.8 %id)
AA554701 breast .a 2968 to 3398 430 to 1       430/430
(100 %)
1 diff
(99.8 %id)
BU789547 insulinoma, Pancreas .a 2990 to 3397 423 to 18   AAA   406/628
(64 %)
14 diff
(97.8 %id)
CA952549 Pancreas, Purified pancreatic islet .a 3110 to 3398 294 to 6       289/294
(98 %)
0 diff
(100 %id)
BU952413 Pancreas, Purified pancreatic islet .a 3237 to 3399 163 to 1   fully sequenced,   163/163
(100 %)
1 diff
(99.4 %id)
DA077429 cerebellum .b 1 to 546 2 to 550   tiling clone, to resequence, capped   549/549
(100 %)
3 diff
(99.5 %id)
CD244572 testis .b 388 to 1163 1 to 779   tiling clone,   779/851
(91 %)
24 diff
(97.2 %id)
CV423130 nervous_tumor .b 636 to 875 259 to 21     Submitted on the opposite strand 239/259
(92 %)
0 diff
(100 %id)
CB265361 adipose .b 693 to 933 1 to 241   tiling clone,   241/241
(100 %)
0 diff
(100 %id)
BE167334 head_neck .b 879 to 1196 326 to 9   tiling clone, Submitted on the opposite strand 318/354
(89 %)
0 diff
(100 %id)
DB297800 cerebellum .b 1917 to 2446 530 to 1   tiling clone, to resequence,   530/530
(100 %)
1 diff
(99.9 %id)
DR000920 fetal brain .c 1 to 692 1 to 692   tiling clone,   692/692
(100 %)
5 diff
(99.3 %id)
BE618005 eye, retinoblastoma .c 47 to 704 1 to 659     Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 659/713
(92 %)
8 diff
(98.9 %id)
CR984882 T-Lymphocytes .c 144 to 727 1 to 584   tiling clone,   584/610
(95 %)
2 diff
(99.7 %id)
AA478202 ovarian tumor, ovary .c 196 to 685 488 to 1     Submitted on the opposite strand 488/488
(100 %)
4 diff
(99.2 %id)
CN352778 embryonic stem cells, DMSO-treated H9 cellline .d 1 to 579 1 to 580   tiling clone,   580/587
(98 %)
2 diff
(99.7 %id)
BY796474 eye .d 517 to 828 1 to 312   tiling clone,   312/312
(100 %)
0 diff
(100 %id)
BI457426 epithelioid carcinoma cell line, Pancreas .e 1 to 645 1 to 653   tiling clone,   653/737
(88 %)
23 diff
(96.9 %id)
CU453930 epidermis .e 594 to 1270 691 to 15   tiling clone, Submitted on the opposite strand 677/691
(97 %)
0 diff
(100 %id)
BQ304608 breast .e 1189 to 1617 432 to 1   tiling clone,   432/434
(99 %)
28 diff
(93.6 %id)
BE694025 breast .e 1216 to 1532 45 to 368   tiling clone,   324/368
(88 %)
6 diff
(98.4 %id)
BF747673 breast .e 1309 to 1751 455 to 13   tiling clone, Submitted on the opposite strand 443/455
(97 %)
0 diff
(100 %id)
BF747578 breast .e 1346 to 1758 419 to 7     Submitted on the opposite strand 413/419
(98 %)
0 diff
(100 %id)
BF351704 head_neck .e 1412 to 1761 352 to 3   tiling clone,   350/352
(99 %)
7 diff
(98.1 %id)
BI597727 brain, hypothalamus .f 1 to 343 1 to 343   tiling clone,   343/343
(100 %)
5 diff
(98.6 %id)
TI_45213488   .f 6 to 887 130 to 1022 Y76L G77R S78L D79R K80Q ... tiling clone,   893/1036
(86 %)
50 diff
(95.2 %id)
DB493804 hypothalamus .f 12 to 516 1 to 507   tiling clone,   507/508
(99 %)
9 diff
(98.3 %id)
AI864471 anaplastic oligodendroglioma, brain .f 571 to 975 409 to 4       406/409
(99 %)
0 diff
(100 %id)
BE552076 pooled germ cell tumors .f 580 to 978 399 to 1       399/399
(100 %)
13 diff
(96.8 %id)
EC536317 Prostate .f 592 to 698 1 to 106       106/107
(99 %)
2 diff
(98.2 %id)
BE783469 eye, retinoblastoma .f 600 to 973 1 to 374       374/374
(100 %)
5 diff
(98.7 %id)
AI201716 anaplastic oligodendroglioma, brain .f 611 to 978 366 to 1       366/366
(100 %)
7 diff
(98.1 %id)
BX331753 Neuroblastoma Cot 25-normalized .f 613 to 913 59 to 359   AAA   301/359
(83 %)
7 diff
(98.1 %id)
CR745876 adenocarcinoma, Pancreas .f 616 to 978 377 to 15   tiling clone, AAA   363/363
(100 %)
0 diff
(100 %id)
BM709587 eye, optic nerve .f 618 to 978 1 to 361       361/361
(100 %)
1 diff
(99.8 %id)
DB544892 hippocampus .f 631 to 978 1 to 354     Submitted on the opposite strand 354/354
(100 %)
6 diff
(98.4 %id)
AI795963 Kidney .f 641 to 979 339 to 1       339/508
(66 %)
7 diff
(98.7 %id)
AA873544 Kidney .f 655 to 979 325 to 1       325/325
(100 %)
0 diff
(100 %id)
AA769843   .f 665 to 914 251 to 2       250/251
(99 %)
0 diff
(100 %id)
T48740 placenta .f 682 to 952 1 to 272   fully sequenced,   272/272
(100 %)
1 diff
(99.7 %id)
AI373654 Kidney .f 688 to 978 290 to 1       290/290
(100 %)
1 diff
(99.7 %id)
AW136754   .f 688 to 978 308 to 18   AAA   291/291
(100 %)
0 diff
(100 %id)
BM669066.
matches multiple genes
eye, RPE and Choroid .f 689 to 978 309 to 19   AAA also hits gene ABCC5 291/291
(100 %)
2 diff
(99.4 %id)
AI587127 adenocarcinoma, Pancreas .f 690 to 979 291 to 1       291/295
(98 %)
4 diff
(98.7 %id)
AI570828 adenocarcinoma, Pancreas .f 690 to 978 289 to 1       289/293
(98 %)
0 diff
(100 %id)
AI651718 pooled germ cell tumors .f 690 to 978 289 to 1       289/293
(98 %)
0 diff
(100 %id)
AI951620 fibrotheoma, ovary .f 691 to 978 288 to 1       288/292
(98 %)
0 diff
(100 %id)
BE219513 carcinoid, lung .f 691 to 977 286 to 1       286/286
(100 %)
1 diff
(99.7 %id)
BM708690 eye, RPE and Choroid .f 692 to 816 125 to 1     Submitted on the opposite strand 125/125
(100 %)
0 diff
(100 %id)
AI654809 pooled germ cell tumors .f 693 to 978 287 to 1       287/292
(98 %)
1 diff
(99.7 %id)
AI860699 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .f 693 to 978 287 to 1       287/287
(100 %)
2 diff
(99.4 %id)
AW274891 pooled germ cell tumors .f 694 to 979 287 to 2       286/287
(99 %)
0 diff
(100 %id)
BU734521 eye, RPE and Choroid .f 694 to 978 304 to 19   AAA   286/286
(100 %)
2 diff
(99.4 %id)
BF058245 fibrotheoma, ovary .f 696 to 978 283 to 1       283/283
(100 %)
2 diff
(99.3 %id)
AW732003 lung, small cell carcinoma .f 697 to 979 288 to 6       283/288
(98 %)
0 diff
(100 %id)
AW473429 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .f 698 to 978 292 to 12   AAA   281/281
(100 %)
1 diff
(99.7 %id)
BE674194 carcinoid, lung .f 698 to 997 302 to 3   tiling clone,   300/302
(99 %)
0 diff
(100 %id)
AI368611 anaplastic oligodendroglioma, brain .f 701 to 924 241 to 18   AAA   224/225
(99 %)
4 diff
(98.3 %id)
BM665034 eye, optic nerve .f 701 to 985 303 to 19   AAA   285/285
(100 %)
1 diff
(99.7 %id)
AI434232 lymph node, lymphoma, follicular mixed small and largecell .f 702 to 920 218 to 1       218/218
(100 %)
1 diff
(99.6 %id)
AW081226 colon, moderately differentiated adenocarcinoma .f 703 to 926 225 to 2       224/225
(99 %)
0 diff
(100 %id)
AI655006 pooled germ cell tumors .f 709 to 978 269 to 1       269/269
(100 %)
1 diff
(99.7 %id)
AI564851 anaplastic oligodendroglioma, brain .f 711 to 924 231 to 18   AAA   214/214
(100 %)
2 diff
(99.1 %id)
BP397275 pancreatic islet .f 723 to 968 1 to 244     Submitted on the opposite strand 244/244
(100 %)
2 diff
(99.2 %id)
AI286078 pooled .f 733 to 919 208 to 22   AAA   187/187
(100 %)
3 diff
(98.4 %id)
AW470860 2 pooled tumors (clear cell type), Kidney .f 733 to 978 262 to 17   AAA   246/246
(100 %)
5 diff
(98.0 %id)
AW196500 pooled germ cell tumors .f 739 to 978 241 to 1       241/241
(100 %)
1 diff
(99.6 %id)
T48741 placenta .f 746 to 978 234 to 1   fully sequenced,   234/234
(100 %)
1 diff
(99.6 %id)
GD142576   .f 844 to 978 1 to 134   AAA   134/134
(100 %)
4 diff
(97.1 %id)
DA892604 salivary gland .g 1 to 841 2 to 837 exact tiling clone, capped   836/837
(99 %)
9 diff
(99.0 %id)
BQ224551 melanotic melanoma, skin .g 38 to 616 1 to 580   tiling clone,   580/879
(65 %)
10 diff
(98.9 %id)
DB330545 salivary gland .g 1143 to 1631 490 to 1   tiling clone,   490/493
(99 %)
1 diff
(99.8 %id)
BF680114 Prostate .g 1219 to 1574 1 to 356   AAA   356/356
(100 %)
0 diff
(100 %id)
AA368399 placenta .h-u 1 to 278 279 to 1   tiling clone,   279/279
(100 %)
2 diff
(99.3 %id)
BM718827 eye, fetal eye .h-u 210 to 1017 1 to 802   tiling clone,   802/802
(100 %)
8 diff
(99.1 %id)
AA251584 germinal center B cell .h-u 633 to 1051 1 to 418   tiling clone,   418/418
(100 %)
1 diff
(99.8 %id)
BM706831 eye, optic nerve .h-u 1011 to 1616 9 to 614   tiling clone,   606/614
(98 %)
6 diff
(99.1 %id)
BM706909 eye, optic nerve .h-u 1011 to 1607 9 to 605       597/605
(98 %)
9 diff
(98.6 %id)
TI_154054982   .h-u 1640 to 2428 866 to 88   tiling clone, AAA   779/948
(82 %)
12 diff
(98.8 %id)
TI_149296831   .h-u 1709 to 2487 866 to 88   tiling clone, AAA   779/827
(94 %)
27 diff
(96.8 %id)
CA418516 Chondrosarcoma Grade II, Left Pelvis .h-u 1735 to 2428 713 to 19   AAA   695/695
(100 %)
1 diff
(99.9 %id)
TI_159710388   .h-u 1845 to 2488 61 to 704   tiling clone, Submitted on the opposite strand 644/1063
(60 %)
1 diff
(100.0 %id)
BM680714 eye, fetal eye .h-u 1851 to 2487 655 to 19   AAA   637/637
(100 %)
3 diff
(99.6 %id)
AI215785 carcinoid, lung .h-u 1859 to 2161 1 to 303     Submitted on the opposite strand 303/303
(100 %)
2 diff
(99.4 %id)
CB046383 2 pooled tumors (clear cell type), Kidney .h-u 1881 to 2085 1 to 204       204/204
(100 %)
16 diff
(92.2 %id)
BU684464 lung, Primary Lung Cystic Fibrosis EpithelialCells .h-u 1888 to 2487 622 to 19   AAA   604/604
(100 %)
6 diff
(99.1 %id)
CB046382 2 pooled tumors (clear cell type), Kidney .h-u 2190 to 2487 329 to 31   AAA   299/299
(100 %)
10 diff
(96.7 %id)
BU728152 eye, optic nerve .h-u 2198 to 2487 309 to 19   AAA   291/291
(100 %)
2 diff
(99.4 %id)
BU728235 eye, optic nerve .h-u 2198 to 2487 309 to 19   AAA   291/291
(100 %)
2 diff
(99.4 %id)
AK296552 thalamus .i 1 to 1298 1 to 1298   tiling clone,   1298/1298
(100 %)
0 diff
(100 %id)
DA418127 thalamus .i 2 to 517 2 to 517   capped   516/516
(100 %)
0 diff
(100 %id)
AV725008 hypothalamus .i 546 to 1263 1 to 719       719/719
(100 %)
13 diff
(98.2 %id)
CV406759 testis_normal .i 571 to 968 1 to 397       397/564
(70 %)
11 diff
(98.1 %id)
CV406741 testis_normal .i 572 to 968 1 to 398       398/549
(72 %)
12 diff
(97.9 %id)
DA171143 amygdala .i 702 to 1273 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
BM718536 eye, fetal eye .i 1160 to 1757 1 to 598   tiling clone, Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 598/598
(100 %)
0 diff
(100 %id)
BM683580 eye, fetal eye .i 1820 to 2514 695 to 1   tiling clone, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 695/695
(100 %)
7 diff
(99.0 %id)
DB302594 amygdala .i 2074 to 2529 456 to 1   tiling clone,   456/459
(99 %)
1 diff
(99.8 %id)
BF328019 breast_normal .j 1 to 324 357 to 33   tiling clone,   325/357
(91 %)
0 diff
(100 %id)
CB241540 Human Lung Epithelial cells, lung .j 207 to 757 551 to 1 E144K E145K tiling clone,   551/561
(98 %)
0 diff
(100 %id)
AW383803 head_neck .j 290 to 597 1 to 309       309/309
(100 %)
6 diff
(98.1 %id)
BE891318 melanotic melanoma, skin .k 1 to 583 1 to 583 G49A H50T V51W V52C P53Q ... tiling clone,   583/583
(100 %)
7 diff
(98.8 %id)
DB381619 placenta .l-u 1 to 555 554 to 1 L20P H21P T22Y L23T M24Y ... tiling clone,   554/557
(99 %)
5 diff
(99.2 %id)
CV404969 placenta_normal .l-u 62 to 262 1 to 199       199/199
(100 %)
7 diff
(96.5 %id)
DW433924 Liver .l-u 111 to 353 17 to 260       244/260
(93 %)
6 diff
(97.7 %id)
DW451459 Liver .l-u 111 to 471 17 to 377   tiling clone,   361/377
(95 %)
6 diff
(98.5 %id)
R06674 liver and spleen .l-u 235 to 555 384 to 54   AAA Submitted on the opposite strand 331/336
(98 %)
10 diff
(97.1 %id)
DA635220 Kidney .m 1 to 566 2 to 567 exact tiling clone, capped   566/566
(100 %)
2 diff
(99.7 %id)
BE348636 carcinoid, lung .n 1 to 402 1 to 401 G61A G62A R63E A64P M65* tiling clone, Submitted on the opposite strand 401/401
(100 %)
2 diff
(99.6 %id)
AI651737 pooled germ cell tumors .o 1 to 709 720 to 4 D2X E4K N9X N12X M13Y ... tiling clone,   714/729
(97 %)
11 diff
(98.5 %id)
BG420517 Kidney, renal cell adenocarcinoma .o 57 to 651 1 to 595       595/595
(100 %)
10 diff
(98.4 %id)
BE018969 Kidney, renal cell adenocarcinoma .o 74 to 392 1 to 319   tiling clone,   319/319
(100 %)
0 diff
(100 %id)
BM013789 breast, mammary adenocarcinoma, cell line .o 379 to 706 1 to 328   tiling clone, AAA   328/328
(100 %)
4 diff
(98.8 %id)
TI_59391718   .o 379 to 706 90 to 417   AAA   328/328
(100 %)
4 diff
(98.8 %id)
BQ027354 mixed .o 426 to 650 243 to 19   AAA   225/225
(100 %)
0 diff
(100 %id)
DA059417 cerebellum .p 1 to 555 2 to 556 exact tiling clone, capped   555/556
(99 %)
1 diff
(99.9 %id)
AI867329 colon, colon tumor, RER+ .q 1 to 254 254 to 1   tiling clone,   254/254
(100 %)
1 diff
(99.7 %id)
AI867338 colon, colon tumor, RER+ .q 105 to 263 159 to 1   tiling clone,   159/159
(100 %)
1 diff
(99.4 %id)
BI089059 cervix .r 1 to 472 483 to 11 exact tiling clone, Submitted on the opposite strand 473/483
(97 %)
0 diff
(100 %id)
AW070561 breast, four pooled high-grade tumors, including twoprimary tumors and two metastatic to ovary .s 1 to 452 452 to 1 exact tiling clone,   452/454
(99 %)
1 diff
(99.8 %id)
CB998323 placenta, pre-eclamptic placenta .t -9 to 700 24 to 740 exact     717/852
(84 %)
25 diff
(97.1 %id)
AK075215 placenta .t 1 to 2465 3 to 2467 exact available from FLJ,   2467/2467
(100 %)
6 diff
(99.8 %id)
BP313831 mammary gland .t 1 to 577 2 to 582 exact     582/582
(100 %)
8 diff
(98.7 %id)
DA833085 placenta .t 1 to 701 3 to 703 exact capped   702/702
(100 %)
3 diff
(99.6 %id)
DA416193 thalamus .t 1 to 565 2 to 567 D39X L40P R41A A42R Q43P ... capped   566/566
(100 %)
2 diff
(99.7 %id)
DA442835 tongue, tumor tissue .t 1 to 563 2 to 565 V49X S50E S51L W52L K53E ... capped   564/564
(100 %)
2 diff
(99.7 %id)
DA831456 placenta .t 1 to 638 2 to 644 T36A capped   643/643
(100 %)
10 diff
(98.5 %id)
DA833736 placenta .t 1 to 671 2 to 668 exact capped   667/670
(99 %)
12 diff
(98.3 %id)
DA834694 placenta .t 1 to 518 2 to 522 L37A S38Q D39R L40P R41A ... capped   521/521
(100 %)
4 diff
(99.3 %id)
DA834771 placenta .t 1 to 708 2 to 711 exact capped   710/718
(98 %)
9 diff
(98.8 %id)
DA847489 placenta .t 1 to 495 2 to 496 exact capped   495/495
(100 %)
2 diff
(99.6 %id)
DA849036 placenta .t 1 to 531 2 to 532 A24T W52* capped   531/531
(100 %)
2 diff
(99.7 %id)
DA859316 placenta .t 1 to 566 2 to 567 exact tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
BM044802 carcinoma, cell line, Prostate .t 43 to 917 1 to 885       885/885
(100 %)
63 diff
(92.9 %id)
CR591932 Placenta Cot 25-normalized .t 103 to 1520 1 to 1418       1418/1418
(100 %)
0 diff
(100 %id)
TI_158436109   .t 120 to 614 46 to 545     Submitted on the opposite strand 500/1183
(42 %)
25 diff
(97.9 %id)
AI168216 pooled .t 121 to 525 1 to 405     Submitted on the opposite strand 405/405
(100 %)
5 diff
(98.8 %id)
BF435374 pooled .t 121 to 608 1 to 488     Submitted on the opposite strand 488/488
(100 %)
2 diff
(99.6 %id)
BF111924 pooled .t 121 to 589 1 to 469     Submitted on the opposite strand 469/469
(100 %)
1 diff
(99.8 %id)
BX336315 Placenta Cot 25-normalized .t 136 to 977 29 to 865       837/865
(96 %)
15 diff
(98.3 %id)
AI188408 placenta .t 145 to 614 1 to 470     Submitted on the opposite strand 470/470
(100 %)
1 diff
(99.8 %id)
AI472917 pooled .t 145 to 558 1 to 414     Submitted on the opposite strand 414/418
(99 %)
4 diff
(99.1 %id)
AI468031 pooled .t 145 to 370 1 to 226     Submitted on the opposite strand 226/226
(100 %)
0 diff
(100 %id)
AI468020 pooled .t 145 to 547 1 to 403     Submitted on the opposite strand 403/403
(100 %)
2 diff
(99.6 %id)
AI813602 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .t 145 to 606 1 to 462     Submitted on the opposite strand 462/462
(100 %)
5 diff
(99.0 %id)
H87875 placenta .t 150 to 473 20 to 338       319/338
(94 %)
10 diff
(97.1 %id)
BX099577 placenta .t 157 to 736 602 to 25     Submitted on the opposite strand 578/602
(96 %)
1 diff
(99.9 %id)
R63335 placenta .t 178 to 338 1 to 157   fully sequenced, Submitted on the opposite strand 157/157
(100 %)
6 diff
(96.2 %id)
BF986256 placenta_normal .t 211 to 695 13 to 494       482/494
(97 %)
6 diff
(98.8 %id)
DA872071 Prostate .t 271 to 803 2 to 534   capped   533/533
(100 %)
2 diff
(99.7 %id)
AF370401   .t 289 to 1521 371 to 1603 exact AAA   1603/1603
(100 %)
2 diff
(99.9 %id)
DA402867 thalamus .t 289 to 432 330 to 473 L8P S9V R10A W11L K12E ... capped   472/472
(100 %)
3 diff
(99.4 %id)
BG702379 brain, hippocampus .t 289 to 669 380 to 766 E2A G3M L4E R5W R6A ...     766/934
(82 %)
87 diff
(90.7 %id)
BC036545 Brain, hippocampus .t 289 to 3644 338 to 3691 H66Q tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 3691/3691
(100 %)
27 diff
(99.3 %id)
BI546854 brain, hippocampus .t 289 to 727 358 to 817 E2S R6A L8C S9C W11A ... available from MGC,   817/894
(91 %)
49 diff
(94.6 %id)
CB961602 placenta, pre-eclamptic placenta .t 289 to 708 360 to 784 exact     757/786
(96 %)
15 diff
(98.1 %id)
CF593609 Human Placenta, placenta .t 289 to 635 363 to 720 exact     691/880
(78 %)
25 diff
(97.2 %id)
TI_44167280   .t 289 to 727 415 to 874 G3W L4A R5A R6C L8V ...     816/951
(85 %)
40 diff
(95.8 %id)
NR_027064.1   .t 289 to 3651 331 to 3693 exact RefSeq, tiling clone,   3693/3693
(100 %)
0 diff
(100 %id)
DA855968 placenta .t 289 to 547 329 to 587 exact capped   586/586
(100 %)
0 diff
(100 %id)
DA861778 placenta .t 289 to 549 307 to 567 exact capped   566/566
(100 %)
1 diff
(99.9 %id)
BG002353 placenta_normal .t 305 to 794 493 to 4       490/493
(99 %)
6 diff
(98.8 %id)
BC120980 PCR rescued clones .t 306 to 1634 1 to 1329       1329/1329
(100 %)
3 diff
(99.8 %id)
BC120981 PCR rescued clones .t 306 to 1634 1 to 1329       1329/1329
(100 %)
3 diff
(99.8 %id)
R63334 placenta .t 314 to 684 382 to 1   fully sequenced, Submitted on the opposite strand 382/382
(100 %)
18 diff
(95.3 %id)
DR003507 hippocampus .t 390 to 800 1 to 411       411/411
(100 %)
11 diff
(97.4 %id)
AI160797 placenta .t 465 to 851 390 to 4       387/390
(99 %)
0 diff
(100 %id)
N39767.
matches multiple genes
placenta .t 467 to 970 1 to 505     also hits gene SULF2 505/506
(99 %)
12 diff
(97.7 %id)
BP306102   .t 526 to 1107 1 to 583       583/583
(100 %)
5 diff
(99.2 %id)
BG010394 placenta_normal .t 831 to 1281 3 to 452       450/452
(99 %)
6 diff
(98.7 %id)
BX389525 Placenta Cot 25-normalized .t 848 to 1520 1 to 671       671/671
(100 %)
4 diff
(99.5 %id)
R66685 placenta .t 861 to 1225 1 to 369   fully sequenced,   369/369
(100 %)
11 diff
(97.1 %id)
AI188436 placenta .t 977 to 1521 566 to 22   AAA   545/545
(100 %)
0 diff
(100 %id)
AI650551 pooled germ cell tumors .t 1089 to 1523 464 to 30   AAA   435/435
(100 %)
14 diff
(96.8 %id)
R67403 placenta .t 1195 to 1530 338 to 1   fully sequenced,   338/338
(100 %)
10 diff
(97.1 %id)
CU444754 epidermis .t 1215 to 1412 9 to 206       198/229
(86 %)
3 diff
(98.7 %id)
BF368827 placenta_normal .t 1577 to 1958 17 to 398       382/398
(95 %)
12 diff
(97.0 %id)
AA310449   .t 1608 to 2035 1 to 429       429/429
(100 %)
3 diff
(99.4 %id)
BU565949 mixed (pool of 40 RNAs) .t 1650 to 2087 1 to 442       442/1043
(42 %)
7 diff
(99.4 %id)
AA778110 heart .t 1973 to 2453 491 to 12       480/491
(97 %)
0 diff
(100 %id)
DB379648 placenta .t 1982 to 2465 486 to 1       486/502
(96 %)
18 diff
(96.5 %id)
TI_157614187   .t 1984 to 2497 571 to 56       516/993
(51 %)
0 diff
(100 %id)
BQ023603 placenta .t 2006 to 2482 477 to 1       477/477
(100 %)
0 diff
(100 %id)
DB377126 placenta .t 2016 to 2459 450 to 7       444/457
(97 %)
0 diff
(100 %id)
DB380638 placenta .t 2034 to 2465 429 to 1       429/430
(99 %)
17 diff
(96.1 %id)
BM020521 astrocytoma grade IV, cell line, brain .t 2060 to 2387 394 to 725       682/725
(94 %)
22 diff
(97.0 %id)
TI_59391309   .t 2060 to 2387 491 to 822       681/724
(94 %)
21 diff
(97.1 %id)
CF528300 placenta .t 2061 to 2482 422 to 1       422/422
(100 %)
1 diff
(99.8 %id)
BC047562 Brain, hypothalamus .t 2438 to 3644 1 to 1209   available from MGC, AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 1209/1209
(100 %)
1 diff
(100.0 %id)
DB506457 hypothalamus .t 2440 to 2909 1 to 473       473/475
(99 %)
6 diff
(98.8 %id)
BG354568 placenta .t 2524 to 3643 1 to 1120       1120/1120
(100 %)
0 diff
(100 %id)
BG698785 skin .t 2559 to 3341 1 to 782       782/783
(99 %)
7 diff
(99.2 %id)
BG697752 skin .t 2591 to 3378 1 to 788       788/788
(100 %)
3 diff
(99.7 %id)
BU859960 adenocarcinoma, cell line, breast .t 2621 to 3480 1 to 863       863/925
(93 %)
22 diff
(97.7 %id)
R81914 placenta .t 2699 to 3101 1 to 408       408/408
(100 %)
7 diff
(98.3 %id)
BM930985 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .t 2737 to 3445 1 to 708       708/708
(100 %)
1 diff
(99.9 %id)
AL365412   .t 2786 to 3647 113 to 974       862/1001
(86 %)
2 diff
(99.9 %id)
BG179814 adenocarcinoma, cell line, Prostate .t 2868 to 3492 1 to 625       625/625
(100 %)
0 diff
(100 %id)
TI_149285104   .t 2892 to 3649 852 to 95   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 758/1124
(67 %)
10 diff
(99.2 %id)
TI_44343857   .t 2911 to 3318 624 to 1053       726/1054
(68 %)
70 diff
(93.4 %id)
R68967 placenta .t 2929 to 3264 1 to 341       341/342
(99 %)
7 diff
(98.0 %id)
BX106036 placenta .t 2939 to 3634 1 to 696       696/696
(100 %)
1 diff
(99.9 %id)
R31251 placenta .t 2939 to 3244 1 to 314       314/314
(100 %)
13 diff
(95.9 %id)
R11081 liver and spleen .t 2948 to 3336 1 to 393       393/394
(99 %)
11 diff
(97.3 %id)
R11113.
matches multiple genes
liver and spleen .t 2948 to 3375 1 to 436     also hits gene MEAF6 436/439
(99 %)
13 diff
(97.1 %id)
R23795 placenta .t 2948 to 3326 1 to 389       389/402
(96 %)
17 diff
(95.8 %id)
R31449 placenta .t 2948 to 3306 1 to 361     Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 361/361
(100 %)
10 diff
(97.3 %id)
BU680747 lung .t 2964 to 3649 700 to 14   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 687/687
(100 %)
2 diff
(99.8 %id)
R78579 placenta .t 3008 to 3365 1 to 363   fully sequenced, Submitted on the opposite strand 363/363
(100 %)
5 diff
(98.7 %id)
TI_157611352   .t 3046 to 3649 688 to 88   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 601/601
(100 %)
85 diff
(85.9 %id)
R74272 placenta .t 3060 to 3347 1 to 297   fully sequenced,   297/297
(100 %)
1 diff
(99.7 %id)
N74749 liver and spleen .t 3060 to 3380 1 to 326   fully sequenced,   326/326
(100 %)
7 diff
(97.9 %id)
BM713968 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .t 3088 to 3649 1 to 562   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 562/562
(100 %)
0 diff
(100 %id)
R69709 placenta .t 3090 to 3482 1 to 393       393/394
(99 %)
2 diff
(99.5 %id)
AI743780 pooled .t 3122 to 3650 529 to 1       529/529
(100 %)
1 diff
(99.9 %id)
BF431923 pooled .t 3133 to 3647 517 to 3       515/517
(99 %)
0 diff
(100 %id)
AW662172 2 pooled high-grade transitional celltumors, genitourinary tract .t 3136 to 3649 526 to 13   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 514/514
(100 %)
0 diff
(100 %id)
BQ367300 placenta_normal .t 3144 to 3463 1 to 321       321/321
(100 %)
13 diff
(96.0 %id)
BG006965 placenta_normal .t 3149 to 3438 294 to 4       291/294
(98 %)
0 diff
(100 %id)
BP398190 pancreatic islet .t 3151 to 3649 1 to 500     Submitted on the opposite strand 500/500
(100 %)
1 diff
(99.8 %id)
BF109397 pooled .t 3161 to 3649 489 to 1       489/489
(100 %)
0 diff
(100 %id)
BF055371 pooled .t 3171 to 3648 478 to 1       478/478
(100 %)
0 diff
(100 %id)
AI864672 pooled .t 3173 to 3650 478 to 1       478/478
(100 %)
0 diff
(100 %id)
DB577750 hypothalamus .t 3181 to 3649 1 to 470     Submitted on the opposite strand 470/470
(100 %)
9 diff
(98.1 %id)
AI168247 pooled .t 3192 to 3648 457 to 1       457/457
(100 %)
0 diff
(100 %id)
AI167225 pooled .t 3194 to 3651 458 to 1       458/458
(100 %)
3 diff
(99.4 %id)
AI827287 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .t 3216 to 3644 443 to 15   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 429/429
(100 %)
4 diff
(99.1 %id)
AA035267 uterus .t 3217 to 3626 430 to 1       430/430
(100 %)
20 diff
(95.4 %id)
AI218695 pooled .t 3219 to 3649 431 to 1       431/431
(100 %)
0 diff
(100 %id)
AI436037 pooled .t 3232 to 3648 417 to 1       417/417
(100 %)
0 diff
(100 %id)
AI207389 placenta .t 3251 to 3651 404 to 4       401/404
(99 %)
0 diff
(100 %id)
AI091243 pooled .t 3253 to 3643 419 to 30   AAA   390/396
(98 %)
0 diff
(100 %id)
AI148749 placenta .t 3267 to 3643 377 to 1       377/377
(100 %)
0 diff
(100 %id)
AI207365 placenta .t 3267 to 3651 388 to 4       385/388
(99 %)
0 diff
(100 %id)
AI123021 pooled .t 3294 to 3648 355 to 2       354/355
(99 %)
0 diff
(100 %id)
R11033.
matches multiple genes
liver and spleen .t 3299 to 3643 352 to 1     also hits gene PARP14 352/354
(99 %)
8 diff
(97.8 %id)
R11058.
matches multiple genes
liver and spleen .t 3299 to 3643 349 to 1     also hits gene ORC3L 349/349
(100 %)
4 diff
(98.9 %id)
R74186 placenta .t 3317 to 3624 317 to 1   fully sequenced,   317/317
(100 %)
4 diff
(98.8 %id)
AI088233 heart .t 3334 to 3650 317 to 1       317/317
(100 %)
0 diff
(100 %id)
R78580 placenta .t 3335 to 3653 327 to 1   fully sequenced, Submitted on the opposite strand 327/327
(100 %)
6 diff
(98.2 %id)
BP398313 pancreatic islet .t 3348 to 3649 1 to 302     Submitted on the opposite strand 302/302
(100 %)
0 diff
(100 %id)
N52505 liver and spleen .t 3350 to 3648 302 to 1   fully sequenced,   302/302
(100 %)
0 diff
(100 %id)
T47593 placenta .t 3358 to 3644 1 to 293   fully sequenced,   293/293
(100 %)
7 diff
(97.7 %id)
BU752001 placenta .t 3376 to 3647 291 to 20   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 272/274
(99 %)
0 diff
(100 %id)
BM987765 mixed .t 3378 to 3649 285 to 14   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 272/272
(100 %)
0 diff
(100 %id)
R31450 placenta .t 3400 to 3649 272 to 20   AAA Possibly primed on the genome, locally A rich (18/18 A in genome downstream of last aligned base) 253/254
(99 %)
3 diff
(98.9 %id)
R23743 placenta .t 3425 to 3650 226 to 1       226/228
(99 %)
1 diff
(99.6 %id)
AA716708 heart .t 3443 to 3649 207 to 1       207/207
(100 %)
0 diff
(100 %id)
AI497885 pooled .t 3443 to 3649 207 to 1       207/207
(100 %)
0 diff
(100 %id)
T47594 placenta .t 3497 to 3645 149 to 1   fully sequenced,   149/149
(100 %)
2 diff
(98.7 %id)
R31195 placenta .t 3580 to 3651 74 to 3       72/74
(97 %)
0 diff
(100 %id)
DA319246 hippocampus .u 1 to 566 2 to 567   tiling clone, capped   566/566
(100 %)
2 diff
(99.7 %id)
R06617 liver and spleen .u 739 to 1151 1 to 423   tiling clone, Submitted on the opposite strand 423/423
(100 %)
21 diff
(95.1 %id)
BF817023 colon_ins .u 1083 to 1669 599 to 13   tiling clone, Submitted on the opposite strand 587/599
(97 %)
4 diff
(99.4 %id)
DB308997 hippocampus .u 3013 to 3346 335 to 1   tiling clone,   335/335
(100 %)
1 diff
(99.8 %id)
AK123246 amygdala .va 1 to 2260 1 to 2260 exact tiling clone, available from FLJ,   2260/2260
(100 %)
2 diff
(100.0 %id)
CV406758 testis_normal .va 9 to 268 1 to 260       260/432
(60 %)
8 diff
(98.2 %id)
AW274447 Kidney .va 431 to 822 393 to 3   tiling clone,   391/393
(99 %)
0 diff
(100 %id)
CN287955 embryonic stem cells, cell lines H1, H7, andH9 .va 600 to 838 1 to 239       239/239
(100 %)
1 diff
(99.6 %id)
DA168263.
matches multiple genes
amygdala .va 716 to 1225 2 to 512   capped also hits gene SAFB 511/511
(100 %)
2 diff
(99.7 %id)
BG432062.
matches multiple genes
Kidney .va 742 to 1425 1 to 686   tiling clone, also hits gene SAFB 686/807
(85 %)
19 diff
(97.7 %id)
BE168667.
matches multiple genes
head_neck .va 778 to 970 1 to 189     also hits gene SAFB 189/189
(100 %)
6 diff
(96.9 %id)
CA395703.
matches multiple genes
eye, RPE/choroid .va 930 to 1441 1 to 512     also hits gene SAFB 512/512
(100 %)
0 diff
(100 %id)
BU609116 Human Lung Epithelial cells, lung .va 2081 to 2260 198 to 19   AAA   180/243
(74 %)
5 diff
(98.0 %id)
CN352780 embryonic stem cells, DMSO-treated H9 cellline .vb 1 to 608 4 to 610   tiling clone,   610/610
(100 %)
1 diff
(99.9 %id)
BF964321 nervous_normal .vb 291 to 719 440 to 12 K70M tiling clone,   429/440
(97 %)
0 diff
(100 %id)
BE148324 head_neck .vc-u 1 to 498 23 to 521 F23C tiling clone,   499/533
(93 %)
9 diff
(98.4 %id)
L44397   .vc-u 477 to 708 1 to 237   tiling clone,   237/237
(100 %)
7 diff
(97.1 %id)
BE175496 head_neck .vd-u 1 to 467 470 to 4 exact   Submitted on the opposite strand 467/491
(95 %)
0 diff
(100 %id)
DB138648 thymus .vd-u 1 to 539 2 to 540 exact tiling clone, capped   539/539
(100 %)
0 diff
(100 %id)
BE175563 head_neck .vd-u 109 to 467 372 to 14     Submitted on the opposite strand 359/372
(96 %)
0 diff
(100 %id)
AI190598.
matches multiple genes
  .vd-u 219 to 342 139 to 16   AAA also hits gene SAFB 124/124
(100 %)
1 diff
(99.2 %id)
GD146806   .ve-u 1 to 249 1 to 248   tiling clone, AAA   248/248
(100 %)
2 diff
(99.2 %id)
BE815324 breast_normal .ve-u 129 to 523 20 to 413 exact tiling clone,   394/413
(95 %)
6 diff
(98.6 %id)
BE008047 breast_normal .ve-u 135 to 318 39 to 221   tiling clone,   183/221
(82 %)
6 diff
(97.3 %id)
AI904289 breast Gene SAFB2andPLAC2, variant not shown              
AJ706368 bone marrow Gene SAFB2andPLAC2, variant not shown       AAA      
AK300501 Prostate Gene SAFB2andPLAC2, variant not shown         This clone was ignored    
BF746277 breast Gene SAFB2andPLAC2, variant not shown         This clone was ignored    
BF746347 breast Gene SAFB2andPLAC2, variant not shown         This clone was ignored    
BF898529 marrow Gene SAFB2andPLAC2, variant not shown         Submitted on the opposite strand    
BF930250 nervous_tumor Gene SAFB2andPLAC2, variant not shown         Submitted on the opposite strand    
CR736428 liver and spleen Gene SAFB2andPLAC2, variant not shown         Suspected internal deletion, this clone was ignored    
CV335011 uterus_tumor Gene SAFB2andPLAC2, variant not shown         Submitted on the opposite strand    
DB543832 hippocampus Gene SAFB2andPLAC2, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
T61600 Liver Gene SAFB2andPLAC2, variant not shown         This clone was ignored    
T61684 Liver Gene SAFB2andPLAC2, variant not shown         This clone was ignored    
N58378 liver and spleen Gene SAFB2andPLAC2, variant not shown         Suspected internal deletion, this clone was ignored    
N77965 liver and spleen Gene SAFB2andPLAC2, variant not shown         Suspected internal deletion, this clone was ignored    
AI657188 pooled germ cell tumors Gene SAFB2andPLAC2, variant not shown              
AI808653 pooled Gene SAFB2andPLAC2, variant not shown              
AI766654 B-cell, chronic lymphotic leukemia Gene SAFB2andPLAC2, variant not shown              
AW236627 pooled germ cell tumors Gene SAFB2andPLAC2, variant not shown              
BF531022 anaplastic oligodendroglioma with 1p/19qloss, brain Gene SAFB2andPLAC2, variant not shown       available from MGC, This clone was ignored    
BF983629 duodenal adenocarcinoma, cell line, small intestine Gene SAFB2andPLAC2, variant not shown         This clone was ignored    
BQ423923 eye, retinoblastoma Gene SAFB2andPLAC2, variant not shown         Suspected internal deletion, this clone was ignored    
CA941845 Pancreas, Purified pancreatic islet Gene SAFB2andPLAC2, variant not shown         This clone was ignored    
CA942105 Pancreas, Purified pancreatic islet Gene SAFB2andPLAC2, variant not shown         This clone was ignored    
CF786059 mixed Gene SAFB2andPLAC2, variant not shown         This clone was ignored    
TI_45133517   Gene SAFB2andPLAC2, variant not shown         This clone was ignored    
DC375907 brain Gene SAFB2andPLAC2, variant not shown         This clone was ignored    
DC383208 Prostate Gene SAFB2andPLAC2, variant not shown         This clone was ignored    
DA940814 Spleen Gene SAFB2andPLAC2, variant not shown       capped      
DB333169 Spleen Gene SAFB2andPLAC2, variant not shown              
DB141578 thymus Gene SAFB2andPLAC2, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB236878 trachea Gene SAFB2andPLAC2, variant not shown       capped      
DB350357 trachea Gene SAFB2andPLAC2, variant not shown              
DB283171 uterus Gene SAFB2andPLAC2, variant not shown       capped This clone was ignored    
DB352627 uterus Gene SAFB2andPLAC2, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h-u, .i, .j, .k, .l-u, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc-u, .vd-u, .ve-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI