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Gene RTN4IP1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
108 supporting clones for gene RTN4IP1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB020654 testis .a 1 to 554 2 to 556   tiling clone, capped   555/555
(100 %)
2 diff
(99.7 %id)
DA279821 corpus callosum .a 123 to 610 2 to 490   capped   489/489
(100 %)
3 diff
(99.4 %id)
NM_032730.4   .a 331 to 2966 1 to 2636 exact RefSeq,   2636/2636
(100 %)
0 diff
(100 %id)
DA266760 caudate nucleus .a 332 to 877 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DB038851 testis .a 332 to 908 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DB051074 testis .a 332 to 894 2 to 565   capped   564/564
(100 %)
5 diff
(99.2 %id)
DA395284 thalamus .a 334 to 917 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DA732604   .a 334 to 609 2 to 278   capped   277/277
(100 %)
3 diff
(99.0 %id)
BM922394 leukocyte .a 336 to 1200 65 to 938       872/1228
(71 %)
23 diff
(98.2 %id)
AW247696.
matches multiple genes
lung, small cell carcinoma .a 338 to 662 5 to 329     also hits gene MYBL2 325/329
(98 %)
6 diff
(98.2 %id)
DA539414 Kidney .a 339 to 930 2 to 594   capped   593/593
(100 %)
6 diff
(99.0 %id)
BG721218 testis .a 339 to 993 6 to 661       656/661
(99 %)
6 diff
(99.1 %id)
CX756080 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 344 to 1083 1 to 738     Submitted on the opposite strand 738/747
(98 %)
4 diff
(99.5 %id)
BQ069356 brain, neuroblastoma, cell line .a 348 to 1098 1 to 758       758/1103
(68 %)
27 diff
(97.6 %id)
BQ927802 carcinoma, cell line, Prostate .a 352 to 789 1 to 437       437/1002
(43 %)
7 diff
(99.4 %id)
BQ957823 carcinoma, cell line, Prostate .a 352 to 1087 1 to 740       740/939
(78 %)
20 diff
(97.9 %id)
BQ936729 carcinoma, cell line, Prostate .a 352 to 1235 1 to 891       891/943
(94 %)
24 diff
(97.5 %id)
DN991244 brain, whole brain .a 353 to 990 1 to 638       638/638
(100 %)
5 diff
(99.3 %id)
BG035403 adenocarcinoma, cell line, Liver .a 356 to 1078 1 to 721       721/980
(73 %)
12 diff
(98.8 %id)
CR601619 placenta .a 361 to 2014 1 to 1654 exact tiling clone,   1654/1654
(100 %)
0 diff
(100 %id)
BX439330 placenta .a 361 to 1423 1 to 1054       1054/1054
(100 %)
20 diff
(98.2 %id)
CR736499   .a 362 to 750 1 to 388       388/388
(100 %)
1 diff
(99.8 %id)
BE265140 lung, small cell carcinoma .a 363 to 1073 1 to 714       714/714
(100 %)
40 diff
(94.4 %id)
BM829623 stomach .a 364 to 714 1 to 349       349/349
(100 %)
14 diff
(96.0 %id)
BG720291 testis .a 369 to 964 1 to 596       596/599
(99 %)
12 diff
(98.0 %id)
BI829392 brain, medulla .a 371 to 1063 1 to 695       695/695
(100 %)
14 diff
(98.0 %id)
TI_57176831   .a 371 to 1063 62 to 756       695/756
(91 %)
6 diff
(99.3 %id)
DB442478 testis .a 373 to 805 1 to 433       433/433
(100 %)
3 diff
(99.4 %id)
DA966128 stomach .a 375 to 921 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
CN367023 embryonic stem cells, cell lines H1, H7, andH9 .a 385 to 875 29 to 519       491/519
(94 %)
6 diff
(98.9 %id)
BM857353 stomach .a 391 to 657 1 to 265       265/265
(100 %)
3 diff
(98.9 %id)
CX760104 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 396 to 1132 1 to 732     Submitted on the opposite strand 732/732
(100 %)
7 diff
(99.1 %id)
DB294650   .a 399 to 1213 2 to 820   capped   819/822
(99 %)
9 diff
(99.0 %id)
BE894352 melanotic melanoma, skin .a 400 to 1079 1 to 693       693/977
(70 %)
32 diff
(96.8 %id)
CN367022 embryonic stem cells, cell lines H1, H7, andH9 .a 402 to 658 1 to 257       257/257
(100 %)
2 diff
(99.3 %id)
CX755358 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 410 to 1075 1 to 665       665/665
(100 %)
3 diff
(99.6 %id)
AK313962 testis .a 413 to 1998 1 to 1586 P38H     1586/1586
(100 %)
3 diff
(99.9 %id)
DB049694 testis .a 414 to 982 2 to 570   capped   569/569
(100 %)
3 diff
(99.5 %id)
BF214522 bone marrow, from acute myelogenous leukemia .a 416 to 950 1 to 536       536/845
(63 %)
18 diff
(97.9 %id)
AW403615 lymph .a 425 to 868 1 to 442       442/442
(100 %)
6 diff
(98.7 %id)
TI_154140314   .a 432 to 1154 86 to 805       720/722
(99 %)
28 diff
(96.2 %id)
BF664073 B-cells, primary B-cells from tonsils (cell line) .a 534 to 1147 1 to 617       617/887
(69 %)
26 diff
(97.1 %id)
BF238065 B-cells, primary B-cells from tonsils (cell line) .a 535 to 1218 1 to 683       683/971
(70 %)
18 diff
(98.2 %id)
BG684917 B-cells, primary B-cells from tonsils (cell line) .a 535 to 1199 1 to 662       662/662
(100 %)
8 diff
(98.8 %id)
BG755358 B-cells, primary B-cells from tonsils (cell line) .a 535 to 1232 1 to 703       703/815
(86 %)
12 diff
(98.6 %id)
BC006399 Primary B-Cells from Tonsils .a 536 to 2017 1 to 1482 exact available from MGC, AAA   1482/1482
(100 %)
0 diff
(100 %id)
BF128918 B-cells, primary B-cells from tonsils (cell line) .a 554 to 1205 1 to 658       656/719
(91 %)
12 diff
(98.4 %id)
BP289002 lung .a 589 to 1174 1 to 586       586/586
(100 %)
0 diff
(100 %id)
BG900468 cartilage .a 667 to 982 89 to 404       316/336
(94 %)
1 diff
(99.8 %id)
AF336861   .a 757 to 2017 1 to 1261 V217I D239N S241I D250N D251N ... AAA   1261/1261
(100 %)
40 diff
(96.9 %id)
AL037647 brain .a 757 to 1289 1 to 533       533/540
(98 %)
8 diff
(98.6 %id)
CD105442 brain, Pituitary .a 773 to 1481 1 to 715       715/777
(92 %)
9 diff
(98.9 %id)
AY063761   .a 808 to 1998 1 to 1191 N84Y M317T     1191/1191
(100 %)
5 diff
(99.6 %id)
AA312336   .a 817 to 1088 1 to 272       272/272
(100 %)
0 diff
(100 %id)
BG436890 large cell carcinoma, lung .a 850 to 1390 1 to 562       560/771
(72 %)
40 diff
(94.9 %id)
TI_1948122772   .a 930 to 1458 124 to 652   fully sequenced,   529/652
(81 %)
6 diff
(99.1 %id)
TI_1948122911   .a 930 to 1510 1 to 585   fully sequenced,   585/585
(100 %)
6 diff
(99.0 %id)
TI_1948123064   .a 930 to 1458 129 to 657   fully sequenced,   529/657
(80 %)
6 diff
(99.1 %id)
TI_1948123210   .a 930 to 1458 127 to 655   fully sequenced,   529/655
(80 %)
7 diff
(99.0 %id)
CV026903 mixed .a 934 to 1560 1 to 627       627/627
(100 %)
0 diff
(100 %id)
BQ348179 head_neck .a 1021 to 1610 619 to 31       589/619
(95 %)
2 diff
(99.7 %id)
BI260565 cervical carcinoma cell line, cervix .a 1053 to 1796 1 to 754       754/840
(89 %)
21 diff
(97.5 %id)
TI_1948122773   .a 1397 to 2002 725 to 120   fully sequenced,   606/725
(83 %)
0 diff
(100 %id)
TI_1948123065   .a 1397 to 2002 725 to 120   fully sequenced,   606/725
(83 %)
0 diff
(100 %id)
TI_1948123211   .a 1397 to 2002 725 to 120   fully sequenced,   606/725
(83 %)
0 diff
(100 %id)
TI_1948122912   .a 1446 to 2002 672 to 116   fully sequenced,   557/672
(82 %)
0 diff
(100 %id)
DB384794   .a 1480 to 2019 540 to 1       540/543
(99 %)
7 diff
(98.8 %id)
DB364170   .a 1538 to 2024 488 to 1   tiling clone,   488/488
(100 %)
10 diff
(98.0 %id)
AK095207 thalamus .b 1 to 2306 2 to 2307 N64S tiling clone, available from FLJ,   2307/2307
(100 %)
2 diff
(100.0 %id)
CB132294 Liver .b 1 to 504 2 to 505       505/505
(100 %)
1 diff
(99.9 %id)
CB143318 Liver .b 1 to 357 2 to 358       358/358
(100 %)
3 diff
(99.2 %id)
DA370820 thalamus .b 1 to 532 2 to 534   capped   533/533
(100 %)
2 diff
(99.7 %id)
EC551718 Prostate .b 163 to 258 13 to 108       96/108
(88 %)
6 diff
(94.5 %id)
BX434237 placenta .b 208 to 1087 886 to 7       880/891
(98 %)
8 diff
(99.2 %id)
BX431434 placenta .b 212 to 1095 1 to 878   tiling clone,   878/879
(99 %)
21 diff
(97.7 %id)
BF811899 colon_ins .b 333 to 701 378 to 9     Submitted on the opposite strand 370/388
(95 %)
11 diff
(97.2 %id)
BP273137   .b 386 to 943 1 to 558       558/558
(100 %)
1 diff
(99.9 %id)
BU621544 cell lines, Chondrosarcoma .b 392 to 1100 727 to 19   AAA   709/709
(100 %)
2 diff
(99.8 %id)
EC522819 Prostate .b 422 to 512 1 to 91       91/98
(92 %)
9 diff
(90.9 %id)
EC531952 Prostate .b 426 to 510 7 to 90       84/100
(84 %)
6 diff
(94.0 %id)
AA357861 lung .b 504 to 718 1 to 215       215/215
(100 %)
2 diff
(99.1 %id)
BQ574215 Chondrosarcoma Grade II, Left Pelvis .b 522 to 1100 597 to 19   AAA   579/579
(100 %)
3 diff
(99.5 %id)
BF591333 colon, colon tumor, RER+ .b 527 to 1100 574 to 1       574/574
(100 %)
0 diff
(100 %id)
BF433676 carcinoid, lung .b 545 to 1101 558 to 2       557/567
(98 %)
0 diff
(100 %id)
BF433668 carcinoid, lung .b 550 to 1101 554 to 3       552/565
(97 %)
5 diff
(99.2 %id)
BP393420 pancreatic islet .b 616 to 1115 1 to 500     Submitted on the opposite strand 500/500
(100 %)
0 diff
(100 %id)
DB507322 testis .b 684 to 1101 1 to 418     Submitted on the opposite strand 418/419
(99 %)
1 diff
(99.8 %id)
AI474619 Kidney .b 752 to 1101 351 to 1       351/351
(100 %)
1 diff
(99.8 %id)
BG189849   .b 875 to 1103 1 to 230       230/231
(99 %)
11 diff
(95.3 %id)
BG190377   .b 881 to 1091 1 to 211       211/214
(98 %)
4 diff
(98.2 %id)
BG191855   .b 881 to 1086 1 to 206       206/212
(97 %)
1 diff
(99.6 %id)
BG191856   .b 881 to 1086 1 to 206       206/212
(97 %)
6 diff
(97.2 %id)
BG208380   .b 881 to 1086 222 to 17     Submitted on the opposite strand 206/222
(92 %)
0 diff
(100 %id)
BG217370   .b 881 to 1086 221 to 16     Submitted on the opposite strand 206/221
(93 %)
0 diff
(100 %id)
BG197983   .b 887 to 1086 264 to 65     Submitted on the opposite strand 200/270
(74 %)
0 diff
(100 %id)
AW248031.
matches multiple genes
lung, small cell carcinoma .b 888 to 1102 226 to 11   AAA also hits gene NICN1andAMT 216/216
(100 %)
6 diff
(97.3 %id)
C02357   .b 973 to 1102 1 to 131       131/131
(100 %)
1 diff
(99.3 %id)
BM991615 Bone, Subchondral Bone .b 1094 to 1408 13 to 329     Submitted on the opposite strand 317/329
(96 %)
6 diff
(98.2 %id)
AL711849 human skeletal muscle .b 1433 to 1977 1 to 546       546/546
(100 %)
1 diff
(99.9 %id)
CN315391 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1481 to 2049 1 to 569   tiling clone,   569/569
(100 %)
2 diff
(99.7 %id)
DB310876 thalamus .b 1760 to 2306 549 to 1       549/549
(100 %)
2 diff
(99.7 %id)
BX427378 fetal liver, Liver .c 1 to 951 1 to 941   tiling clone,   941/956
(98 %)
18 diff
(98.2 %id)
BX427377 fetal liver, Liver .c 1074 to 1877 819 to 11   tiling clone,   809/819
(98 %)
21 diff
(97.5 %id)
BQ059479 lymph, lymphoma, cell line .d 1 to 898 1 to 910 D195E N196Y E202G A205G P206S ... tiling clone,   910/1007
(90 %)
23 diff
(97.8 %id)
AF439711 brain .e 1 to 811 1 to 811 M65V P182S tiling clone,   811/814
(99 %)
6 diff
(99.3 %id)
CB986318 Pooled-Glandular .f 1 to 665 5 to 669   tiling clone,   669/701
(95 %)
3 diff
(99.6 %id)
BU622175 Cell Line, Chondrosarcoma .f 304 to 1017 731 to 19   tiling clone, AAA   713/713
(100 %)
1 diff
(99.9 %id)
BG676745 skin, squamous cell carcinoma .g 1 to 699 1 to 699   tiling clone,   699/699
(100 %)
0 diff
(100 %id)
BM793616 Ascites, stomach .g 418 to 917 1 to 498 A10Q V11F C12A S13P Q14K ... tiling clone,   498/498
(100 %)
7 diff
(98.6 %id)
BF905014 marrow .h 1 to 470 15 to 483 N4I M5* tiling clone,   469/483
(97 %)
8 diff
(98.4 %id)
BX108883 lymph node, lymphoma, follicular mixed small and largecell .i 1 to 462 476 to 15 exact tiling clone, AAA   462/462
(100 %)
0 diff
(100 %id)
AI434133 lymph node, lymphoma, follicular mixed small and largecell .i 30 to 462 440 to 8 exact     433/440
(98 %)
2 diff
(99.6 %id)
AI760971 2 pooled tumors (clear cell type), Kidney .j 1 to 208 230 to 23 exact tiling clone, AAA   208/208
(100 %)
5 diff
(97.6 %id)
DB315296.
matches multiple genes
brain Gene RTN4IP1, variant not shown         This clone was ignored, also hits gene peegleyby    
DB315296.
matches multiple genes
brain Gene peegleyby, variant not shown         This clone was ignored, also hits gene peegleyby    
DA489247.
matches multiple genes
brain Gene RTN4IP1, variant not shown       capped This clone was ignored, also hits gene peegleyby    
DA489247.
matches multiple genes
brain Gene peegleyby, variant not shown       capped This clone was ignored, also hits gene peegleyby    
AI309954 2 pooled tumors (clear cell type), Kidney Gene RTN4IP1, variant not shown         This clone was ignored    
DB124056 thymus Gene RTN4IP1, variant not shown       capped This clone was ignored    
DB344156 thymus Gene RTN4IP1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI