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Gene RTN4RL1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
43 supporting clones for gene RTN4RL1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AL535679 brain, fetal brain .a 1 to 571 1 to 569 tiling clone,   569/569
(100 %)
7 diff
(98.8 %id)
NM_178568.2   .a 462 to 3623 1 to 3162 RefSeq, AAA   3162/3162
(100 %)
3 diff
(100.0 %id)
AF532859   .a 492 to 1806 12 to 1326     1315/1326
(99 %)
6 diff
(99.6 %id)
AY250219   .a 492 to 1806 12 to 1326     1315/1326
(99 %)
6 diff
(99.6 %id)
BC128608 PCR rescued clones .a 492 to 2296 34 to 1838 tiling clone,   1805/1838
(98 %)
6 diff
(99.7 %id)
AL834409 brain .a 535 to 3623 1 to 3097 tiling clone, available from DKFZ, AAA   3097/3097
(100 %)
8 diff
(99.8 %id)
DB495122 hypothalamus .a 792 to 1277 487 to 2   Submitted on the opposite strand 486/487
(99 %)
0 diff
(100 %id)
CA454639   .a 908 to 1717 1 to 819     819/917
(89 %)
15 diff
(98.4 %id)
CV389754 colon .a 1042 to 1148 107 to 1 tiling clone, Submitted on the opposite strand 107/107
(100 %)
2 diff
(98.2 %id)
AI680692 carcinoid, lung .a 1878 to 2409 1 to 532 tiling clone, Submitted on the opposite strand 532/532
(100 %)
3 diff
(99.5 %id)
AI693887 carcinoid, lung .a 1881 to 2290 1 to 410   Submitted on the opposite strand 410/410
(100 %)
2 diff
(99.6 %id)
BF445114 carcinoid, lung .a 1891 to 2348 1 to 458   Submitted on the opposite strand 458/460
(99 %)
6 diff
(98.7 %id)
AA666242   .a 1971 to 2286 1 to 315   Submitted on the opposite strand 315/315
(100 %)
4 diff
(98.8 %id)
BM718025 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2236 to 2813 1 to 578 tiling clone,   578/580
(99 %)
3 diff
(99.5 %id)
CX752948 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 2267 to 3028 1 to 754   Submitted on the opposite strand 754/763
(98 %)
11 diff
(98.6 %id)
H06250 whole brain .a 2447 to 2932 1 to 496     496/496
(100 %)
26 diff
(94.8 %id)
R60131 whole brain .a 2448 to 2812 1 to 367     367/367
(100 %)
4 diff
(99.0 %id)
R20190 whole brain .a 2473 to 2581 1 to 109     109/109
(100 %)
0 diff
(100 %id)
BX433109 brain, fetal brain .a 2520 to 3105 578 to 1     578/672
(86 %)
8 diff
(98.9 %id)
R49335 whole brain .a 2548 to 2668 134 to 13 AAA   122/123
(99 %)
2 diff
(98.4 %id)
BC023311 Brain, anaplastic oligodendroglioma with1p/19q loss .a 2574 to 3623 1 to 1050 tiling clone, available from MGC, AAA   1050/1050
(100 %)
3 diff
(99.8 %id)
BG910686 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2575 to 3322 1 to 762 available from MGC,   762/908
(83 %)
34 diff
(96.3 %id)
AI300445 carcinoid, lung .a 2653 to 3026 1 to 374   Submitted on the opposite strand 374/375
(99 %)
4 diff
(99.0 %id)
BM826920 Ascites, stomach .a 2828 to 3134 1 to 307     307/307
(100 %)
0 diff
(100 %id)
TI_149300144   .a 2877 to 3623 813 to 79 AAA   735/775
(94 %)
27 diff
(96.6 %id)
BM692581 eye, human retina .a 2894 to 3287 1 to 394 fully sequenced,   394/394
(100 %)
0 diff
(100 %id)
BU618906 Cell Line, Chondrosarcoma .a 2916 to 3623 722 to 16 AAA   707/707
(100 %)
1 diff
(99.9 %id)
CA429077 Cell Line, Chondrosarcoma .a 2917 to 3623 722 to 16 AAA   707/707
(100 %)
0 diff
(100 %id)
BM680479 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2966 to 3620 666 to 17 AAA   650/653
(99 %)
13 diff
(98.1 %id)
AL566015 brain, fetal brain .a 2973 to 3608 636 to 1     636/636
(100 %)
15 diff
(97.7 %id)
BQ445827 Knee, Osteoarthritic Cartilage .a 3004 to 3623 635 to 16 AAA   620/620
(100 %)
0 diff
(100 %id)
BU740371 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3019 to 3623 622 to 16 AAA   607/614
(98 %)
2 diff
(99.7 %id)
AA528243 breast .a 3070 to 3623 572 to 20 AAA   553/556
(99 %)
17 diff
(97.0 %id)
AA453879 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3127 to 3394 1 to 267 fully sequenced,   267/267
(100 %)
3 diff
(98.9 %id)
BX091346 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3128 to 3623 1 to 497 AAA   497/497
(100 %)
1 diff
(99.8 %id)
H06251 whole brain .a 3133 to 3623 496 to 1     496/553
(89 %)
26 diff
(95.3 %id)
BM976284 lung, Primary Lung Cystic Fibrosis EpithelialCells .a 3152 to 3623 488 to 16 AAA   473/473
(100 %)
1 diff
(99.8 %id)
AI399653 Prostate .a 3181 to 3623 467 to 25 AAA   443/443
(100 %)
11 diff
(97.6 %id)
AI278851 carcinoid, lung .a 3208 to 3622 415 to 1     415/415
(100 %)
1 diff
(99.8 %id)
R60067 whole brain .a 3213 to 3623 412 to 1     412/412
(100 %)
7 diff
(98.4 %id)
AA973793 carcinoid, lung .a 3233 to 3622 390 to 1     390/390
(100 %)
4 diff
(99.0 %id)
BM663803 eye, human retina .a 3257 to 3623 383 to 16 fully sequenced, AAA   368/368
(100 %)
1 diff
(99.8 %id)
R44976 whole brain .a 3264 to 3623 375 to 15 AAA   361/441
(81 %)
5 diff
(98.9 %id)
R44717 whole brain .a 3280 to 3623 369 to 13 AAA   357/367
(97 %)
20 diff
(94.6 %id)
BM709737 eye, Retina Foveal and Macular .a 3303 to 3623 1 to 321 AAA   321/321
(100 %)
1 diff
(99.7 %id)
TI_159699481   .a 3329 to 3623 373 to 78 AAA   296/357
(82 %)
4 diff
(98.9 %id)
AA453794 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3364 to 3623 261 to 1 fully sequenced,   261/261
(100 %)
1 diff
(99.7 %id)
Z40655 brain, total brain .a 3378 to 3623 246 to 1     246/246
(100 %)
3 diff
(98.8 %id)
BQ771530 Chondrosarcoma Grade II, Left Pelvis Gene RTN4RL1, variant not shown     AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA Expression Tissue Function, regulation, related genes CI