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Gene RYR1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
128 supporting clones for gene RYR1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BP231595 muscle .a 1 to 583 1 to 582   tiling clone,   582/582
(100 %)
17 diff
(97.1 %id)
NM_000540.2   .a 2 to 15392 1 to 15391 exact RefSeq,   15391/15391
(100 %)
0 diff
(100 %id)
CD608828   .a 297 to 868 1 to 586   tiling clone,   586/586
(100 %)
27 diff
(95.4 %id)
CD608827   .a 339 to 1016 700 to 21   tiling clone,   680/700
(97 %)
5 diff
(99.3 %id)
BF827803 head_normal .a 1351 to 1453 7 to 107   tiling clone,   101/107
(94 %)
8 diff
(92.6 %id)
BF827802 head_normal .a 1424 to 1887 463 to 2   tiling clone, Submitted on the opposite strand 462/463
(99 %)
2 diff
(99.6 %id)
BF827281 head_normal .a 1451 to 1804 411 to 54     Submitted on the opposite strand 359/411
(87 %)
15 diff
(96.4 %id)
BI000687 head_normal .a 1453 to 1865 417 to 1       417/417
(100 %)
24 diff
(94.3 %id)
BF827789 head_normal .a 1473 to 1886 414 to 3   tiling clone, Submitted on the opposite strand 412/414
(99 %)
1 diff
(99.8 %id)
BF827450 head_normal .a 1484 to 1844 365 to 3     Submitted on the opposite strand 363/365
(99 %)
6 diff
(98.4 %id)
BI000785 head_normal .a 1532 to 1858 327 to 1   tiling clone,   327/327
(100 %)
3 diff
(99.1 %id)
BF827309 head_normal .a 1542 to 1895 404 to 50   tiling clone, Submitted on the opposite strand 355/404
(87 %)
10 diff
(97.6 %id)
AI651620 pooled germ cell tumors .a 3049 to 3359 311 to 1   tiling clone,   311/547
(56 %)
3 diff
(99.5 %id)
DA225489 brain .a 4515 to 5066 2 to 553   tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
DA767569 tongue .a 6000 to 6579 2 to 581   tiling clone, capped   580/580
(100 %)
0 diff
(100 %id)
TI_1210517526   .a 6720 to 7042 456 to 777   tiling clone,   322/777
(41 %)
16 diff
(98.0 %id)
AF075460   .a 7026 to 7385 1 to 360   tiling clone,   360/360
(100 %)
0 diff
(100 %id)
AA683248 schizophrenic brain S-11 frontal lobe .a 7428 to 7715 1 to 284   tiling clone, Submitted on the opposite strand 284/284
(100 %)
7 diff
(97.6 %id)
CD608823   .a 7539 to 8106 1 to 569   tiling clone,   569/569
(100 %)
4 diff
(99.3 %id)
CD608822   .a 8140 to 8635 18 to 514   tiling clone,   497/516
(96 %)
10 diff
(98.1 %id)
CD608824   .a 8164 to 8753 599 to 7   tiling clone,   597/599
(99 %)
63 diff
(89.5 %id)
CD608818   .a 8180 to 8908 1 to 719       723/719
(100 %)
21 diff
(97.1 %id)
CD608821   .a 8228 to 8635 426 to 15   tiling clone,   412/426
(96 %)
7 diff
(98.4 %id)
BQ355817 head_neck .a 8356 to 8711 363 to 7       357/381
(93 %)
8 diff
(98.0 %id)
CV361166 head_neck .a 8356 to 8590 261 to 31     Submitted on the opposite strand 231/263
(87 %)
9 diff
(96.6 %id)
BE764244 nervous_tumor .a 8550 to 8923 1 to 375       375/375
(100 %)
8 diff
(97.9 %id)
BE712837 head_neck .a 8561 to 8945 385 to 2       384/385
(99 %)
2 diff
(99.5 %id)
BE764184 nervous_tumor .a 8561 to 9092 1 to 532   tiling clone,   532/536
(99 %)
1 diff
(99.9 %id)
BE764229 nervous_tumor .a 8561 to 9035 1 to 475       475/475
(100 %)
7 diff
(98.6 %id)
BE764241 nervous_tumor .a 8561 to 8917 1 to 357       357/357
(100 %)
1 diff
(99.8 %id)
BE764295 nervous_tumor .a 8561 to 8947 1 to 388       386/410
(94 %)
6 diff
(98.6 %id)
BE764297 nervous_tumor .a 8561 to 8960 1 to 400       400/400
(100 %)
3 diff
(99.3 %id)
BE764324 nervous_tumor .a 8561 to 8924 1 to 364       364/364
(100 %)
2 diff
(99.5 %id)
BE764330 nervous_tumor .a 8561 to 8930 1 to 370       370/370
(100 %)
1 diff
(99.8 %id)
BF365902 nervous_tumor .a 8561 to 8930 1 to 370       370/370
(100 %)
7 diff
(98.2 %id)
BE712835 head_neck .a 8562 to 9149 11 to 598       588/600
(98 %)
19 diff
(96.9 %id)
CD608817   .a 8623 to 9365 761 to 24   tiling clone,   739/761
(97 %)
4 diff
(99.5 %id)
BE764336 nervous_tumor .a 8642 to 8876 235 to 1       235/270
(87 %)
1 diff
(99.7 %id)
BF353802 head_neck .a 8646 to 9131 520 to 28       493/604
(81 %)
5 diff
(99.2 %id)
BE764174 nervous_tumor .a 8670 to 9143 474 to 1       474/474
(100 %)
2 diff
(99.6 %id)
BE764181 nervous_tumor .a 8698 to 9143 446 to 1       446/446
(100 %)
3 diff
(99.4 %id)
BE764223 nervous_tumor .a 8704 to 9143 440 to 1       440/440
(100 %)
0 diff
(100 %id)
BE764204 nervous_tumor .a 8718 to 9143 426 to 1       426/426
(100 %)
2 diff
(99.6 %id)
BF365920 nervous_tumor .a 8745 to 9143 401 to 1       401/404
(99 %)
4 diff
(99.1 %id)
CD608819   .a 8745 to 9272 26 to 554       529/556
(95 %)
2 diff
(99.7 %id)
CD608820   .a 8745 to 9272 530 to 3   tiling clone,   528/556
(94 %)
0 diff
(100 %id)
BE764201 nervous_tumor .a 8860 to 9143 284 to 1       284/284
(100 %)
2 diff
(99.3 %id)
BG989571 head_neck .a 9098 to 9646 550 to 1   tiling clone,   550/550
(100 %)
22 diff
(96.0 %id)
BI549601 brain, hippocampus .a 9699 to 10417 1 to 718   tiling clone,   718/718
(100 %)
7 diff
(99.1 %id)
TI_44170807   .a 9701 to 10417 139 to 854       716/854
(83 %)
10 diff
(98.9 %id)
DB483231.
matches multiple genes
hippocampus .a 9705 to 10205 1 to 501   tiling clone, also hits gene sweecher 501/501
(100 %)
1 diff
(99.9 %id)
F01153 leg muscle, skeletal muscle .a 10040 to 10373 338 to 2   tiling clone,   337/338
(99 %)
8 diff
(97.7 %id)
CD608830   .a 11395 to 11901 1 to 508   tiling clone,   508/525
(96 %)
7 diff
(98.7 %id)
CD608829   .a 11399 to 11901 521 to 17   tiling clone,   505/525
(96 %)
5 diff
(99.1 %id)
CN308890 embryonic stem cells, cell lines H1, H7, andH9 .a 11919 to 12409 13 to 503   tiling clone,   491/503
(97 %)
6 diff
(98.9 %id)
AW984088 head_normal .a 12256 to 12594 343 to 4   tiling clone, Submitted on the opposite strand 340/343
(99 %)
1 diff
(99.8 %id)
AI382958 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 12801 to 13015 215 to 1   tiling clone,   215/215
(100 %)
2 diff
(99.1 %id)
DA256457 caudate nucleus .a 13564 to 14123 2 to 561   tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
CB129444 cervix, Uterine .a 13872 to 14298 1 to 427       427/427
(100 %)
0 diff
(100 %id)
BX283152 epithelioid carcinoma cell line, Pancreas .a 13923 to 14378 1 to 458       458/460
(99 %)
4 diff
(99.2 %id)
BG830167 epithelioid carcinoma cell line, Pancreas .a 13923 to 14533 1 to 611   tiling clone,   611/611
(100 %)
0 diff
(100 %id)
AW950824   .a 14030 to 14495 9 to 475       467/482
(96 %)
13 diff
(97.4 %id)
T09039   .a 14035 to 14423 1 to 388       388/390
(99 %)
4 diff
(99.0 %id)
TI_45133255   .a 14149 to 14966 44 to 863       820/867
(94 %)
20 diff
(97.7 %id)
TI_45133686   .a 14149 to 14763 45 to 657       613/657
(93 %)
14 diff
(97.9 %id)
BI457249 epithelioid carcinoma cell line, Pancreas .a 14160 to 14966 1 to 809       809/813
(99 %)
14 diff
(98.3 %id)
BI457578 epithelioid carcinoma cell line, Pancreas .a 14160 to 14763 1 to 602       602/602
(100 %)
4 diff
(99.4 %id)
BF868876 lung_tumor .a 14190 to 14470 1 to 281       281/281
(100 %)
1 diff
(99.7 %id)
BI000793 head_normal .a 14213 to 14555 346 to 6       341/360
(94 %)
1 diff
(99.8 %id)
BE175415 head_neck .a 14217 to 14901 22 to 705       684/705
(97 %)
9 diff
(98.8 %id)
F00747 leg muscle, skeletal muscle .a 14221 to 14554 1 to 337       337/339
(99 %)
9 diff
(97.4 %id)
BF036839 adenocarcinoma, ovary .a 14240 to 14968 1 to 731   tiling clone,   731/731
(100 %)
5 diff
(99.4 %id)
BE175369 head_neck .a 14366 to 14909 572 to 29     Submitted on the opposite strand 544/583
(93 %)
4 diff
(99.4 %id)
BE175416 head_neck .a 14366 to 14909 546 to 2     Submitted on the opposite strand 545/557
(97 %)
7 diff
(98.8 %id)
BP264832 muscle .a 14437 to 14902 1 to 465   tiling clone,   465/467
(99 %)
23 diff
(95.1 %id)
CD608825   .a 14579 to 14890 16 to 327       312/337
(92 %)
7 diff
(98.0 %id)
D54677   .a 14638 to 14986 1 to 348       348/348
(100 %)
4 diff
(98.9 %id)
BF088553 head_neck .a 14649 to 15141 18 to 511       494/515
(95 %)
15 diff
(97.1 %id)
CA307078 Alveolar Macrophage, lung .a 14736 to 15391 671 to 16   tiling clone, AAA   656/656
(100 %)
5 diff
(99.3 %id)
AA194415 muscle, skeletal muscle .a 14786 to 15150 1 to 368       368/428
(85 %)
7 diff
(98.4 %id)
BF349474 head_neck .a 14876 to 15187 1 to 312       312/312
(100 %)
5 diff
(98.4 %id)
BQ348175 head_neck .a 14876 to 15187 1 to 312       312/312
(100 %)
5 diff
(98.4 %id)
CD608826   .a 14915 to 15294 380 to 1       380/384
(98 %)
1 diff
(99.8 %id)
F20804 pectoral muscle (after mastectomy) .a 14959 to 15388 13 to 446       434/449
(96 %)
13 diff
(97.2 %id)
F32576 pectoral muscle (after mastectomy) .a 14964 to 15314 1 to 351       351/351
(100 %)
4 diff
(98.9 %id)
AA808825 Kidney, kidney tumor .a 14968 to 15366 1 to 399       399/399
(100 %)
0 diff
(100 %id)
AI364203 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 14972 to 15388 446 to 22   AAA   425/427
(99 %)
17 diff
(96.1 %id)
F34300 pectoral muscle (after mastectomy) .a 14975 to 15343 1 to 369       369/369
(100 %)
0 diff
(100 %id)
F00571 leg muscle, skeletal muscle .a 14980 to 15282 1 to 303       303/332
(91 %)
3 diff
(99.1 %id)
F31264 pectoral muscle (after mastectomy) .a 14985 to 15261 1 to 277       277/277
(100 %)
0 diff
(100 %id)
F36856 pectoral muscle (after mastectomy) .a 14985 to 15368 1 to 383       383/383
(100 %)
6 diff
(98.5 %id)
F32593 pectoral muscle (after mastectomy) .a 15004 to 15367 1 to 364       364/364
(100 %)
8 diff
(97.9 %id)
AA815407   .a 15019 to 15391 384 to 13   AAA   372/372
(100 %)
2 diff
(99.5 %id)
AJ574397 pectoral muscle (after mastectomy) .a 15026 to 15391 1 to 365       365/365
(100 %)
7 diff
(98.1 %id)
F33036 pectoral muscle (after mastectomy) .a 15032 to 15327 1 to 296       296/296
(100 %)
3 diff
(99.0 %id)
T17284   .a 15035 to 15388 352 to 1       352/361
(97 %)
6 diff
(98.4 %id)
BQ189108 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 15036 to 15388 1 to 353   tiling clone, fully sequenced, AAA   353/353
(100 %)
0 diff
(100 %id)
F21112 pectoral muscle (after mastectomy) .a 15056 to 15249 1 to 194       194/194
(100 %)
4 diff
(98.0 %id)
F00754 leg muscle, skeletal muscle .a 15079 to 15389 1 to 311       311/320
(97 %)
4 diff
(98.8 %id)
BQ185433 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 15122 to 15388 285 to 19   fully sequenced, AAA   267/267
(100 %)
0 diff
(100 %id)
F16167 pectoral muscle (after mastectomy) .a 15136 to 15390 1 to 255       255/256
(99 %)
10 diff
(96.1 %id)
F15827 pectoral muscle (after mastectomy) .a 15166 to 15392 1 to 227   tiling clone,   227/227
(100 %)
0 diff
(100 %id)
F21877 pectoral muscle (after mastectomy) .a 15182 to 15392 1 to 211       211/211
(100 %)
0 diff
(100 %id)
AA192172 muscle, skeletal muscle .a 15226 to 15387 162 to 1       162/162
(100 %)
4 diff
(97.6 %id)
F17910 pectoral muscle (after mastectomy) .a 15238 to 15390 1 to 153       153/154
(99 %)
4 diff
(97.5 %id)
NM_001042723.1   .b 1 to 15376 1 to 15376 exact RefSeq,   15376/15376
(100 %)
0 diff
(100 %id)
A20359   .b 24 to 15373 1 to 15345       15345/15345
(100 %)
23 diff
(99.9 %id)
J05200   .b 24 to 15374 1 to 15346   tiling clone,   15346/15346
(100 %)
22 diff
(99.9 %id)
BQ898378 dorsal root ganglia .b 10180 to 10829 126 to 781   tiling clone,   654/1094
(59 %)
11 diff
(99.0 %id)
AB209425 brain .c 1 to 6266 1 to 6266 exact tiling clone,   6266/6266
(100 %)
10 diff
(99.9 %id)
AK293785 cerebellum .d 1 to 2201 1 to 2201   tiling clone,   2201/2201
(100 %)
3 diff
(99.9 %id)
DC307147 cerebellum .d 1 to 564 1 to 564       564/564
(100 %)
1 diff
(99.9 %id)
BM805728 brain, hippocampus .d 2080 to 2594 1 to 515   tiling clone,   515/556
(92 %)
1 diff
(99.9 %id)
CR991017 T-Lymphocytes .e 1 to 863 1 to 864 N286K E287* tiling clone,   864/864
(100 %)
1 diff
(99.9 %id)
CX784892 human embryonic stem cells .f 1 to 843 1 to 842 exact tiling clone,   842/842
(100 %)
2 diff
(99.8 %id)
CX786866 human embryonic stem cells .f 50 to 830 1 to 781       781/781
(100 %)
0 diff
(100 %id)
BF923994 nervous_tumor .g 1 to 245 1 to 244   tiling clone,   244/244
(100 %)
4 diff
(98.4 %id)
BF919252 nervous_tumor .g 195 to 613 1 to 419   tiling clone,   419/419
(100 %)
3 diff
(99.3 %id)
BF769208 epid_tumor .h 1 to 521 37 to 555 T4N L5W V6W D7S R8V ... tiling clone,   519/555
(93 %)
9 diff
(98.4 %id)
BQ315220 epid_tumor .h 10 to 485 8 to 497   tiling clone,   490/497
(98 %)
13 diff
(97.4 %id)
CA427848 Bone, Subchondral Bone .i 1 to 657 675 to 19 exact tiling clone, AAA   657/669
(98 %)
2 diff
(99.8 %id)
AL110318 brain .j 1 to 432 1 to 432 E107* tiling clone,   432/432
(100 %)
1 diff
(99.8 %id)
DB060646 testis .k-u 1 to 582 2 to 583 exact tiling clone, capped   582/582
(100 %)
1 diff
(99.9 %id)
F34519 pectoral muscle (after mastectomy) .l-u 1 to 407 1 to 407 exact tiling clone,   407/407
(100 %)
0 diff
(100 %id)
F24310 pectoral muscle (after mastectomy) .l-u 40 to 371 1 to 332       332/332
(100 %)
1 diff
(99.7 %id)
AI660486 colon, colonic mucosa from 3 patients with Crohn'sdisease .m-u -11 to 307 322 to 5 P24S Q45P R47Q P48T M50N ... tiling clone,   318/322
(98 %)
0 diff
(100 %id)
BF913488 uterus_tumor Gene RYR1, variant not shown         Suspected internal deletion, this clone was ignored    
BI000686 head_normal Gene RYR1, variant not shown              
DB356132 whole embryo, mainly head Gene RYR1, variant not shown         This clone was ignored    
DA569490 whole embryo, mainly head Gene RYR1, variant not shown       capped This clone was ignored    
BQ962760 epithelioid carcinoma cell line, Pancreas Gene RYR1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k-u, .l-u, .m-u, .n-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI