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Gene RUSC1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
492 representative clones for gene RUSC1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001105203.1   .a 1 to 3484 2 to 3485 exact RefSeq, AAA   3485/3485
(100 %)
0 diff
(100 %id)
BC025680 Lung, Spleen, fetal, pooled .a 78 to 3478 1 to 3401 P36S tiling clone, available from MGC, AAA   3401/3401
(100 %)
1 diff
(100.0 %id)
AK055451 brain .a 740 to 3095 1 to 2356   available from FLJ,   2356/2356
(100 %)
0 diff
(100 %id)
BU855660 ovary, teratocarcinoma, cell line .a 1470 to 2291 1 to 833       833/920
(90 %)
18 diff
(98.1 %id)
BI911431 leukocyte .a 1580 to 2230 36 to 689       654/692
(94 %)
13 diff
(98.2 %id)
TI_57232270   .a 1580 to 2230 36 to 689       654/692
(94 %)
13 diff
(98.2 %id)
TI_57177473   .a 1582 to 2459 26 to 897       872/897
(97 %)
24 diff
(97.4 %id)
BX394128 Neuroblastoma Cot 25-normalized .a 1584 to 2517 1 to 933       931/936
(99 %)
33 diff
(96.5 %id)
BI766518 pooled lung and spleen .a 1589 to 2459 1 to 865       865/865
(100 %)
19 diff
(97.9 %id)
DN997380 breast cancer, Mammary gland (cancer tissue) .a 1592 to 2121 9 to 538       530/538
(98 %)
6 diff
(98.9 %id)
AW955374   .a 1613 to 2172 1 to 565       563/565
(99 %)
13 diff
(97.7 %id)
CV025755 mixed .a 1636 to 2309 1 to 669       669/671
(99 %)
8 diff
(98.9 %id)
TI_1948093654   .a 1636 to 2301 135 to 800   fully sequenced,   666/800
(83 %)
6 diff
(99.3 %id)
TI_1948093983   .a 1636 to 2301 133 to 799   fully sequenced,   667/799
(83 %)
6 diff
(99.3 %id)
TI_1948094151   .a 1636 to 2315 133 to 815   fully sequenced,   683/815
(83 %)
7 diff
(99.2 %id)
DB011930 esophageal, tumor tissue .a 1651 to 2199 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
AL080083 brain .a 1658 to 3478 1 to 1821   available from DKFZ, AAA   1821/1821
(100 %)
5 diff
(99.8 %id)
DA730834   .a 1727 to 2514 2 to 794   capped   793/801
(99 %)
8 diff
(99.1 %id)
BM747926 stomach .a 1802 to 2225 1 to 425       425/425
(100 %)
1 diff
(99.8 %id)
BM747656 stomach .a 1802 to 2326 1 to 526       526/526
(100 %)
1 diff
(99.9 %id)
BM783067 stomach .a 1802 to 2428 1 to 628       628/628
(100 %)
1 diff
(99.9 %id)
BM789725 stomach .a 1802 to 2429 1 to 627       627/627
(100 %)
3 diff
(99.6 %id)
BM739612 stomach .a 1803 to 2256 1 to 464       464/464
(100 %)
15 diff
(96.8 %id)
CR615259 Neuroblastoma Cot 25-normalized .a 1805 to 3074 1 to 1270       1270/1270
(100 %)
0 diff
(100 %id)
BX332230 Neuroblastoma Cot 25-normalized .a 1805 to 2443 1 to 638       638/638
(100 %)
1 diff
(99.9 %id)
BX385601 Neuroblastoma Cot 25-normalized .a 1805 to 2763 1 to 949       949/955
(99 %)
16 diff
(98.4 %id)
CR616457 Neuroblastoma Cot 25-normalized .a 1828 to 3455 1 to 1628       1628/1628
(100 %)
0 diff
(100 %id)
BX366444 Neuroblastoma Cot 25-normalized .a 1828 to 2643 1 to 816       816/935
(87 %)
3 diff
(99.7 %id)
BE255037 eye, retinoblastoma .a 1896 to 2545 1 to 648       648/720
(90 %)
18 diff
(97.5 %id)
AW881228 ovary .a 1918 to 2233 323 to 10       314/323
(97 %)
0 diff
(100 %id)
BE832849 ovary .a 1918 to 2226 1 to 308       308/308
(100 %)
2 diff
(99.4 %id)
R53360 whole brain .a 1930 to 2336 1 to 415       415/490
(84 %)
13 diff
(97.4 %id)
BG292322 bladder, transitional cell papilloma, cell line .a 1934 to 2584 1 to 651       651/894
(72 %)
5 diff
(99.5 %id)
BF360548 ovary .a 1948 to 2226 61 to 344       284/344
(82 %)
6 diff
(98.3 %id)
DA615723   .a 1973 to 2549 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
BQ227772 epithelioid carcinoma, Pancreas .a 2043 to 2891 1 to 855       853/862
(98 %)
11 diff
(98.8 %id)
AW675162 cervical carcinoma cell line, cervix .a 2046 to 2492 1 to 447       447/447
(100 %)
0 diff
(100 %id)
BM790495 Ascites, stomach .a 2052 to 2652 1 to 601       601/601
(100 %)
2 diff
(99.7 %id)
BM695809 eye, human retina .a 2063 to 2673 1 to 611   fully sequenced,   611/611
(100 %)
0 diff
(100 %id)
DA363355 subthalamic nucleus .a 2075 to 2626 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
CD625555   .a 2087 to 2400 1 to 315       315/334
(94 %)
12 diff
(96.5 %id)
TI_1948093814   .a 2087 to 2939 978 to 124       855/1311
(65 %)
8 diff
(99.4 %id)
CB851696 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 2087 to 2849 1 to 761     Submitted on the opposite strand 761/761
(100 %)
8 diff
(99.0 %id)
TI_149315742   .a 2089 to 3000 50 to 942     Submitted on the opposite strand 893/1095
(81 %)
29 diff
(97.4 %id)
BE904123 epithelioid carcinoma, Pancreas .a 2097 to 2871 1 to 766       766/924
(82 %)
23 diff
(97.6 %id)
BE175335 head_neck .a 2101 to 2214 1 to 116       116/127
(91 %)
8 diff
(93.8 %id)
CD625554   .a 2121 to 2400 294 to 20       275/294
(93 %)
14 diff
(95.3 %id)
BX364427 Neuroblastoma Cot 25-normalized .a 2123 to 3074 956 to 1       956/980
(97 %)
29 diff
(97.1 %id)
CR590186 Neuroblastoma Cot 50-normalized .a 2135 to 3447 1 to 1313       1313/1313
(100 %)
0 diff
(100 %id)
AL529226 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 2136 to 2799 1 to 664   fully sequenced,   664/664
(100 %)
7 diff
(99.0 %id)
EC564707 Prostate .a 2179 to 2282 1 to 104       104/104
(100 %)
0 diff
(100 %id)
CA455157   .a 2198 to 3072 1 to 879       879/887
(99 %)
9 diff
(99.0 %id)
CR996021 T-Lymphocytes .a 2226 to 3091 1 to 873       873/873
(100 %)
12 diff
(98.7 %id)
CN305637 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2239 to 2621 1 to 383       383/383
(100 %)
3 diff
(99.3 %id)
ES315240 occipital scalp hair, skin .a 2257 to 2374 1 to 116       116/116
(100 %)
6 diff
(94.9 %id)
BI753536 brain .a 2260 to 3010 1 to 752       752/752
(100 %)
5 diff
(99.4 %id)
TI_1948093655   .a 2271 to 2939 792 to 125   fully sequenced,   668/792
(84 %)
0 diff
(100 %id)
TI_1948093984   .a 2271 to 2939 789 to 124   fully sequenced,   666/789
(84 %)
0 diff
(100 %id)
TI_1948094152   .a 2285 to 2939 792 to 127   fully sequenced,   666/792
(84 %)
1 diff
(99.9 %id)
BG683380 brain, neuroblastoma, cell line .a 2301 to 3036 1 to 739   fully sequenced,   739/739
(100 %)
8 diff
(99.0 %id)
T09015   .a 2332 to 2733 1 to 409       409/411
(99 %)
9 diff
(97.9 %id)
TI_154115391   .a 2351 to 3152 877 to 89   AAA   789/939
(84 %)
16 diff
(98.3 %id)
BM012587 brain, neuroblastoma, cell line .a 2389 to 3167 1 to 778       778/778
(100 %)
3 diff
(99.7 %id)
TI_59381807   .a 2390 to 3167 101 to 877       777/777
(100 %)
2 diff
(99.8 %id)
R24145 placenta .a 2394 to 2769 1 to 381       381/385
(98 %)
12 diff
(96.9 %id)
CN305635 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2398 to 2983 1 to 586       586/586
(100 %)
0 diff
(100 %id)
BU736433 eye, human retina .a 2612 to 3097 502 to 17   fully sequenced, AAA   486/486
(100 %)
4 diff
(99.2 %id)
BX366443 Neuroblastoma Cot 25-normalized .a 2642 to 3455 814 to 1       814/1113
(73 %)
2 diff
(99.9 %id)
AW672994 cervical carcinoma cell line, cervix .a 2704 to 3098 397 to 3       395/397
(99 %)
1 diff
(99.8 %id)
AL529225 brain, neuroblastoma cells, Neuroblastoma Cot 50-normalized .a 2738 to 3444 711 to 5   fully sequenced,   707/711
(99 %)
0 diff
(100 %id)
BG683979 brain, neuroblastoma, cell line .a 3006 to 3424 426 to 1   fully sequenced,   426/426
(100 %)
13 diff
(97.0 %id)
BX350985 Neuroblastoma Cot 25-normalized .a 3055 to 3434 402 to 24       379/404
(93 %)
20 diff
(95.1 %id)
DB362811   .a 3056 to 3478 423 to 1       423/425
(99 %)
1 diff
(99.8 %id)
NM_001105204.1   .b 1 to 3166 2 to 3167 exact RefSeq, AAA   3167/3167
(100 %)
0 diff
(100 %id)
DA099897 cerebellum .b 1 to 538 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA411674 thalamus .b 1 to 564 2 to 565   tiling clone, capped   564/564
(100 %)
0 diff
(100 %id)
DA120873 cerebellum .b 6 to 528 2 to 525   capped   524/524
(100 %)
1 diff
(99.9 %id)
DA790797 brain .b 31 to 573 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DA811610 brain .b 45 to 613 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA110592 cerebellum .b 46 to 602 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA320002 hippocampus .b 46 to 514 2 to 472   capped   471/471
(100 %)
2 diff
(99.6 %id)
DA795603 brain .b 46 to 598 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA806512 brain .b 46 to 620 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
AK125378 brain .b 47 to 3160 1 to 3113 S149Q A150Q G151A P152L G153A ... tiling clone, available from FLJ,   3113/3113
(100 %)
1 diff
(100.0 %id)
DA225646 brain .b 48 to 611 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA500143 brain .b 48 to 605 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA507769 brain .b 48 to 627 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA773541 brain .b 48 to 619 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DB278554 uterus .b 48 to 605 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA106228 cerebellum .b 51 to 611 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA212784 brain .b 51 to 522 2 to 473   capped   472/472
(100 %)
0 diff
(100 %id)
DA229146 brain .b 51 to 618 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA249603 brain .b 51 to 634 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA249606 brain .b 51 to 623 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA337378 hippocampus .b 51 to 635 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA370331 thalamus .b 51 to 599 2 to 550   capped   549/549
(100 %)
4 diff
(99.3 %id)
DA386706 thalamus .b 51 to 565 2 to 516   capped   515/515
(100 %)
1 diff
(99.9 %id)
DB289644 uterus .b 51 to 605 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA498713 brain .b 57 to 633 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
DA115929 cerebellum .b 68 to 623 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA474657   .b 70 to 626 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB275729 uterus .b 71 to 565 2 to 496   capped   495/495
(100 %)
2 diff
(99.6 %id)
DA110034 cerebellum .b 73 to 619 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA128627 cerebellum .b 73 to 657 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA183855 amygdala .b 73 to 629 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA186707 amygdala .b 73 to 627 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA193632 amygdala .b 73 to 660 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA193898 amygdala .b 73 to 644 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA247638 brain .b 73 to 550 2 to 479   capped   478/478
(100 %)
2 diff
(99.6 %id)
DA249967 brain .b 73 to 649 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA314494 hippocampus .b 73 to 630 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA334487 hippocampus .b 73 to 646 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA336730 hippocampus .b 73 to 663 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
DA337361 hippocampus .b 73 to 646 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA338425 hippocampus .b 73 to 664 2 to 593   capped   592/593
(99 %)
1 diff
(99.9 %id)
DA340503 hippocampus .b 73 to 655 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA393429 thalamus .b 73 to 659 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA405951 thalamus .b 73 to 719 2 to 648   capped   647/647
(100 %)
0 diff
(100 %id)
DA418314 thalamus .b 73 to 630 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA722958   .b 73 to 630 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA776782 brain .b 73 to 657 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA783212 brain .b 73 to 605 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DA808079 brain .b 73 to 605 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
DB073805 testis .b 73 to 615 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DB163472 thymus .b 73 to 634 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB286222 uterus .b 73 to 429 2 to 358   capped   357/357
(100 %)
0 diff
(100 %id)
DB288473 uterus .b 73 to 605 2 to 534   capped   533/533
(100 %)
0 diff
(100 %id)
BI769806 pooled lung and spleen .b 78 to 835 1 to 761   available from MGC,   761/762
(99 %)
20 diff
(97.4 %id)
TI_57179505   .b 78 to 835 29 to 789       761/790
(96 %)
25 diff
(96.9 %id)
DB478234 hippocampus .b 79 to 565 1 to 487       487/489
(99 %)
2 diff
(99.6 %id)
TI_45215801   .b 89 to 854 84 to 851       768/852
(90 %)
19 diff
(97.8 %id)
TI_44345170   .b 89 to 850 80 to 847       768/848
(90 %)
21 diff
(97.6 %id)
TI_44345217   .b 89 to 853 87 to 854       768/854
(89 %)
9 diff
(99.0 %id)
DA400938 thalamus .b 90 to 657 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
BI603048 brain, hypothalamus .b 90 to 854 1 to 767       767/768
(99 %)
16 diff
(98.0 %id)
BI669642 brain, hypothalamus .b 90 to 850 1 to 767       767/768
(99 %)
18 diff
(97.7 %id)
BI669912 brain, hypothalamus .b 90 to 853 1 to 767       767/767
(100 %)
6 diff
(99.3 %id)
DA401993 thalamus .b 94 to 651 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA418718 thalamus .b 94 to 661 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
BX445057 brain, fetal brain .b 96 to 494 17 to 416       400/416
(96 %)
6 diff
(98.6 %id)
BX461452 brain, fetal brain .b 96 to 1086 17 to 1008       992/1008
(98 %)
10 diff
(99.1 %id)
CB992866 placenta, pre-eclamptic placenta .b 97 to 855 27 to 794       768/898
(85 %)
19 diff
(97.9 %id)
DA404116 thalamus .b 99 to 650 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
BI546827 brain, hippocampus .b 103 to 911 1 to 812       812/813
(99 %)
17 diff
(98.0 %id)
DA786840 brain .b 105 to 679 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DB473437 hippocampus .b 108 to 603 1 to 498       498/498
(100 %)
3 diff
(99.4 %id)
TI_44167252   .b 108 to 911 86 to 892       807/893
(90 %)
19 diff
(97.9 %id)
DA099502 cerebellum .b 109 to 665 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA186078 amygdala .b 109 to 645 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA411444 thalamus .b 109 to 605 2 to 498   capped   497/497
(100 %)
0 diff
(100 %id)
DB288245 uterus .b 109 to 661 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA386287 thalamus .b 203 to 787 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA099416 cerebellum .b 250 to 799 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA526379 brain .b 251 to 812 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA407790 thalamus .b 470 to 1001 2 to 533   tiling clone, capped   532/532
(100 %)
0 diff
(100 %id)
DA516625 brain .b 741 to 1282 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
BX432072 adult brain, brain .b 924 to 1682 1 to 757       757/760
(99 %)
34 diff
(95.6 %id)
DA503140 brain .b 995 to 1562 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DA089140 cerebellum .b 1066 to 1529 2 to 465   capped   464/464
(100 %)
2 diff
(99.6 %id)
CN295170 embryonic stem cells, cell lines H1, H7, andH9 .b 1079 to 1480 24 to 425       402/425
(94 %)
6 diff
(98.6 %id)
BM721041 eye, fetal eye .b 1106 to 1408 1 to 305       305/305
(100 %)
2 diff
(99.4 %id)
DA718216   .b 1127 to 1649 2 to 524   capped   523/523
(100 %)
0 diff
(100 %id)
DB172609 kidney, tumor tissue .b 1139 to 1617 2 to 480   capped   479/479
(100 %)
1 diff
(99.8 %id)
BI918370 brain .b 1427 to 2120 1 to 692       691/692
(99 %)
18 diff
(97.4 %id)
TI_57243141   .b 1428 to 2120 76 to 766       690/766
(90 %)
16 diff
(98.0 %id)
DA746848   .b 1487 to 2054 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
CN305631 embryonic stem cells, DMSO-treated H9 cellline .b 1510 to 1888 1 to 379       379/379
(100 %)
0 diff
(100 %id)
TI_57198666   .b 1586 to 2451 25 to 883       859/884
(97 %)
30 diff
(96.7 %id)
BI821805 pooled brain, lung, testis .b 1595 to 2451 1 to 851       851/852
(99 %)
25 diff
(97.1 %id)
T31282 brain .b 1612 to 1805 1 to 194       194/194
(100 %)
0 diff
(100 %id)
AL036511 brain .b 1658 to 2088 1 to 433       431/450
(95 %)
4 diff
(99.2 %id)
AA227833 brain, neuroepithelial cells .b 1791 to 2050 1 to 256       256/256
(100 %)
4 diff
(98.5 %id)
BE707890 head_neck .b 1922 to 2090 328 to 160       169/328
(51 %)
0 diff
(100 %id)
BX402178 Neuroblastoma Cot 25-normalized .b 2054 to 3130 1075 to 1       1075/1075
(100 %)
6 diff
(99.5 %id)
F11705 brain, total brain .b 2086 to 2439 1 to 354       354/354
(100 %)
1 diff
(99.8 %id)
AL565011 adult brain, brain .b 2091 to 3040 984 to 42       943/984
(95 %)
26 diff
(97.4 %id)
BX418220 brain, fetal brain .b 2137 to 3133 980 to 1       980/985
(99 %)
17 diff
(98.3 %id)
BI760453 pooled colon, kidney, stomach .b 2144 to 2576 1 to 439       439/439
(100 %)
5 diff
(98.9 %id)
BE181806 head_neck .b 2145 to 2457 324 to 11     Submitted on the opposite strand 318/324
(98 %)
1 diff
(99.7 %id)
CA449132 Chondrosarcoma, Left Pubic Bone .b 2149 to 2834 704 to 19   AAA   686/689
(99 %)
0 diff
(100 %id)
BE181761 head_neck .b 2158 to 2399 255 to 14     Submitted on the opposite strand 242/262
(92 %)
0 diff
(100 %id)
BE870654 adenocarcinoma, colon .b 2171 to 2974 1 to 800       800/806
(99 %)
20 diff
(97.6 %id)
AJ708546 heart .b 2191 to 2726 1 to 535       535/535
(100 %)
4 diff
(99.3 %id)
BM723738 eye, fetal eye .b 2199 to 2908 1 to 707       707/707
(100 %)
5 diff
(99.3 %id)
CD674034 eye, lens .b 2206 to 2729 1 to 524   fully sequenced,   524/524
(100 %)
0 diff
(100 %id)
AA122417 colon, tumor .b 2212 to 2598 1 to 388       388/393
(98 %)
6 diff
(98.5 %id)
BM692140 eye, human retina .b 2212 to 2481 1 to 270   fully sequenced,   270/270
(100 %)
6 diff
(97.8 %id)
DB316884 brain .b 2220 to 2777 559 to 1       559/559
(100 %)
1 diff
(99.9 %id)
BX418221 brain, fetal brain .b 2223 to 3137 908 to 1       908/908
(100 %)
16 diff
(98.3 %id)
BE539175 cervix .b 2234 to 2954 1 to 705       705/709
(99 %)
37 diff
(94.8 %id)
CB240953 Human Lung Epithelial cells, lung .b 2245 to 2777 551 to 19   AAA   533/542
(98 %)
0 diff
(100 %id)
BF525505 brain, glioblastoma with EGFR amplification .b 2271 to 3026 1 to 754       754/839
(89 %)
10 diff
(98.9 %id)
BY798872 eye .b 2277 to 2793 1 to 517       517/517
(100 %)
0 diff
(100 %id)
BU928489 brain, glioblastoma .b 2282 to 3037 1 to 767       767/772
(99 %)
20 diff
(97.5 %id)
BF760727 colon .b 2283 to 2685 432 to 42     Submitted on the opposite strand 391/434
(90 %)
4 diff
(99.1 %id)
TI_154131722   .b 2292 to 3160 953 to 91   AAA   863/1014
(85 %)
14 diff
(98.7 %id)
CB158302 Liver .b 2301 to 2617 1 to 317       317/317
(100 %)
0 diff
(100 %id)
H93203 liver and spleen .b 2304 to 2524 1 to 224   fully sequenced,   224/224
(100 %)
0 diff
(100 %id)
AA420796   .b 2311 to 2694 403 to 21       383/403
(95 %)
0 diff
(100 %id)
BM793813 Ascites, stomach .b 2318 to 2837 1 to 519       519/519
(100 %)
2 diff
(99.7 %id)
CD625556   .b 2331 to 2804 1 to 474       474/474
(100 %)
0 diff
(100 %id)
CD625557   .b 2331 to 2804 474 to 1       474/474
(100 %)
0 diff
(100 %id)
BF948682 nervous_normal .b 2336 to 2638 1 to 306       306/306
(100 %)
5 diff
(98.4 %id)
BM688630 eye, eye anterior segment .b 2336 to 2617 9 to 290       282/290
(97 %)
6 diff
(98.0 %id)
TI_149303456   .b 2340 to 3160 884 to 76   AAA   809/944
(85 %)
16 diff
(98.4 %id)
AW370368 breast .b 2363 to 3059 1 to 694       694/713
(97 %)
9 diff
(98.8 %id)
AI371852 pooled germ cell tumors .b 2370 to 2779 410 to 1       410/410
(100 %)
0 diff
(100 %id)
BI224439 cervical carcinoma cell line, cervix .b 2373 to 3160 1 to 792       792/805
(98 %)
11 diff
(98.7 %id)
TI_159723449   .b 2375 to 3166 882 to 96   tiling clone, AAA   787/983
(80 %)
8 diff
(99.2 %id)
CR743625   .b 2379 to 2779 415 to 15   AAA   401/401
(100 %)
0 diff
(100 %id)
BE896108 melanotic melanoma, skin .b 2385 to 3117 1 to 732       732/737
(99 %)
22 diff
(97.1 %id)
CX781742 human embryonic stem cells .b 2391 to 3162 1 to 772       772/778
(99 %)
1 diff
(99.9 %id)
AI761383 colon, colon tumor, RER+ .b 2395 to 2778 386 to 2       385/386
(99 %)
0 diff
(100 %id)
AW296548   .b 2401 to 2826 429 to 4       426/429
(99 %)
0 diff
(100 %id)
AW453008   .b 2404 to 2778 391 to 17       375/391
(95 %)
0 diff
(100 %id)
BQ014608 Chondrosarcoma, Left Pubic Bone .b 2404 to 3160 773 to 19   AAA   755/755
(100 %)
3 diff
(99.7 %id)
BM981469 lung, Primary Lung Cystic Fibrosis EpithelialCells .b 2419 to 3160 758 to 19   AAA   740/743
(99 %)
2 diff
(99.8 %id)
BU728544 eye, human retina .b 2420 to 2777 376 to 19   fully sequenced, AAA   358/358
(100 %)
0 diff
(100 %id)
CA418193 Bone, Human Chondrosarcoma Cell Line .b 2422 to 3160 757 to 19   AAA   739/739
(100 %)
1 diff
(99.9 %id)
BM700781 eye, human retina .b 2425 to 2889 9 to 473   fully sequenced,   465/473
(98 %)
6 diff
(98.8 %id)
D51113   .b 2433 to 2787 353 to 1       353/353
(100 %)
4 diff
(98.9 %id)
AA666060   .b 2446 to 2621 176 to 1       176/176
(100 %)
0 diff
(100 %id)
BM679478 eye, fetal eye .b 2490 to 3160 689 to 19   AAA   671/671
(100 %)
0 diff
(100 %id)
N28275 liver and spleen .b 2494 to 2820 329 to 1   fully sequenced,   329/329
(100 %)
4 diff
(98.8 %id)
DB325859 brain .b 2620 to 3160 541 to 1       541/541
(100 %)
0 diff
(100 %id)
CD674033 eye, lens .b 2699 to 3162 493 to 30   fully sequenced, AAA   464/464
(100 %)
12 diff
(97.5 %id)
AA121075 colon, tumor .b 2762 to 3160 432 to 34   AAA   399/399
(100 %)
0 diff
(100 %id)
BU727151 eye, eye anterior segment .b 2821 to 3160 358 to 19   AAA   340/340
(100 %)
2 diff
(99.5 %id)
BM672159 eye, human retina .b 2859 to 3160 320 to 19   fully sequenced, AAA   302/302
(100 %)
0 diff
(100 %id)
F09363 brain, total brain .b 2867 to 3160 294 to 1       294/294
(100 %)
0 diff
(100 %id)
BG330417 large cell carcinoma, lung .c 1 to 795 1 to 795   available from MGC,   795/884
(89 %)
28 diff
(96.9 %id)
BG331535 large cell carcinoma, lung .c 2 to 711 1 to 710   tiling clone,   708/871
(81 %)
20 diff
(97.8 %id)
BC052277 Lung, large cell carcinoma .c 3 to 2122 1 to 2120 exact tiling clone, available from MGC, AAA   2120/2120
(100 %)
1 diff
(100.0 %id)
NM_001105205.1   .c 3 to 2509 1 to 2507 exact RefSeq, AAA   2507/2507
(100 %)
1 diff
(100.0 %id)
BQ957619 large cell carcinoma, lung .c 4 to 796 1 to 794       794/919
(86 %)
11 diff
(98.9 %id)
BQ941360 large cell carcinoma, lung .c 4 to 785 1 to 788       788/946
(83 %)
11 diff
(98.9 %id)
BQ917497 large cell carcinoma, lung .c 4 to 919 1 to 929       929/929
(100 %)
24 diff
(97.5 %id)
DA914075   .c 365 to 931 2 to 569   capped   568/568
(100 %)
4 diff
(99.3 %id)
BQ962388 epithelioid carcinoma cell line, Pancreas .c 468 to 1217 1 to 754       754/918
(82 %)
8 diff
(99.2 %id)
DB187671 liver, tumor tissue .c 515 to 1067 2 to 555   capped   554/561
(98 %)
3 diff
(99.5 %id)
BC001045 Placenta, choriocarcinoma .c 519 to 2503 1 to 1985   tiling clone, available from MGC, AAA   1985/1985
(100 %)
1 diff
(100.0 %id)
BE278879 choriocarcinoma, placenta .c 536 to 1246 1 to 719   available from MGC,   719/728
(98 %)
36 diff
(95.1 %id)
BP297915   .c 578 to 1145 1 to 568       568/568
(100 %)
0 diff
(100 %id)
BP374563 umbilical cord .c 579 to 1158 1 to 580       580/582
(99 %)
2 diff
(99.7 %id)
DB247101   .c 580 to 1089 2 to 511   capped   510/510
(100 %)
0 diff
(100 %id)
CB994593 placenta, pre-eclamptic placenta .c 581 to 1280 24 to 729       706/902
(78 %)
17 diff
(98.2 %id)
CB997770 placenta, pre-eclamptic placenta .c 581 to 1330 24 to 778       755/778
(97 %)
13 diff
(98.4 %id)
TI_57216216   .c 584 to 1484 33 to 936       904/1013
(89 %)
30 diff
(97.1 %id)
BJ996864 hepatoblastoma .c 585 to 1011 1 to 427       427/427
(100 %)
0 diff
(100 %id)
BI758086 brain .c 585 to 1484 1 to 903       903/980
(92 %)
25 diff
(97.5 %id)
BM809774 astrocytoma grade IV, cell line, brain .c 585 to 1341 26 to 792       767/1232
(62 %)
32 diff
(97.5 %id)
DA007392   .c 586 to 1061 2 to 477   capped   476/476
(100 %)
1 diff
(99.8 %id)
DA202823 brain .c 586 to 1123 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA372062 thalamus .c 586 to 1133 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA378738 thalamus .c 586 to 1146 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
DN601743 human embryonic stem cells .c 596 to 1362 1 to 767       767/767
(100 %)
0 diff
(100 %id)
CR977039 T-Lymphocytes .c 596 to 1213 1 to 617       617/617
(100 %)
1 diff
(99.9 %id)
BM923127 leukocyte .c 598 to 1621 14 to 1045       1032/1054
(97 %)
22 diff
(98.0 %id)
DB016279 esophageal, tumor tissue .d 1 to 552 2 to 553   tiling clone, capped   552/552
(100 %)
0 diff
(100 %id)
BX363439   .d 15 to 948 1 to 935   tiling clone,   935/935
(100 %)
5 diff
(99.5 %id)
BX374230   .d 1490 to 1988 501 to 1   tiling clone,   501/593
(84 %)
25 diff
(95.8 %id)
BI767571 pooled lung and spleen .e 1 to 834 1 to 824   tiling clone,   824/824
(100 %)
34 diff
(95.9 %id)
TI_57184306   .e 1 to 834 29 to 852       824/852
(96 %)
6 diff
(99.3 %id)
DB235296 trachea .e 203 to 780 2 to 580   tiling clone, capped   579/579
(100 %)
3 diff
(99.5 %id)
CN305634 embryonic stem cells, DMSO-treated H9 cellline .e 334 to 1044 1 to 711       711/711
(100 %)
2 diff
(99.8 %id)
DC340569 thalamus .e 509 to 880 1 to 372       372/372
(100 %)
1 diff
(99.8 %id)
BX640612 uterus endothel, primary cell culture .e 516 to 2676 1 to 2161 exact tiling clone, available from DKFZ, AAA   2161/2161
(100 %)
1 diff
(100.0 %id)
DA879480 Prostate .e 526 to 1092 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DB005040 breast, tumor tissue .e 594 to 1134 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DA874926 Prostate .e 606 to 1166 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA284143 corpus callosum .f 1 to 314 158 to 471   tiling clone, capped   314/470
(66 %)
7 diff
(98.6 %id)
DA277224 corpus callosum .f 9 to 521 2 to 512   capped   511/511
(100 %)
2 diff
(99.7 %id)
DA375550 thalamus .f 11 to 577 2 to 568   tiling clone, capped   567/568
(99 %)
1 diff
(99.9 %id)
DB028070 testis .f 35 to 559 2 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
BP347637 brain .f 40 to 626 1 to 587       587/589
(99 %)
3 diff
(99.5 %id)
BJ991047 hepatoblastoma .f 42 to 626 1 to 585       585/586
(99 %)
2 diff
(99.7 %id)
BX384895   .f 72 to 1191 1 to 1100   fully sequenced,   1100/1100
(100 %)
34 diff
(97.0 %id)
BM547311 ovary (pool of 3) .f 76 to 736 1 to 661       661/1141
(57 %)
3 diff
(99.8 %id)
DB004342 breast, tumor tissue .f 194 to 731 2 to 538   capped   537/537
(100 %)
6 diff
(98.9 %id)
CR603309 HeLa cells Cot 25-normalized .f 270 to 2133 1 to 1864 exact tiling clone,   1864/1864
(100 %)
0 diff
(100 %id)
BX384894   .f 1137 to 2109 981 to 1   fully sequenced,   981/981
(100 %)
50 diff
(95.0 %id)
BJ991048 hepatoblastoma .f 1634 to 2113 480 to 1       480/480
(100 %)
0 diff
(100 %id)
NM_014328.3   .g 1 to 2059 2 to 2060 exact RefSeq, AAA   2060/2060
(100 %)
1 diff
(100.0 %id)
DA131200 alzheimer cortex .g 1 to 557 2 to 558   tiling clone, capped   557/557
(100 %)
2 diff
(99.7 %id)
BP378405 uterus .g 53 to 606 1 to 554       554/555
(99 %)
3 diff
(99.5 %id)
DA385170 thalamus .g 59 to 590 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DB104697 thymus .g 59 to 610 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
CN305636 embryonic stem cells, cell lines H1, H7, andH9 .g 75 to 442 1 to 369       369/369
(100 %)
4 diff
(99.0 %id)
BG825779 muscle, rhabdomyosarcoma .g 76 to 752 1 to 676       676/676
(100 %)
3 diff
(99.6 %id)
DB127299 thymus .g 80 to 633 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA954854 Spleen .g 81 to 648 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DB049026 testis .g 81 to 646 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DB247003   .g 81 to 634 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
CR594338 HeLa cells Cot 25-normalized .g 83 to 1640 1 to 1558 exact     1558/1558
(100 %)
0 diff
(100 %id)
AL555093 placenta .g 83 to 648 1 to 565   fully sequenced,   565/565
(100 %)
4 diff
(99.3 %id)
T09059   .g 85 to 447 1 to 364       364/369
(98 %)
2 diff
(99.5 %id)
AB026894   .g 86 to 2053 1 to 1968 V70L P301T G324A A326P tiling clone, AAA   1968/1968
(100 %)
4 diff
(99.8 %id)
AK074982   .g 91 to 2053 1 to 1962 exact available from FLJ,   1962/1962
(100 %)
2 diff
(99.9 %id)
DA891978 rectum .g 91 to 641 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
BF035194 adenocarcinoma, ovary .g 92 to 807 1 to 709       709/769
(92 %)
18 diff
(97.7 %id)
DA736708   .g 92 to 873 2 to 789   capped   788/875
(90 %)
16 diff
(98.2 %id)
BU167566 eye, retinoblastoma .g 93 to 1018 1 to 952       952/958
(99 %)
53 diff
(94.5 %id)
DA745759   .g 93 to 655 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA813804   .g 93 to 583 2 to 492   capped   491/491
(100 %)
2 diff
(99.6 %id)
CR603792 Placenta Cot 25-normalized .g 96 to 2014 1 to 1919 exact tiling clone,   1919/1919
(100 %)
0 diff
(100 %id)
BX324673 Placenta Cot 25-normalized .g 96 to 978 1 to 881       881/1063
(82 %)
8 diff
(99.3 %id)
BI159782 epithelioid carcinoma cell line, Pancreas .g 96 to 806 1 to 716       716/718
(99 %)
14 diff
(98.1 %id)
CD245673 White Matter .g 100 to 585 17 to 502       486/1033
(47 %)
20 diff
(98.1 %id)
DA600467   .g 110 to 673 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
CA397403 eye, RPE/choroid .g 112 to 603 1 to 492       492/492
(100 %)
0 diff
(100 %id)
BX379293 Placenta Cot 25-normalized .g 113 to 1036 1 to 919       919/919
(100 %)
7 diff
(99.3 %id)
BU509121 leiomyosarcoma, uterus .g 124 to 902 1 to 781       781/915
(85 %)
4 diff
(99.6 %id)
BM772922 Ascites, stomach .g 130 to 635 1 to 506       506/506
(100 %)
0 diff
(100 %id)
BM737890 Ascites, stomach .g 149 to 691 1 to 542       541/542
(99 %)
0 diff
(100 %id)
BX332279 Neuroblastoma Cot 25-normalized .g 159 to 1118 1 to 939       939/970
(96 %)
26 diff
(97.4 %id)
AL577688 placenta .g 611 to 1640 1021 to 1   fully sequenced,   1021/1021
(100 %)
41 diff
(96.0 %id)
BX387636 Placenta Cot 25-normalized .g 1009 to 2014 993 to 1       993/1037
(95 %)
24 diff
(97.7 %id)
BX379292 Placenta Cot 25-normalized .g 1037 to 1991 954 to 1       954/954
(100 %)
9 diff
(99.1 %id)
BX329568 Neuroblastoma Cot 25-normalized .g 1637 to 2034 394 to 2       393/482
(81 %)
0 diff
(100 %id)
BP351982   .h 1 to 581 2 to 582   tiling clone,   582/582
(100 %)
0 diff
(100 %id)
AK314559   .h 6 to 1677 1 to 1672   tiling clone,   1672/1672
(100 %)
2 diff
(99.9 %id)
DA579365   .h 7 to 549 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA846616 placenta .h 9 to 572 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DR761417 embryonic stem .h 246 to 962 1 to 717       717/717
(100 %)
0 diff
(100 %id)
BX401382   .h 321 to 1254 1 to 933   fully sequenced,   933/933
(100 %)
1 diff
(99.9 %id)
BX384689   .h 1224 to 2184 961 to 1   fully sequenced,   961/961
(100 %)
3 diff
(99.7 %id)
BM703500 eye, human retina .h 1516 to 1941 1 to 426   fully sequenced,   426/426
(100 %)
0 diff
(100 %id)
FN135164 breast carcinoma .h 1518 to 1572 55 to 1     Submitted on the opposite strand 55/55
(100 %)
0 diff
(100 %id)
TI_154032774   .h 1539 to 2224 725 to 39   AAA   687/974
(70 %)
1 diff
(99.9 %id)
CA443110 lung, Metastatic Chondrosarcoma .h 1539 to 2224 705 to 19   AAA   687/703
(97 %)
1 diff
(99.9 %id)
TI_57200649   .h 1546 to 2218 59 to 731   AAA   673/731
(92 %)
5 diff
(99.4 %id)
BQ775428 Bone, Human Chondrosarcoma Cell Line .h 1549 to 2218 688 to 19   AAA   670/670
(100 %)
0 diff
(100 %id)
BQ004124 Chondrosarcoma, Left Pelvis .h 1550 to 2224 694 to 19   AAA   676/676
(100 %)
1 diff
(99.9 %id)
CB242736 Human Lung Epithelial cells, lung .h 1553 to 2224 690 to 19   tiling clone, AAA   672/672
(100 %)
0 diff
(100 %id)
BI821497 pooled brain, lung, testis .h 1554 to 2218 1 to 665   AAA   665/665
(100 %)
0 diff
(100 %id)
BC131492 PCR rescued clones .h 1587 to 2179 598 to 6     Submitted on the opposite strand 593/607
(97 %)
0 diff
(100 %id)
BI770166 pooled lung and spleen .h 1594 to 2214 1 to 621       621/621
(100 %)
0 diff
(100 %id)
TI_57178229   .h 1594 to 2214 29 to 649       621/649
(95 %)
6 diff
(99.1 %id)
BF758007 colon .h 1620 to 2081 467 to 7     Submitted on the opposite strand 461/467
(98 %)
0 diff
(100 %id)
BQ309140 breast .h 1633 to 2086 470 to 17       454/481
(94 %)
0 diff
(100 %id)
AA405926 ovarian tumor, ovary .h 1643 to 1943 1 to 300       300/300
(100 %)
1 diff
(99.7 %id)
BF333615 colon_normal .h 1653 to 1831 194 to 13       182/194
(93 %)
0 diff
(100 %id)
T30425 colon, endothelial .h 1688 to 1959 1 to 272       272/272
(100 %)
2 diff
(99.3 %id)
BE939724 uterus_tumor .h 1697 to 1940 252 to 4       249/278
(89 %)
0 diff
(100 %id)
AW137077   .h 1697 to 2218 539 to 18   AAA   522/522
(100 %)
0 diff
(100 %id)
EC441385 Prostate .h 1703 to 1804 113 to 13       101/113
(89 %)
0 diff
(100 %id)
EC442983 Prostate .h 1703 to 1811 109 to 1       109/109
(100 %)
2 diff
(98.2 %id)
EC478217 Prostate .h 1703 to 1812 107 to 1       107/107
(100 %)
2 diff
(98.2 %id)
EC530942 Prostate .h 1703 to 1812 109 to 1       109/109
(100 %)
1 diff
(99.1 %id)
EC564501 Prostate .h 1703 to 1812 107 to 1       107/107
(100 %)
2 diff
(98.2 %id)
CR620448 T cells (Jurkat cell line) Cot10-normalized .h 1709 to 2220 1 to 512       512/512
(100 %)
0 diff
(100 %id)
BX383469   .h 1709 to 2220 1 to 512       512/512
(100 %)
4 diff
(99.3 %id)
EC572129 Prostate .h 1710 to 1811 96 to 1       96/96
(100 %)
5 diff
(94.8 %id)
AW516552 cervix, tumor .h 1740 to 2217 478 to 1       478/478
(100 %)
0 diff
(100 %id)
DB546880 hippocampus .h 1750 to 2218 1 to 468     Submitted on the opposite strand 468/468
(100 %)
2 diff
(99.6 %id)
AI601240 colon .h 1757 to 2220 465 to 2       464/465
(99 %)
0 diff
(100 %id)
DB542213 hippocampus .h 1758 to 2218 1 to 460   AAA Submitted on the opposite strand 460/460
(100 %)
6 diff
(98.7 %id)
AI803696 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h 1758 to 2220 464 to 2       463/464
(99 %)
0 diff
(100 %id)
AI168184 pooled .h 1768 to 2220 453 to 1       453/453
(100 %)
0 diff
(100 %id)
BF433270 carcinoid, lung .h 1769 to 2220 453 to 2       452/453
(99 %)
0 diff
(100 %id)
AA527028 Ewing's sarcoma .h 1775 to 2218 462 to 19   AAA   444/450
(98 %)
3 diff
(99.4 %id)
AI334348 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h 1777 to 2220 446 to 3       444/446
(99 %)
0 diff
(100 %id)
DB526844 testis .h 1786 to 2218 1 to 435   AAA Submitted on the opposite strand 435/435
(100 %)
10 diff
(97.8 %id)
BF939070 carcinoid, lung .h 1803 to 2220 421 to 4       418/421
(99 %)
0 diff
(100 %id)
AA555003 normal prostatic epithelial cells, Prostate .h 1811 to 2220 410 to 1       410/410
(100 %)
56 diff
(86.4 %id)
EC539071 Prostate .h 1816 to 1947 1 to 130       130/130
(100 %)
2 diff
(98.5 %id)
AA603723 germ cell tumor .h 1816 to 2218 426 to 24   AAA   403/403
(100 %)
0 diff
(100 %id)
AI268286 carcinoid, lung .h 1825 to 2217 393 to 1       393/393
(100 %)
0 diff
(100 %id)
AI432655 Kidney .h 1832 to 2218 476 to 90   AAA   387/387
(100 %)
1 diff
(99.8 %id)
BF082602 breast .h 1839 to 2212 1 to 373       373/373
(100 %)
3 diff
(99.2 %id)
AW300705 colon, moderately differentiated adenocarcinoma .h 1843 to 2218 386 to 11   AAA   376/376
(100 %)
2 diff
(99.5 %id)
EC451087 Prostate .h 1846 to 1967 1 to 121       121/121
(100 %)
1 diff
(99.2 %id)
AA826633 colon, colon tumor .h 1850 to 2189 340 to 1       340/340
(100 %)
1 diff
(99.8 %id)
BE826089 lung_normal .h 1858 to 2088 339 to 109       231/339
(68 %)
0 diff
(100 %id)
BQ343232 nervous_normal .h 1858 to 2077 220 to 1       220/227
(96 %)
5 diff
(97.8 %id)
C16721   .h 1860 to 2166 1 to 306       306/306
(100 %)
4 diff
(98.7 %id)
BX333496 Neuroblastoma Cot 25-normalized .h 1863 to 2160 298 to 1       298/298
(100 %)
1 diff
(99.7 %id)
BE221410 carcinoid, lung .h 1867 to 2218 362 to 11   AAA   352/352
(100 %)
3 diff
(99.2 %id)
AA987938 carcinoid, lung .h 1872 to 2218 349 to 3       347/349
(99 %)
0 diff
(100 %id)
AI698470 pooled .h 1873 to 2224 358 to 7       352/358
(98 %)
0 diff
(100 %id)
AI828119 anaplastic oligodendroglioma, brain .h 1881 to 2218 338 to 1       338/338
(100 %)
6 diff
(98.3 %id)
AA972661 carcinoid, lung .h 1886 to 2219 334 to 1       334/334
(100 %)
0 diff
(100 %id)
AW183138 pooled .h 1897 to 2218 322 to 1       322/322
(100 %)
0 diff
(100 %id)
BF219337 brain, glioblastoma .h 1899 to 2218 1 to 321   AAA   321/321
(100 %)
1 diff
(99.7 %id)
BU729417 eye, human retina .h 1911 to 2218 327 to 19   fully sequenced, AAA   309/309
(100 %)
3 diff
(99.1 %id)
AA936580 pooled .h 1917 to 2218 301 to 1       301/301
(100 %)
1 diff
(99.7 %id)
AA405803 ovarian tumor, ovary .h 1957 to 2218 262 to 1       262/262
(100 %)
0 diff
(100 %id)
T51043 ovary .h 1958 to 2219 1 to 268   fully sequenced,   268/268
(100 %)
6 diff
(97.8 %id)
CA455662 mixed (pool of 40 RNAs) .h 1966 to 2218 1 to 253   AAA   253/253
(100 %)
2 diff
(99.3 %id)
AW136862   .h 1973 to 2218 263 to 18   AAA   246/247
(99 %)
3 diff
(98.8 %id)
AV745353 Pituitary .h 1983 to 2218 1 to 234   AAA   234/234
(100 %)
2 diff
(99.2 %id)
CK820256 Islets of Langerhans, Pancreas .h 1990 to 2218 1 to 229   AAA   229/229
(100 %)
0 diff
(100 %id)
BM142329 Islets of Langerhans, Pancreas .h 2006 to 2218 1 to 213   AAA   213/213
(100 %)
0 diff
(100 %id)
T50980 ovary .h 2059 to 2189 130 to 1   fully sequenced,   130/130
(100 %)
1 diff
(99.3 %id)
BX380826 Placenta Cot 25-normalized .i -9 to 1016 1 to 1014   tiling clone,   1014/1014
(100 %)
29 diff
(97.2 %id)
DA038778   .i 281 to 840 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
BX380825 Placenta Cot 25-normalized .i 1068 to 2111 1019 to 1   tiling clone,   1019/1023
(99 %)
25 diff
(97.6 %id)
AK307736   .j 1 to 1516 1 to 1515   tiling clone,   1515/1515
(100 %)
1 diff
(100.0 %id)
DA032107   .j 2 to 563 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA959408 Spleen .j 12 to 555 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
BM925233 pooled lung and spleen .j 19 to 945 2 to 938       937/1070
(87 %)
26 diff
(97.6 %id)
Z43881 brain, total brain .j 26 to 215 1 to 189       189/189
(100 %)
4 diff
(97.9 %id)
CA487498   .j 44 to 862 1 to 827   tiling clone,   827/889
(93 %)
12 diff
(98.7 %id)
DA375263 thalamus .j 46 to 547 2 to 503   capped   502/502
(100 %)
0 diff
(100 %id)
Z39944 brain, total brain .j 1471 to 1748 278 to 1   tiling clone,   278/278
(100 %)
0 diff
(100 %id)
AK298730   .k 1 to 1954 2 to 1955 exact tiling clone,   1955/1955
(100 %)
1 diff
(100.0 %id)
DC429261   .k 1 to 540 2 to 541       541/541
(100 %)
1 diff
(99.9 %id)
DC364834   .k 121 to 615 1 to 495       495/495
(100 %)
0 diff
(100 %id)
AK074485 whole embryo, mainly head .l 1 to 1778 2 to 1772 D236G S278N tiling clone, available from FLJ,   1772/1772
(100 %)
10 diff
(99.5 %id)
BC004293 Pancreas, adenocarcinoma .l 32 to 1778 1 to 1747 exact tiling clone, available from MGC, AAA   1747/1747
(100 %)
0 diff
(100 %id)
CA495388   .l 155 to 974 1 to 832       832/899
(92 %)
16 diff
(98.3 %id)
CR604047 Neuroblastoma Cot 25-normalized .m 1 to 1659 1 to 1659 exact tiling clone,   1659/1659
(100 %)
0 diff
(100 %id)
BX402179 Neuroblastoma Cot 25-normalized .m 32 to 1053 31 to 1051       1021/1051
(97 %)
8 diff
(99.3 %id)
BX446476 placenta .m 65 to 643 1 to 578       578/578
(100 %)
4 diff
(99.4 %id)
BM019844 astrocytoma grade IV, cell line, brain .m 76 to 827 1 to 750       750/750
(100 %)
6 diff
(99.2 %id)
TI_59390542   .m 77 to 827 100 to 848       749/749
(100 %)
5 diff
(99.4 %id)
CR594503 Neuroblastoma Cot 25-normalized .m 78 to 1684 1 to 1607 exact tiling clone,   1607/1607
(100 %)
0 diff
(100 %id)
BX394658 Neuroblastoma Cot 25-normalized .m 78 to 912 1 to 828   fully sequenced,   828/828
(100 %)
2 diff
(99.8 %id)
BX394657 Neuroblastoma Cot 25-normalized .m 882 to 1684 803 to 1   fully sequenced,   803/803
(100 %)
1 diff
(99.9 %id)
BX433591 placenta .m 1017 to 1711 696 to 1   tiling clone,   696/931
(74 %)
16 diff
(98.3 %id)
AK093777 thymus .n 1 to 2419 2 to 2420 exact tiling clone, available from FLJ,   2420/2420
(100 %)
1 diff
(100.0 %id)
AX748300   .n 1 to 2419 2 to 2420 exact     2420/2420
(100 %)
1 diff
(100.0 %id)
DB111159 thymus .n 1 to 549 2 to 551   capped   550/550
(100 %)
2 diff
(99.7 %id)
CN305633 embryonic stem cells, DMSO-treated H9 cellline .n 79 to 731 1 to 654       654/654
(100 %)
7 diff
(99.0 %id)
BG989945 head_neck .n 1164 to 1614 452 to 4       449/452
(99 %)
0 diff
(100 %id)
DB343338 thymus .n 1877 to 2419 543 to 1       543/543
(100 %)
0 diff
(100 %id)
BI770112 pooled lung and spleen .o 1 to 824 1 to 817   tiling clone,   817/817
(100 %)
14 diff
(98.3 %id)
TI_57178304   .o 1 to 824 39 to 855       817/855
(95 %)
20 diff
(97.7 %id)
BU178916 eye, retinoblastoma .p 1 to 818 1 to 820 L218W A219P L237I S238V V239G ... tiling clone,   820/824
(99 %)
5 diff
(99.4 %id)
CA487865   .q 1 to 731 1 to 738   tiling clone,   738/878
(84 %)
23 diff
(97.4 %id)
CB118927 Liver .q 54 to 510 1 to 457       457/457
(100 %)
2 diff
(99.6 %id)
DB111169 thymus .q 55 to 629 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DB111196 thymus .q 55 to 629 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA693974   .q 389 to 911 2 to 525   tiling clone, capped   524/524
(100 %)
2 diff
(99.7 %id)
BM564324 duodenal adenocarcinoma, cell line, small intestine .q 683 to 1250 1 to 568   tiling clone,   568/1197
(47 %)
5 diff
(99.6 %id)
DA116639 cerebellum .r-u 1 to 602 2 to 603   tiling clone, capped   602/602
(100 %)
0 diff
(100 %id)
DA093351 cerebellum .r-u 2 to 569 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA096526 cerebellum .r-u 2 to 464 2 to 465   capped   464/464
(100 %)
1 diff
(99.8 %id)
DA407538 thalamus .r-u 483 to 1037 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
BX418222 brain, fetal brain .r-u 489 to 1640 27 to 1157   tiling clone,   1131/1167
(96 %)
29 diff
(97.6 %id)
BX418223 brain, fetal brain .r-u 489 to 1344 27 to 881   tiling clone,   855/881
(97 %)
6 diff
(99.4 %id)
DA230462 brain .r-u 573 to 1113 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA158563 amygdala .r-u 576 to 1141 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA107260 cerebellum .r-u 604 to 1154 2 to 552   capped   551/551
(100 %)
5 diff
(99.1 %id)
DA327390 hippocampus .r-u 611 to 1179 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA340364 hippocampus .r-u 611 to 1185 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA123595 cerebellum .r-u 621 to 1172 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA225794 brain .r-u 621 to 1150 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
DB227549 trachea .r-u 704 to 1003 2 to 304   capped   303/303
(100 %)
3 diff
(99.1 %id)
DB227609 trachea .r-u 704 to 1267 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA191543 amygdala .s 1 to 591 2 to 592   tiling clone, capped   591/591
(100 %)
0 diff
(100 %id)
AL533108 adult brain, brain .s 24 to 936 1 to 906 L2P S3P P4A Q5R R6L ...     906/1018
(88 %)
60 diff
(94.2 %id)
DA682901   .t 1 to 803 2 to 816 P206X A224K G225L G226V S227G ... tiling clone, capped   815/816
(99 %)
15 diff
(98.2 %id)
W52313 senescent fibroblast .t 110 to 552 1 to 444       444/444
(100 %)
14 diff
(96.9 %id)
CV806416 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .t 216 to 880 1 to 665   tiling clone,   665/669
(99 %)
2 diff
(99.8 %id)
DB322710   .t 1296 to 1779 481 to 1   tiling clone,   481/482
(99 %)
16 diff
(96.7 %id)
CR596817 Placenta Cot 25-normalized .u 1 to 1301 1 to 1301 exact tiling clone,   1301/1301
(100 %)
0 diff
(100 %id)
TI_57197640   .va 1 to 824 32 to 857   tiling clone,   826/945
(87 %)
22 diff
(97.7 %id)
BI819195 pooled brain, lung, testis .va 4 to 918 1 to 910   tiling clone,   910/911
(99 %)
19 diff
(98.0 %id)
DB461437 testis .vb 1 to 448 1 to 449 A67P E122D A140X Q146P V147A ... tiling clone,   449/449
(100 %)
5 diff
(98.9 %id)
BI199916 brain, neuroblastoma .vc 1 to 677 7 to 693 A8C L109V K110E P111A F112L ... tiling clone,   693/699
(99 %)
31 diff
(95.6 %id)
DA443699 tongue, tumor tissue .vd 1 to 548 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DB102242 thymus .vd 1 to 553 2 to 554   tiling clone, capped   553/553
(100 %)
0 diff
(100 %id)
CD643688 Embryonic Stem cells .vd 266 to 947 34 to 711 P97H P98L Q99R A100P P101L ... tiling clone,   678/794
(85 %)
11 diff
(98.7 %id)
DB144564 thymus .ve-u 1 to 535 2 to 537 A13X L35P C36V E38* tiling clone, capped   536/536
(100 %)
2 diff
(99.7 %id)
BI768734 pooled lung and spleen .vf 1 to 778 1 to 777 exact tiling clone,   777/778
(99 %)
7 diff
(99.2 %id)
TI_57181863   .vf 1 to 778 35 to 811 exact     777/812
(95 %)
12 diff
(98.6 %id)
BU944835 adenocarcinoma, cell line, breast .vf 426 to 1322 1 to 910   tiling clone,   910/922
(98 %)
20 diff
(97.9 %id)
DA297530 hippocampus .vf 748 to 1325 2 to 579   tiling clone, capped   578/578
(100 %)
0 diff
(100 %id)
BE183950 head_neck .vf 1071 to 1267 8 to 210       203/211
(96 %)
15 diff
(92.9 %id)
DB006717 cervix, tumor tissue .vg 1 to 421 2 to 422   tiling clone, capped   421/421
(100 %)
2 diff
(99.6 %id)
DA742628   .vg 5 to 547 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
CR749671 amygdala .vg 63 to 3112 1 to 3050   tiling clone, available from DKFZ, AAA   3050/3050
(100 %)
2 diff
(100.0 %id)
DA344937 substantia nigra .vg 266 to 797 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DA370885 thalamus .vg 432 to 997 2 to 567   tiling clone, capped   566/566
(100 %)
1 diff
(99.9 %id)
DA481426   .vg 435 to 974 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DA507556 brain .vg 435 to 989 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DB133533 thymus .vg 435 to 995 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
CB145500 Liver .vg 483 to 1000 1 to 518       518/518
(100 %)
5 diff
(99.1 %id)
T79918 whole brain .vg 648 to 989 1 to 344       344/347
(99 %)
10 diff
(97.2 %id)
CR985049 T-Lymphocytes .vg 823 to 1326 1 to 504       504/504
(100 %)
1 diff
(99.9 %id)
CB151207 cervix, Uterine .vg 837 to 1290 1 to 454       454/454
(100 %)
7 diff
(98.5 %id)
DA751328   .vg 939 to 1394 2 to 457   capped   456/456
(100 %)
1 diff
(99.8 %id)
DA590905 lung .vg 951 to 1521 2 to 574   capped   573/573
(100 %)
5 diff
(99.2 %id)
DB208773 trachea .vg 997 to 1511 2 to 516   capped   515/515
(100 %)
1 diff
(99.9 %id)
DA966696 stomach .vg 1001 to 1540 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
CB961372 placenta, pre-eclamptic placenta .vg 1015 to 1645 25 to 662       638/819
(77 %)
16 diff
(98.1 %id)
BP283047 bone marrow .vg 1016 to 1597 1 to 582       582/582
(100 %)
8 diff
(98.7 %id)
DA567991 whole embryo, mainly head .vg 1017 to 1722 2 to 713   capped   712/804
(88 %)
13 diff
(98.4 %id)
DA907464   .vg 1017 to 1567 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DA911474   .vg 1017 to 1528 2 to 513   capped   512/512
(100 %)
2 diff
(99.7 %id)
DB253586 uterus .vg 1017 to 1528 2 to 513   capped   512/512
(100 %)
0 diff
(100 %id)
CR607256 Neuroblastoma Cot 25-normalized .vg 1027 to 3079 1 to 2053       2053/2053
(100 %)
0 diff
(100 %id)
BX332451 Neuroblastoma Cot 25-normalized .vg 1027 to 2034 1 to 1000   fully sequenced,   1000/1000
(100 %)
16 diff
(98.4 %id)
DA873360 Prostate .vg 1027 to 1587 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA001319   .vg 1029 to 1530 2 to 503   capped   502/502
(100 %)
0 diff
(100 %id)
DA045484 bladder .vg 1029 to 1580 2 to 556   capped   555/555
(100 %)
4 diff
(99.3 %id)
DA648922   .vg 1029 to 1555 2 to 528   capped   527/527
(100 %)
0 diff
(100 %id)
DA692526   .vg 1029 to 1582 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA714127   .vg 1029 to 1553 2 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
DA719766   .vg 1029 to 1499 2 to 472   capped   471/471
(100 %)
1 diff
(99.8 %id)
DA892126 rectum .vg 1029 to 1585 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
BP205628 coronary artery .vg 1030 to 1611 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BI769304 pooled lung and spleen .vg 1030 to 1868 1 to 839       839/839
(100 %)
9 diff
(99.0 %id)
TI_57179074   .vg 1030 to 1868 28 to 866       839/866
(96 %)
12 diff
(98.7 %id)
BC028055 Cervix, carcinoma .vg 1031 to 2729 12 to 1710   available from MGC, AAA   1699/1699
(100 %)
0 diff
(100 %id)
BX387417 Neuroblastoma Cot 25-normalized .vg 1032 to 1724 1 to 693       693/693
(100 %)
2 diff
(99.8 %id)
DA045195 bladder .vg 1034 to 1596 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA430640 colon .vg 1041 to 1499 2 to 461   capped   460/460
(100 %)
1 diff
(99.8 %id)
BI258522 cervical carcinoma cell line, cervix .vg 1046 to 1912 1 to 883       883/886
(99 %)
39 diff
(95.6 %id)
DA049535   .vg 1067 to 1332 2 to 267   capped   266/266
(100 %)
0 diff
(100 %id)
DB005675 breast, tumor tissue .vg 1081 to 1658 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
BP220212 colon .vg 1087 to 1659 1 to 573       573/573
(100 %)
8 diff
(98.7 %id)
DB004943 breast, tumor tissue .vg 1129 to 1676 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
BX324793 Placenta Cot 25-normalized .vg 1192 to 1992 38 to 835       798/941
(84 %)
31 diff
(96.8 %id)
DA564629 heart .vg 1244 to 1816 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
CV569698 cornea, eye .vg 1251 to 1694 1 to 444       444/444
(100 %)
0 diff
(100 %id)
BE747413 adenocarcinoma cell line, ovary .vg 1265 to 2107 22 to 845       824/979
(84 %)
23 diff
(97.7 %id)
BE742498 adenocarcinoma cell line, ovary .vg 1286 to 2085 1 to 788       788/854
(92 %)
59 diff
(93.1 %id)
BX332450 Neuroblastoma Cot 25-normalized .vg 2004 to 3079 1041 to 1   fully sequenced,   1041/1041
(100 %)
67 diff
(93.6 %id)
BX387416 Neuroblastoma Cot 25-normalized .vg 2335 to 3080 746 to 1       746/746
(100 %)
0 diff
(100 %id)
DB354446 whole embryo, mainly head .vg 2583 to 3112 523 to 1       523/523
(100 %)
12 diff
(97.8 %id)
BX392762 Placenta Cot 25-normalized .vg 2704 to 3110 406 to 1       406/407
(99 %)
18 diff
(95.6 %id)
DB014754 esophageal, tumor tissue .vh 1 to 553 2 to 555 V24X S25L V26R D27* tiling clone, capped   554/554
(100 %)
1 diff
(99.9 %id)
H08615 whole brain .vh 417 to 801 1 to 380   tiling clone,   380/380
(100 %)
11 diff
(97.2 %id)
H08616 whole brain .vh 1904 to 2191 318 to 24   tiling clone, AAA   295/295
(100 %)
8 diff
(97.3 %id)
DB108083 thymus .vi-u 1 to 580 2 to 581 exact tiling clone, capped   580/580
(100 %)
4 diff
(99.4 %id)
CF455457 peripheral nervous system .vi-u 2 to 729 1 to 727 exact tiling clone,   727/727
(100 %)
1 diff
(99.9 %id)
DA328326 hippocampus .vj 1 to 519 2 to 519   tiling clone, capped   518/518
(100 %)
2 diff
(99.7 %id)
DA810136 brain .vj 35 to 594 2 to 561 E50* tiling clone, capped   560/560
(100 %)
1 diff
(99.9 %id)
DA397186 thalamus .vk 1 to 569 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
DA806646 brain .vk 7 to 578 2 to 573 exact tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
DB008163 cervix, tumor tissue .vl 1 to 249 2 to 250 exact tiling clone, capped   249/249
(100 %)
0 diff
(100 %id)
CR618456 HeLa cells Cot 25-normalized Gene RUSC1, variant not shown         Suspected internal deletion, this clone was ignored    
91 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r-u, .s, .t, .u, .va, .vb, .vc, .vd, .ve-u, .vf, .vg, .vh, .vi-u, .vj, .vk, .vl Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI