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Gene CLIP1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
467 supporting clones for gene CLIP1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA393248 thalamus .a 1 to 586 2 to 587   tiling clone, capped   586/586
(100 %)
0 diff
(100 %id)
DA501948 brain .a 4 to 544 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
DA552205   .a 21 to 539 2 to 520   capped   519/519
(100 %)
1 diff
(99.9 %id)
DA704352   .a 21 to 302 2 to 283   capped   282/287
(98 %)
2 diff
(99.4 %id)
DA719473   .a 21 to 395 2 to 376   capped   375/379
(98 %)
1 diff
(99.8 %id)
DA780784 brain .a 21 to 535 2 to 516   capped   515/515
(100 %)
0 diff
(100 %id)
DA816076   .a 21 to 593 2 to 573   capped   572/572
(100 %)
3 diff
(99.5 %id)
DA856525 placenta .a 21 to 582 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA412986 thalamus .a 26 to 565 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA689876   .a 26 to 554 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DA756709   .a 26 to 524 2 to 500   capped   499/499
(100 %)
0 diff
(100 %id)
DA764710 tongue .a 26 to 581 2 to 557   capped   556/559
(99 %)
4 diff
(99.3 %id)
DA862942 placenta .a 26 to 504 2 to 481   capped   480/480
(100 %)
2 diff
(99.6 %id)
BP298656   .a 28 to 609 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
DA109772 cerebellum .a 29 to 585 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA119351 cerebellum .a 37 to 442 2 to 407   capped   406/406
(100 %)
1 diff
(99.8 %id)
DA440705 tongue, tumor tissue .a 37 to 504 2 to 470   capped   469/469
(100 %)
1 diff
(99.8 %id)
BF849789 lung_normal .a 47 to 470 7 to 430       424/430
(98 %)
9 diff
(98.0 %id)
AW270831 Kidney .a 48 to 321 1 to 274     Submitted on the opposite strand 274/274
(100 %)
0 diff
(100 %id)
AW294721   .a 49 to 574 1 to 522     Submitted on the opposite strand 522/522
(100 %)
4 diff
(99.3 %id)
AW451194   .a 49 to 482 1 to 434     Submitted on the opposite strand 434/436
(99 %)
1 diff
(99.8 %id)
AL713517 human skeletal muscle .a 50 to 582 1 to 533       533/533
(100 %)
0 diff
(100 %id)
BP348871 brain .a 63 to 645 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DA287130 corpus callosum .a 75 to 644 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA650052   .a 83 to 619 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DR002704 fetal brain .a 86 to 766 7 to 687       681/687
(99 %)
1 diff
(99.9 %id)
BC117209 Colon, PCR rescued clones .a 176 to 4575 1 to 4400 S941P D1080E tiling clone,   4400/4400
(100 %)
2 diff
(100.0 %id)
BC126305 Colon, PCR rescued clones .a 176 to 4570 1 to 4395 exact tiling clone,   4395/4395
(100 %)
0 diff
(100 %id)
TI_1520875151   .a 813 to 1995 5 to 1175       1171/1259
(93 %)
47 diff
(96.3 %id)
TI_1320131155   .a 815 to 1909 1 to 1095       1095/1179
(92 %)
26 diff
(97.8 %id)
TI_1520875153   .a 1038 to 2072 1 to 1025       1025/1184
(86 %)
25 diff
(97.9 %id)
AF045653 muscle .a 1508 to 1885 1 to 378       378/378
(100 %)
1 diff
(99.8 %id)
TI_1320134535   .a 1594 to 2112 1 to 519       519/520
(99 %)
6 diff
(98.9 %id)
NM_002956.2   .b 1 to 5880 1 to 5880 exact RefSeq, AAA   5880/5880
(100 %)
0 diff
(100 %id)
A21860   .b 28 to 5880 6 to 5858 exact     5853/5858
(99 %)
12 diff
(99.8 %id)
X64838   .b 28 to 5880 5 to 5857 exact tiling clone,   5853/5857
(99 %)
16 diff
(99.8 %id)
BC062543 Lymph, lymphoma .b 45 to 2116 1 to 2072   available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 2072/2072
(100 %)
8 diff
(99.7 %id)
TI_1520876241   .b 1524 to 2508 19 to 1003       986/1003
(98 %)
22 diff
(97.9 %id)
H19025 whole brain .b 1543 to 1903 361 to 1     Submitted on the opposite strand 361/361
(100 %)
0 diff
(100 %id)
M97501   .c 1 to 5166 1 to 5167 D1034E tiling clone,   5167/5175
(99 %)
3 diff
(100.0 %id)
NM_198240.1   .c 1 to 5775 1 to 5775 exact RefSeq, AAA   5775/5775
(100 %)
0 diff
(100 %id)
AI219865 pooled .c 5 to 884 1 to 874     Submitted on the opposite strand 874/932
(93 %)
80 diff
(91.5 %id)
BQ061621 lymph, lymphoma, cell line .c 46 to 945 1 to 908   available from MGC,   908/1075
(84 %)
20 diff
(98.2 %id)
BU656149 blood .c 50 to 593 20 to 563       544/563
(96 %)
10 diff
(98.3 %id)
H19317 whole brain .c 58 to 453 1 to 403     Submitted on the opposite strand 403/406
(99 %)
11 diff
(97.3 %id)
N72093 melanocyte .c 58 to 459 1 to 407     Submitted on the opposite strand 407/407
(100 %)
8 diff
(98.1 %id)
AA917679 Kidney .c 58 to 519 1 to 450     Submitted on the opposite strand 450/454
(99 %)
12 diff
(97.4 %id)
FN056812 breast carcinoma .c 66 to 168 103 to 1     Submitted on the opposite strand 103/103
(100 %)
0 diff
(100 %id)
BC114213 PCR rescued clones .c 86 to 4374 1 to 4289 S193G S324P T605A D636N L720P ... tiling clone,   4289/4300
(99 %)
24 diff
(99.5 %id)
TI_1520874339   .c 114 to 1154 50 to 1095       1046/1277
(81 %)
15 diff
(98.9 %id)
TI_1520875637   .c 114 to 637 240 to 763     Submitted on the opposite strand 524/766
(68 %)
11 diff
(98.6 %id)
TI_1520875751   .c 114 to 1093 45 to 1012       968/1205
(80 %)
19 diff
(98.5 %id)
TI_1320132085   .c 114 to 639 238 to 766     Submitted on the opposite strand 529/768
(68 %)
29 diff
(96.3 %id)
TI_1320132533   .c 114 to 1264 49 to 1193       1145/1269
(90 %)
27 diff
(97.9 %id)
TI_1320134559   .c 114 to 425 245 to 556     Submitted on the opposite strand 312/556
(56 %)
10 diff
(98.3 %id)
CN271562 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 133 to 809 1 to 677       677/677
(100 %)
2 diff
(99.8 %id)
TI_1948228392   .c 151 to 1070 132 to 1049       918/1282
(71 %)
56 diff
(95.7 %id)
TI_1948228393   .c 151 to 945 124 to 927       804/1282
(62 %)
29 diff
(97.8 %id)
TI_1948228986   .c 151 to 1035 134 to 1028       895/1325
(67 %)
26 diff
(98.1 %id)
TI_1948228987   .c 151 to 950 122 to 928       807/1233
(65 %)
18 diff
(98.6 %id)
TI_1948229291   .c 151 to 944 129 to 929       803/1369
(58 %)
33 diff
(97.6 %id)
TI_1948229292   .c 151 to 1036 123 to 1013       891/1215
(73 %)
16 diff
(98.7 %id)
EL736409 mixed .c 156 to 740 1 to 585       585/585
(100 %)
0 diff
(100 %id)
BE277059 melanotic melanoma, skin .c 282 to 993 1 to 707       707/711
(99 %)
6 diff
(99.2 %id)
BE277496 melanotic melanoma, skin .c 282 to 898 1 to 618       618/618
(100 %)
4 diff
(99.4 %id)
BE388741 endometrium, adenocarcinoma cell line, uterus .c 282 to 893 1 to 611       611/611
(100 %)
1 diff
(99.9 %id)
BE711246 head_neck .c 291 to 676 386 to 1       386/386
(100 %)
1 diff
(99.8 %id)
AA306705   .c 301 to 575 12 to 301       290/301
(96 %)
6 diff
(98.1 %id)
CN271567 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 318 to 661 13 to 356       344/358
(96 %)
1 diff
(99.8 %id)
BX282830   .c 369 to 744 1 to 385       385/386
(99 %)
1 diff
(99.8 %id)
CR737752   .c 369 to 744 1 to 385       385/386
(99 %)
1 diff
(99.8 %id)
CA395393 eye, RPE/choroid .c 454 to 987 1 to 534       534/534
(100 %)
0 diff
(100 %id)
TI_1520875149   .c 455 to 1466 1 to 1009       1009/1218
(82 %)
31 diff
(97.5 %id)
AA307304 colon .c 610 to 1032 1 to 423       423/423
(100 %)
0 diff
(100 %id)
BF836017 head_neck .c 667 to 1153 491 to 5     Submitted on the opposite strand 487/491
(99 %)
0 diff
(100 %id)
BF838263 head_neck .c 667 to 1153 491 to 5     Submitted on the opposite strand 487/491
(99 %)
0 diff
(100 %id)
BP350933   .c 732 to 1313 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
AA313570 colon .c 733 to 1018 1 to 286       286/286
(100 %)
0 diff
(100 %id)
EC451630 Prostate .c 879 to 981 1 to 103       103/103
(100 %)
2 diff
(98.1 %id)
BM008628 adenocarcinoma, Pancreas .c 982 to 1825 1 to 854       854/1044
(81 %)
27 diff
(97.5 %id)
TI_59386333   .c 983 to 1825 62 to 914   AAA   853/1034
(82 %)
26 diff
(97.5 %id)
BP283999 bone marrow .c 988 to 1571 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BP284040 bone marrow .c 988 to 1557 1 to 568       568/582
(97 %)
23 diff
(96.1 %id)
BF988258 placenta_normal .c 1018 to 1398 1 to 383       383/383
(100 %)
9 diff
(97.7 %id)
BG434516 placenta .c 1385 to 2133 1 to 736       736/738
(99 %)
20 diff
(97.3 %id)
AW388653 stomach .c 1421 to 2012 1 to 591       591/639
(92 %)
6 diff
(99.1 %id)
AW388621 stomach .c 1430 to 2000 33 to 605       573/605
(94 %)
11 diff
(98.2 %id)
AY563000   .c 1431 to 1712 1 to 282       282/282
(100 %)
2 diff
(99.3 %id)
BX484061   .c 1457 to 1897 1 to 442       442/442
(100 %)
7 diff
(98.5 %id)
TI_154089196   .c 1466 to 2013 623 to 76   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 548/643
(85 %)
5 diff
(99.3 %id)
CA432835 mixed .c 1517 to 2013 501 to 5   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 497/501
(99 %)
0 diff
(100 %id)
F01274 leg muscle, skeletal muscle .c 1558 to 1889 333 to 2       332/336
(98 %)
0 diff
(100 %id)
W01145 melanocyte .c 1571 to 1994 417 to 1     Submitted on the opposite strand 417/417
(100 %)
6 diff
(98.6 %id)
DW434034 Liver .c 1632 to 1875 17 to 260       244/260
(93 %)
9 diff
(96.6 %id)
H99938 melanocyte .c 1640 to 2001 365 to 1       365/365
(100 %)
6 diff
(98.4 %id)
AA069706   .c 1646 to 1986 341 to 1       341/341
(100 %)
0 diff
(100 %id)
TI_1320131145   .c 1653 to 2727 10 to 1076       1069/1233
(86 %)
22 diff
(98.3 %id)
BF673049 muscle (skeletal) .c 1684 to 2340 1 to 646       646/853
(75 %)
16 diff
(98.2 %id)
BF844284 head_neck .c 1710 to 2139 8 to 437       430/437
(98 %)
6 diff
(98.7 %id)
DW442241 Liver .c 1749 to 1967 17 to 235       219/235
(93 %)
6 diff
(97.5 %id)
DW446610 Liver .c 1749 to 1948 17 to 216       200/216
(92 %)
6 diff
(97.3 %id)
BM459794 leiomyosarcoma, uterus .c 1778 to 2669 20 to 912       893/913
(97 %)
11 diff
(98.8 %id)
TI_1320131149   .c 1795 to 2884 1 to 1082       1082/1260
(85 %)
22 diff
(98.3 %id)
AL598471   .c 1800 to 2605 1 to 809       809/811
(99 %)
5 diff
(99.4 %id)
AA300525 testis .c 1816 to 2087 1 to 272       272/272
(100 %)
1 diff
(99.7 %id)
DA233337 brain .c 1819 to 2391 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB277108 uterus .c 1823 to 2196 2 to 375   capped   374/374
(100 %)
0 diff
(100 %id)
BG433746 Kidney .c 1856 to 2553 1 to 698       698/698
(100 %)
8 diff
(98.9 %id)
AA355240   .c 1873 to 2160 1 to 290       290/290
(100 %)
2 diff
(99.4 %id)
AW368266 head_neck .c 1897 to 2458 1 to 562       562/562
(100 %)
7 diff
(98.8 %id)
BF088374 head_neck .c 1977 to 2289 326 to 19       308/437
(70 %)
0 diff
(100 %id)
BE818917 breast_normal .c 1982 to 2349 371 to 4       368/372
(98 %)
0 diff
(100 %id)
BQ049201 lymph, lymphoma, cell line .c 1994 to 2763 819 to 44     Submitted on the opposite strand 776/1036
(74 %)
14 diff
(98.7 %id)
CD243698 testis .c 2018 to 2856 1 to 849       849/915
(92 %)
25 diff
(97.3 %id)
DB225646 trachea .c 2039 to 2597 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
BE002271 breast_normal .c 2059 to 2300 18 to 259       242/266
(90 %)
3 diff
(98.9 %id)
BE766074 nervous_tumor .c 2120 to 2319 9 to 208       200/208
(96 %)
6 diff
(97.2 %id)
DB277555 uterus .c 2125 to 2673 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
BQ631773 Pancreas, Purified pancreatic islet .c 2166 to 2678 1 to 513       513/587
(87 %)
6 diff
(99.0 %id)
DA241349 brain .c 2220 to 2791 2 to 573   capped   572/573
(99 %)
1 diff
(99.9 %id)
BP382984 ilea mucosa .c 2285 to 2782 1 to 496       496/874
(56 %)
8 diff
(99.1 %id)
CA395096 eye, RPE/choroid .c 2314 to 2816 8 to 510       503/510
(98 %)
6 diff
(98.9 %id)
BU192156 large cell carcinoma, lung .c 2389 to 3026 1 to 638   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 638/640
(99 %)
4 diff
(99.4 %id)
TI_1320131159   .c 2407 to 3472 9 to 1066       1058/1223
(86 %)
27 diff
(97.8 %id)
BQ278921 adenocarcinoma, cell line, breast .c 2423 to 3266 1 to 848       848/983
(86 %)
6 diff
(99.4 %id)
AV752786 Pituitary .c 2428 to 2949 330 to 851   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 526/860
(61 %)
15 diff
(98.3 %id)
BP364071 lung .c 2448 to 3029 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AW752434 colon .c 2462 to 2964 22 to 528       504/528
(95 %)
21 diff
(96.1 %id)
DA236693 brain .c 2464 to 3039 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
CU445467 epidermis .c 2616 to 3324 729 to 21     Submitted on the opposite strand 709/729
(97 %)
3 diff
(99.6 %id)
BU601580 mixed (pool of 40 RNAs) .c 2623 to 3354 1 to 741       741/751
(98 %)
20 diff
(97.4 %id)
CN271563 embryonic stem cells, cell lines H1, H7, andH9 .c 2686 to 3301 1 to 616       616/616
(100 %)
1 diff
(99.9 %id)
AW364320 denis_drash .c 2745 to 2877 150 to 17       134/150
(89 %)
0 diff
(100 %id)
DW434086 Liver .c 2757 to 3000 17 to 260       244/260
(93 %)
7 diff
(97.4 %id)
DW437984 Liver .c 2759 to 2983 20 to 247       228/247
(92 %)
13 diff
(94.8 %id)
CD690502 normal nasopharynx .c 2768 to 3364 38 to 634       597/634
(94 %)
8 diff
(98.8 %id)
CB136215 Liver .c 2774 to 3242 47 to 515       469/515
(91 %)
6 diff
(98.9 %id)
DA821489 pericardium .c 2822 to 3389 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DB157520 thymus .c 2835 to 3437 2 to 604   capped   603/603
(100 %)
1 diff
(99.9 %id)
DA166939 amygdala .c 2857 to 3411 2 to 558   capped   557/557
(100 %)
3 diff
(99.5 %id)
AU131910   .c 2887 to 3588 2 to 712   capped, AAA   711/814
(87 %)
14 diff
(98.3 %id)
DA385615 thalamus .c 2923 to 3519 2 to 600   capped   599/599
(100 %)
4 diff
(99.4 %id)
BM824350 Ascites, stomach .c 2935 to 3471 1 to 537       537/537
(100 %)
1 diff
(99.9 %id)
FN113653 breast carcinoma .c 2946 to 3012 1 to 66       66/66
(100 %)
2 diff
(97.0 %id)
AI471426 colon, moderately-differentiated adenocarcinoma .c 2971 to 3462 481 to 1       481/481
(100 %)
19 diff
(96.1 %id)
DA881147   .c 3006 to 3572 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
AW387160 stomach .c 3007 to 3267 1 to 259       259/277
(93 %)
9 diff
(96.8 %id)
BP419108 small intestine .c 3048 to 3530 1 to 484     Submitted on the opposite strand 484/484
(100 %)
2 diff
(99.6 %id)
BM548614 brain, hippocampus .c 3050 to 3923 32 to 918       885/1119
(79 %)
45 diff
(96.0 %id)
DW426180 Liver .c 3115 to 3381 17 to 283       267/283
(94 %)
7 diff
(97.6 %id)
DW429295 Liver .c 3115 to 3503 17 to 405       389/405
(96 %)
6 diff
(98.6 %id)
BP243995 Liver .c 3130 to 3697 1 to 568       568/568
(100 %)
4 diff
(99.3 %id)
CA312123 Human Lung Epithelial cells, lung .c 3147 to 3663 521 to 5   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 517/587
(88 %)
5 diff
(99.2 %id)
AA091079   .c 3165 to 3421 1 to 253       253/281
(90 %)
12 diff
(95.8 %id)
TI_1320131167   .c 3165 to 4360 1 to 1190       1190/1200
(99 %)
25 diff
(98.0 %id)
TI_1520875155   .c 3171 to 4202 6 to 1028       1023/1203
(85 %)
25 diff
(98.0 %id)
BX505110   .c 3179 to 3840 1 to 662       662/662
(100 %)
0 diff
(100 %id)
DB465912 hippocampus .c 3186 to 3607 1 to 422       422/422
(100 %)
0 diff
(100 %id)
BF718485 epidermis, skin .c 3197 to 3314 118 to 1       118/118
(100 %)
1 diff
(99.2 %id)
BF994097 placenta_normal .c 3215 to 3390 186 to 12       175/188
(93 %)
3 diff
(98.5 %id)
BX382210 Placenta Cot 25-normalized .c 3220 to 4033 1 to 814       814/814
(100 %)
4 diff
(99.6 %id)
CN271564 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 3267 to 3972 14 to 719       706/719
(98 %)
7 diff
(99.1 %id)
BQ366326 placenta_normal .c 3292 to 3636 1 to 349       349/349
(100 %)
15 diff
(95.8 %id)
DA146303 amygdala .c 3303 to 3774 2 to 470   capped   469/469
(100 %)
5 diff
(99.0 %id)
AA304938 colon .c 3353 to 3861 2 to 509       508/509
(99 %)
7 diff
(98.7 %id)
BU788009 insulinoma, Pancreas .c 3361 to 3863 2 to 504       503/504
(99 %)
6 diff
(98.9 %id)
CK902638 insulinoma, Pancreas .c 3361 to 3863 2 to 504       503/504
(99 %)
10 diff
(98.1 %id)
BG620550 placenta .c 3366 to 3752 1 to 387       387/387
(100 %)
0 diff
(100 %id)
BU784341 insulinoma, Pancreas .c 3366 to 3859 494 to 1       494/494
(100 %)
0 diff
(100 %id)
CU456516 epidermis .c 3379 to 3956 7 to 583       581/584
(99 %)
10 diff
(98.3 %id)
BP274106 Kidney .c 3379 to 3958 1 to 580       580/580
(100 %)
0 diff
(100 %id)
TI_1520877565   .c 3384 to 4014 634 to 4       631/679
(92 %)
8 diff
(98.9 %id)
TI_1320132537   .c 3386 to 4377 1054 to 67       988/1230
(80 %)
26 diff
(97.9 %id)
ES310884 scalp interfollicular dermis, skin .c 3425 to 3735 1 to 311       311/311
(100 %)
2 diff
(99.4 %id)
DA839439 placenta .c 3437 to 3986 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA177422 amygdala .c 3479 to 3983 2 to 507   capped   506/508
(99 %)
2 diff
(99.7 %id)
TI_1520875643   .c 3491 to 4147 659 to 3       657/684
(96 %)
4 diff
(99.5 %id)
BE932258 head_neck .c 3509 to 3759 1 to 251       251/260
(96 %)
1 diff
(99.7 %id)
DA296764 hippocampus .c 3510 to 4076 2 to 574   capped   568/573
(99 %)
1 diff
(99.9 %id)
DA521856 brain .c 3510 to 4068 2 to 566   capped   560/565
(99 %)
3 diff
(99.5 %id)
BP195975 brain .c 3512 to 4086 1 to 582       577/582
(99 %)
3 diff
(99.5 %id)
DB474492 hippocampus .c 3517 to 4008 1 to 498       493/498
(98 %)
2 diff
(99.6 %id)
DA176048 amygdala .c 3527 to 4061 2 to 542   capped   536/541
(99 %)
1 diff
(99.9 %id)
BM926316 brain .c 3527 to 4386 20 to 893       869/999
(86 %)
25 diff
(97.5 %id)
DA149141 amygdala .c 3530 to 4091 2 to 567   capped   566/566
(100 %)
5 diff
(99.2 %id)
DA172892 amygdala .c 3530 to 4090 2 to 568   capped   562/567
(99 %)
2 diff
(99.7 %id)
CU454885 epidermis .c 3539 to 3802 1 to 264       264/264
(100 %)
7 diff
(97.4 %id)
TI_1320132077   .c 3549 to 4150 604 to 2       603/604
(99 %)
3 diff
(99.6 %id)
BP345910 synovial membrane .c 3551 to 4131 1 to 580       580/580
(100 %)
2 diff
(99.7 %id)
BU944482 adenocarcinoma, cell line, breast .c 3610 to 4341 198 to 947       746/800
(93 %)
100 diff
(87.5 %id)
AU137246 placenta .c 3651 to 4352 2 to 705   capped   704/771
(91 %)
8 diff
(99.0 %id)
EL594198 epidermis, skin .c 3729 to 4500 11 to 771       761/829
(91 %)
18 diff
(97.9 %id)
BE928362 colon .c 3744 to 3955 214 to 3       212/214
(99 %)
5 diff
(97.7 %id)
AV722860 hypothalamus .c 3746 to 4399 1 to 651       646/655
(98 %)
15 diff
(97.8 %id)
AI904193 breast .c 3750 to 4144 398 to 1       398/415
(95 %)
13 diff
(96.9 %id)
BM856968 stomach .c 3803 to 4215 1 to 413       413/413
(100 %)
0 diff
(100 %id)
BG005255 placenta_normal .c 3808 to 4197 1 to 389       389/389
(100 %)
1 diff
(99.8 %id)
CA314875 Human Lung Epithelial cells, lung .c 3815 to 4541 745 to 19   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 727/727
(100 %)
0 diff
(100 %id)
W32126 parathyroid gland, parathyroid tumor .c 3830 to 4062 1 to 236       235/236
(99 %)
9 diff
(96.2 %id)
BF813790 colon_ins .c 3833 to 4411 1 to 579       579/579
(100 %)
3 diff
(99.5 %id)
TI_149287150   .c 3839 to 4540 789 to 92   AAA   698/1070
(65 %)
6 diff
(99.5 %id)
BX370124 Placenta Cot 25-normalized .c 3850 to 4615 1 to 776       776/903
(85 %)
26 diff
(97.2 %id)
BE161989 head_neck .c 3871 to 4522 27 to 678       652/678
(96 %)
17 diff
(97.5 %id)
CN271569 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 3959 to 4748 8 to 797       790/797
(99 %)
7 diff
(99.2 %id)
BM972520 lung .c 3962 to 4540 603 to 26   AAA   578/585
(98 %)
0 diff
(100 %id)
AA463669 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3979 to 4223 1 to 245       245/245
(100 %)
2 diff
(99.2 %id)
BE162055 head_neck .c 3980 to 4405 48 to 483       440/483
(91 %)
25 diff
(94.9 %id)
BE161944 head_neck .c 3989 to 4620 643 to 14     Submitted on the opposite strand 630/710
(88 %)
3 diff
(99.6 %id)
TI_1520872403   .c 3990 to 4377 516 to 129       388/519
(74 %)
1 diff
(99.9 %id)
BX477400   .c 4010 to 4513 1 to 504       504/504
(100 %)
0 diff
(100 %id)
BE933721 head_neck .c 4029 to 4460 439 to 9       431/439
(98 %)
10 diff
(97.8 %id)
BF575043 muscle (skeletal) .c 4046 to 4710 1 to 653       653/700
(93 %)
32 diff
(95.5 %id)
DA142011 alzheimer cortex .c 4088 to 4628 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA140897 alzheimer cortex .c 4099 to 4735 2 to 638   capped   637/637
(100 %)
0 diff
(100 %id)
N40066 melanocyte .c 4232 to 4546 1 to 315       315/315
(100 %)
1 diff
(99.7 %id)
CU453690 epidermis .c 4252 to 5001 759 to 9   tiling clone, Submitted on the opposite strand 751/759
(98 %)
10 diff
(98.7 %id)
BE737084 adenocarcinoma, Pancreas .c 4335 to 5034 23 to 709       687/993
(69 %)
6 diff
(99.4 %id)
W03421 melanocyte .c 4338 to 4754 1 to 424       424/424
(100 %)
8 diff
(98.2 %id)
BF854292 lung_normal .c 4375 to 4939 1 to 565       565/565
(100 %)
2 diff
(99.7 %id)
BP203268 coronary artery .c 4388 to 4952 1 to 565       565/574
(98 %)
11 diff
(98.1 %id)
BP338469 Spleen .c 4391 to 4972 1 to 582       582/582
(100 %)
0 diff
(100 %id)
R81759 placenta .c 4439 to 4840 1 to 405       405/407
(99 %)
19 diff
(95.4 %id)
BU929116 placenta .c 4458 to 5237 1 to 780       780/780
(100 %)
7 diff
(99.2 %id)
BF856793 prostate_tumor .c 4470 to 4940 475 to 3     Submitted on the opposite strand 473/475
(99 %)
0 diff
(100 %id)
BY995466   .c 4501 to 5211 5 to 715       711/715
(99 %)
6 diff
(99.2 %id)
CD103158 Pooled-Skin .c 4506 to 5157 1 to 667       667/794
(84 %)
23 diff
(97.2 %id)
T27835 heart .c 4559 to 4905 1 to 351       351/353
(99 %)
5 diff
(98.6 %id)
BF671876 muscle (skeletal) .c 4562 to 4998 1 to 441       441/441
(100 %)
15 diff
(96.6 %id)
AW950046   .c 4570 to 5191 1 to 622       622/622
(100 %)
0 diff
(100 %id)
AW950144   .c 4570 to 5174 1 to 605       605/605
(100 %)
0 diff
(100 %id)
R62261 placenta .c 4570 to 4952 1 to 394       394/404
(97 %)
13 diff
(96.8 %id)
BQ082726 stomach .c 4607 to 5123 1 to 517       517/517
(100 %)
0 diff
(100 %id)
BM823104 stomach .c 4608 to 4996 1 to 390       390/390
(100 %)
3 diff
(99.3 %id)
AI094608 brain, glioblastoma (pooled) .c 4614 to 5122 508 to 1       508/508
(100 %)
6 diff
(98.9 %id)
AV687533 hepatocellular carcinoma .c 4633 to 5055 1 to 414       414/414
(100 %)
5 diff
(98.8 %id)
BG055016 brain, glioblastoma (pooled) .c 4637 to 5121 485 to 1       485/485
(100 %)
0 diff
(100 %id)
BF693130 muscle (skeletal) .c 4651 to 5329 1 to 650       650/823
(78 %)
30 diff
(96.4 %id)
AI088525 uterus .c 4653 to 5164 516 to 1       516/521
(99 %)
54 diff
(89.7 %id)
AI418878 brain, glioblastoma (pooled) .c 4664 to 5121 452 to 1       452/461
(98 %)
6 diff
(98.7 %id)
CN271566 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 4683 to 5391 1 to 709       709/709
(100 %)
2 diff
(99.8 %id)
CR738696 germinal center B cell .c 4688 to 5393 1 to 706   tiling clone,   706/706
(100 %)
0 diff
(100 %id)
AA283666 germinal center B cell .c 4688 to 5103 1 to 416       416/416
(100 %)
1 diff
(99.8 %id)
AI097556 brain, glioblastoma (pooled) .c 4723 to 5121 410 to 12   AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 399/513
(77 %)
6 diff
(98.9 %id)
AA143037 uterus .c 4742 to 5310 1 to 564       564/602
(93 %)
8 diff
(98.7 %id)
BF223310 carcinoid, lung .c 4745 to 5165 1 to 421     Submitted on the opposite strand 421/421
(100 %)
2 diff
(99.6 %id)
AA962506 carcinoid, lung .c 4747 to 5158 1 to 412     Submitted on the opposite strand 412/412
(100 %)
1 diff
(99.8 %id)
AI458363 carcinoid, lung .c 4747 to 5186 1 to 440     Submitted on the opposite strand 440/440
(100 %)
3 diff
(99.4 %id)
BG435303 placenta .c 4753 to 5475 1 to 721       721/721
(100 %)
3 diff
(99.6 %id)
AV753900 pituitary tumor .c 4782 to 5320 1 to 537       537/541
(99 %)
6 diff
(98.9 %id)
DA092030 cerebellum .c 4789 to 5328 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
R28129 placenta .c 4803 to 5095 12 to 304       293/304
(96 %)
6 diff
(98.1 %id)
TI_149307806   .c 4806 to 5737 1019 to 93   AAA   927/990
(93 %)
36 diff
(96.4 %id)
BE567215 bladder, carcinoma, cell line .c 4809 to 5522 1 to 705       705/717
(98 %)
31 diff
(95.7 %id)
TI_159719437   .c 4816 to 5774 1029 to 74   AAA   956/1056
(90 %)
31 diff
(97.1 %id)
TI_227713215   .c 4900 to 5737 889 to 59   AAA   831/1004
(82 %)
7 diff
(99.4 %id)
AA459059 ovarian tumor, ovary .c 4922 to 5166 1 to 245       245/245
(100 %)
15 diff
(93.9 %id)
AA193389 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 4935 to 5166 1 to 232       232/232
(100 %)
1 diff
(99.6 %id)
TI_149301852   .c 4990 to 5737 834 to 89   AAA   746/920
(81 %)
7 diff
(99.3 %id)
BM980141 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 4990 to 5737 760 to 15   AAA   746/747
(99 %)
7 diff
(99.1 %id)
AI351391   .c 4993 to 5427 436 to 1       436/515
(84 %)
17 diff
(96.7 %id)
AI761392 pooled .c 4995 to 5739 736 to 5       732/736
(99 %)
0 diff
(100 %id)
AA215538 germinal center B cell .c 5015 to 5476 1 to 467       467/467
(100 %)
6 diff
(98.8 %id)
BM979517 lung, Primary Lung Epithelial Cells .c 5015 to 5737 741 to 19   AAA   723/723
(100 %)
7 diff
(99.1 %id)
AI739578 colon, colon tumor, RER+ .c 5020 to 5739 718 to 6       713/718
(99 %)
0 diff
(100 %id)
AV733657 pheochromocytoma .c 5036 to 5696 1 to 654       654/656
(99 %)
9 diff
(98.7 %id)
TI_149313538   .c 5042 to 5775 824 to 92   AAA   733/940
(77 %)
17 diff
(98.2 %id)
AW193800 pooled germ cell tumors .c 5046 to 5739 695 to 1       695/717
(96 %)
9 diff
(98.8 %id)
BX373761 Placenta Cot 25-normalized .c 5052 to 5739 686 to 1       686/876
(78 %)
26 diff
(97.1 %id)
CB117305 Liver .c 5056 to 5598 1 to 543       543/543
(100 %)
5 diff
(99.1 %id)
TI_149276915   .c 5061 to 5741 766 to 85   AAA   682/683
(99 %)
8 diff
(98.9 %id)
BF216040 brain, glioblastoma .c 5063 to 5735 1 to 671   AAA   671/671
(100 %)
29 diff
(95.7 %id)
R70078 placenta .c 5070 to 5425 1 to 362       362/367
(98 %)
13 diff
(96.5 %id)
AI805325 pooled .c 5074 to 5739 663 to 2       662/663
(99 %)
0 diff
(100 %id)
CB305431 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 5075 to 5775 718 to 19   AAA   700/701
(99 %)
7 diff
(99.1 %id)
R32139 placenta .c 5103 to 5401 1 to 300   fully sequenced,   300/300
(100 %)
2 diff
(99.4 %id)
R78160 placenta .c 5103 to 5447 1 to 351       351/351
(100 %)
12 diff
(96.6 %id)
BQ003243 Chondrosarcoma, Left Pelvis .c 5106 to 5737 643 to 15   AAA   629/629
(100 %)
5 diff
(99.3 %id)
R69282 placenta .c 5108 to 5535 7 to 440       434/443
(97 %)
5 diff
(98.9 %id)
BQ083520 stomach .c 5109 to 5590 1 to 480       480/480
(100 %)
8 diff
(98.4 %id)
R32685 placenta .c 5120 to 5422 1 to 320       320/321
(99 %)
24 diff
(92.6 %id)
CB852801 Human Lung Epithelial cells, lung .c 5121 to 5774 672 to 19   AAA   654/654
(100 %)
2 diff
(99.7 %id)
CD367543 Alveolar Macrophage, lung .c 5121 to 5737 630 to 15   AAA   616/616
(100 %)
1 diff
(99.9 %id)
TI_153989828   .c 5134 to 5775 744 to 103   AAA   642/642
(100 %)
8 diff
(98.8 %id)
BM969038 lung, Primary Lung Epithelial Cells .c 5137 to 5741 623 to 19   AAA   605/605
(100 %)
1 diff
(99.9 %id)
BF378409 uterus .c 5154 to 5348 6 to 198       193/199
(96 %)
10 diff
(95.0 %id)
BE774707 uterus .c 5157 to 5322 26 to 190       165/190
(86 %)
6 diff
(96.9 %id)
BE774841 uterus .c 5157 to 5349 18 to 208       191/220
(86 %)
8 diff
(96.4 %id)
AW795650 uterus .c 5166 to 5268 103 to 1       103/103
(100 %)
4 diff
(96.2 %id)
BE774789 uterus .c 5166 to 5347 177 to 2       176/177
(99 %)
0 diff
(100 %id)
BF093658 uterus .c 5166 to 5359 1 to 193       193/194
(99 %)
10 diff
(94.9 %id)
BE774725 uterus .c 5168 to 5349 1 to 179       179/181
(98 %)
8 diff
(95.6 %id)
F01132 leg muscle, skeletal muscle .c 5169 to 5502 1 to 335       335/335
(100 %)
4 diff
(98.9 %id)
BG620796 placenta .c 5185 to 5777 1 to 595       595/627
(94 %)
9 diff
(98.6 %id)
AW274916 pooled germ cell tumors .c 5196 to 5739 544 to 1       544/544
(100 %)
0 diff
(100 %id)
TI_149278850   .c 5208 to 5737 614 to 88   AAA   527/1045
(50 %)
5 diff
(99.6 %id)
BM969379 lung, Primary Lung Epithelial Cells .c 5208 to 5737 541 to 15   AAA   527/548
(96 %)
5 diff
(99.1 %id)
AI913555 Kidney .c 5210 to 5740 531 to 1       531/531
(100 %)
0 diff
(100 %id)
BF907148 uterus_tumor .c 5212 to 5469 1 to 259       259/259
(100 %)
9 diff
(96.6 %id)
TI_149282930   .c 5212 to 5691 7 to 487   AAA Submitted on the opposite strand 481/840
(57 %)
8 diff
(99.1 %id)
AA581397 bulk tumor, colon .c 5213 to 5737 543 to 15   AAA   529/530
(99 %)
29 diff
(94.6 %id)
DB376361 placenta .c 5213 to 5775 554 to 1       554/593
(93 %)
18 diff
(97.0 %id)
AU153567   .c 5214 to 5775 558 to 1       558/565
(98 %)
21 diff
(96.3 %id)
BF439362 pooled .c 5215 to 5737 533 to 11   AAA   523/523
(100 %)
1 diff
(99.9 %id)
AI952030 lung, two pooled squamous cell carcinomas .c 5241 to 5740 508 to 9       500/508
(98 %)
0 diff
(100 %id)
BF434785 Kidney .c 5242 to 5775 536 to 2       535/536
(99 %)
0 diff
(100 %id)
AW205730   .c 5251 to 5775 542 to 18   AAA   525/525
(100 %)
0 diff
(100 %id)
TI_149272919   .c 5254 to 5776 119 to 644     Submitted on the opposite strand 526/1119
(47 %)
38 diff
(96.7 %id)
DB543310 hippocampus .c 5258 to 5733 1 to 476     Submitted on the opposite strand 476/476
(100 %)
3 diff
(99.4 %id)
BU675412 lung, Primary Lung Epithelial Cells .c 5260 to 5679 1 to 426     Submitted on the opposite strand 426/426
(100 %)
16 diff
(96.3 %id)
AI373377 Kidney .c 5264 to 5739 478 to 3       476/478
(99 %)
0 diff
(100 %id)
AA633694   .c 5277 to 5740 468 to 4       465/477
(97 %)
0 diff
(100 %id)
BP386262 pancreatic islet .c 5281 to 5775 1 to 496     Submitted on the opposite strand 496/500
(99 %)
3 diff
(99.4 %id)
BM998166 lung, Metastatic Chondrosarcoma .c 5281 to 5775 513 to 19   AAA   495/495
(100 %)
0 diff
(100 %id)
AW008377 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 5282 to 5737 457 to 1       457/457
(100 %)
2 diff
(99.6 %id)
AA758805   .c 5287 to 5739 455 to 4       452/455
(99 %)
0 diff
(100 %id)
AI627309 Kidney .c 5296 to 5775 481 to 2       480/481
(99 %)
0 diff
(100 %id)
AI148838 placenta .c 5305 to 5775 479 to 9       471/479
(98 %)
0 diff
(100 %id)
BE349309 malignant melanoma, metastatic to lymphnode, skin .c 5306 to 5777 472 to 1   tiling clone,   472/472
(100 %)
0 diff
(100 %id)
AI921601 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 5307 to 5776 471 to 2       470/471
(99 %)
0 diff
(100 %id)
BE552171 Kidney .c 5307 to 5737 449 to 19   AAA   431/431
(100 %)
3 diff
(99.4 %id)
AW439323 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 5309 to 5738 430 to 1       430/430
(100 %)
2 diff
(99.6 %id)
BG484138 lung .c 5311 to 5744 1 to 437       437/696
(62 %)
10 diff
(98.6 %id)
AA458868 ovarian tumor, ovary .c 5313 to 5737 425 to 1       425/425
(100 %)
3 diff
(99.3 %id)
FN145288 breast carcinoma .c 5321 to 5406 1 to 88       88/89
(98 %)
3 diff
(96.7 %id)
D56766   .c 5322 to 5615 1 to 295       295/295
(100 %)
4 diff
(98.7 %id)
BF448002 sympathetic trunk .c 5326 to 5740 416 to 2       415/416
(99 %)
0 diff
(100 %id)
EC535103 Prostate .c 5335 to 5457 1 to 119       119/119
(100 %)
7 diff
(94.2 %id)
D58150   .c 5335 to 5590 15 to 267       253/267
(94 %)
6 diff
(97.8 %id)
D57381   .c 5336 to 5775 1 to 439       439/439
(100 %)
4 diff
(99.1 %id)
BG236466 blood, lymphocyte .c 5336 to 5775 442 to 3       440/442
(99 %)
0 diff
(100 %id)
D51225   .c 5341 to 5741 399 to 1       399/399
(100 %)
4 diff
(99.0 %id)
DB532838 hippocampus .c 5342 to 5778 1 to 437     Submitted on the opposite strand 437/441
(99 %)
2 diff
(99.6 %id)
AW191614 Pancreas, pancreatic islets .c 5348 to 5724 1 to 380       380/402
(94 %)
4 diff
(99.1 %id)
R28016 placenta .c 5350 to 5737 408 to 1       408/418
(97 %)
29 diff
(93.1 %id)
D56791   .c 5360 to 5588 1 to 228       228/228
(100 %)
6 diff
(97.4 %id)
AI368861 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 5364 to 5775 414 to 3       412/414
(99 %)
0 diff
(100 %id)
BE221733 Kidney .c 5370 to 5737 385 to 20   AAA   366/366
(100 %)
5 diff
(98.7 %id)
R32140 placenta .c 5371 to 5774 414 to 1   fully sequenced,   414/414
(100 %)
12 diff
(97.2 %id)
N27131 melanocyte .c 5371 to 5775 410 to 3       408/415
(98 %)
0 diff
(100 %id)
AA789167   .c 5371 to 5737 367 to 1       367/367
(100 %)
3 diff
(99.2 %id)
CN271568 embryonic stem cells, DMSO-treated H9 cellline .c 5374 to 5775 1 to 402       402/406
(99 %)
2 diff
(99.6 %id)
N67817 melanocyte .c 5375 to 5777 410 to 6       405/410
(98 %)
0 diff
(100 %id)
AA283650.
matches multiple genes
germinal center B cell .c 5391 to 5775 386 to 1     also hits gene jarseybu 386/386
(100 %)
3 diff
(99.3 %id)
D57825   .c 5392 to 5748 1 to 355       355/355
(100 %)
3 diff
(99.2 %id)
H12583 placenta .c 5392 to 5731 1 to 344   fully sequenced,   344/344
(100 %)
7 diff
(98.0 %id)
AA151112 uterus .c 5394 to 5733 341 to 1       341/342
(99 %)
3 diff
(99.2 %id)
AA283667 germinal center B cell .c 5416 to 5775 361 to 1       361/361
(100 %)
2 diff
(99.5 %id)
R62153 placenta .c 5430 to 5748 323 to 1       323/328
(98 %)
5 diff
(98.5 %id)
Z33440   .c 5432 to 5775 344 to 1       344/344
(100 %)
3 diff
(99.2 %id)
D58155   .c 5435 to 5707 1 to 273       273/273
(100 %)
9 diff
(96.8 %id)
AJ711685 heart .c 5445 to 5739 333 to 39     Submitted on the opposite strand 295/340
(86 %)
0 diff
(100 %id)
R81512 placenta .c 5449 to 5762 327 to 2       326/330
(98 %)
0 diff
(100 %id)
BM841538 lymph node, stomach .c 5450 to 5775 1 to 319   AAA   319/319
(100 %)
4 diff
(98.8 %id)
AI583719 pooled germ cell tumors .c 5455 to 5739 285 to 1       285/285
(100 %)
0 diff
(100 %id)
D56704   .c 5480 to 5775 1 to 296       296/298
(99 %)
1 diff
(99.7 %id)
R70031 placenta .c 5499 to 5766 269 to 2       268/269
(99 %)
0 diff
(100 %id)
R28493 placenta .c 5521 to 5737 220 to 1       220/220
(100 %)
4 diff
(98.2 %id)
H12584 placenta .c 5544 to 5733 196 to 1   fully sequenced,   196/196
(100 %)
0 diff
(100 %id)
AA835464 Spleen .c 5621 to 5782 162 to 1   tiling clone,   162/162
(100 %)
0 diff
(100 %id)
GD142409   .c 5707 to 5777 1 to 71   AAA   71/71
(100 %)
1 diff
(98.6 %id)
AB209115 brain .d 1 to 4675 1 to 4639   tiling clone,   4634/4639
(99 %)
2 diff
(100.0 %id)
DA232742 brain .d 1057 to 1618 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
AK126990 brain .d 1072 to 4637 1 to 3531   tiling clone, available from FLJ,   3526/3531
(99 %)
5 diff
(99.9 %id)
DA227471 brain .d 1073 to 1631 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
BU071880 insulinoma, Pancreas .d 2842 to 3441 8 to 607   tiling clone,   600/607
(98 %)
7 diff
(98.9 %id)
BU077841 insulinoma, Pancreas .d 2842 to 3375 8 to 539       532/539
(98 %)
22 diff
(96.0 %id)
BU077640 insulinoma, Pancreas .d 4035 to 4641 626 to 20   tiling clone, AAA   607/607
(100 %)
2 diff
(99.7 %id)
BU073399 insulinoma, Pancreas .d 4082 to 4641 579 to 20   tiling clone, AAA   560/560
(100 %)
1 diff
(99.9 %id)
BM825312 Ascites, stomach .e 1 to 702 1 to 702   tiling clone,   702/702
(100 %)
2 diff
(99.8 %id)
AW591116 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .e 346 to 723 378 to 1   tiling clone,   378/378
(100 %)
1 diff
(99.8 %id)
BE079657 breast .e 713 to 1224 12 to 523   tiling clone,   512/523
(97 %)
6 diff
(98.9 %id)
BG386131 adenocarcinoma cell line, colon .e 820 to 1597 1 to 772   tiling clone,   772/920
(83 %)
25 diff
(97.3 %id)
AW770860 colon, juvenile granulosa tumor .e 1441 to 1812 372 to 1   tiling clone,   372/372
(100 %)
1 diff
(99.8 %id)
CX781451 human embryonic stem cells .e 1581 to 2356 1 to 775   tiling clone,   775/775
(100 %)
8 diff
(99.0 %id)
DB066280 testis .f 1 to 530 2 to 531   tiling clone, capped   530/530
(100 %)
1 diff
(99.9 %id)
BC047895 Brain, adult medulla .f 21 to 1473 1 to 1453 N429K T430K tiling clone, available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1453/1508
(96 %)
4 diff
(99.8 %id)
BM553944 brain, medulla .f 21 to 1035 20 to 1042   available from MGC,   1023/1042
(98 %)
31 diff
(97.1 %id)
DB061036 testis .f 23 to 567 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DB076988 testis .f 38 to 583 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DB077669 testis .f 38 to 603 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DB086838 testis .f 45 to 602 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
BI827512 brain, medulla .f 55 to 838 1 to 813   available from MGC,   750/813
(92 %)
43 diff
(94.8 %id)
TI_57171827   .f 55 to 838 28 to 840       708/840
(84 %)
41 diff
(95.2 %id)
DB012152 esophageal, tumor tissue .g 1 to 570 2 to 571   tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
DB236368 trachea .g 147 to 704 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
BC039081 Brain, adult medulla .g 169 to 1825 1 to 1657 exact tiling clone, available from MGC, AAA   1657/1657
(100 %)
0 diff
(100 %id)
TI_1948228687   .g 271 to 714 133 to 577   fully sequenced,   445/577
(77 %)
6 diff
(99.0 %id)
TI_1948228688   .g 684 to 1327 777 to 123   fully sequenced,   655/777
(84 %)
1 diff
(99.9 %id)
AA431535   .h 1 to 501 1 to 500   tiling clone,   500/500
(100 %)
6 diff
(98.8 %id)
AA431211   .h 838 to 1377 548 to 14   tiling clone, AAA   535/535
(100 %)
18 diff
(96.7 %id)
DA509454 brain .i 1 to 553 2 to 554   tiling clone, capped   553/553
(100 %)
1 diff
(99.9 %id)
DA749517   .i 16 to 592 2 to 578   tiling clone, capped   577/577
(100 %)
0 diff
(100 %id)
DA795312 brain .i 60 to 549 2 to 492   capped   491/491
(100 %)
1 diff
(99.8 %id)
DA632400 Kidney .i 80 to 637 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
TI_1948228394   .i 316 to 1275 1088 to 124   tiling clone,   965/1240
(77 %)
33 diff
(97.4 %id)
TI_1948228988   .i 367 to 1275 1045 to 124       922/1259
(73 %)
29 diff
(97.7 %id)
TI_1948229293   .i 370 to 1275 1048 to 124       925/1256
(73 %)
36 diff
(97.2 %id)
AA868722 pooled .i 695 to 1469 793 to 21   tiling clone, AAA   773/773
(100 %)
41 diff
(94.7 %id)
AI654225 pooled germ cell tumors .i 1156 to 1469 334 to 21   AAA   314/314
(100 %)
0 diff
(100 %id)
AW027461 pooled germ cell tumors .i 1165 to 1469 325 to 21   AAA   305/314
(97 %)
5 diff
(98.5 %id)
CN271565 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .j 1 to 720 1 to 719 E13R K14R T15L E16R T17L ... tiling clone,   719/719
(100 %)
2 diff
(99.8 %id)
CR995552 T-Lymphocytes .j 370 to 1310 1 to 939   tiling clone,   939/939
(100 %)
4 diff
(99.6 %id)
BE832471 marrow .j 699 to 891 204 to 14       191/204
(93 %)
0 diff
(100 %id)
BP318600 pericardium .k 1 to 587 1 to 587   tiling clone,   587/587
(100 %)
1 diff
(99.9 %id)
BF934386 nervous_tumor .k 391 to 759 1 to 369   tiling clone,   369/369
(100 %)
1 diff
(99.8 %id)
TI_151732194   .l 1 to 524 594 to 72 E3G E4R N5T S6V G7A ... tiling clone, AAA   523/899
(58 %)
6 diff
(99.4 %id)
BQ188354 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .l 10 to 524 1 to 515   tiling clone, fully sequenced, AAA   515/515
(100 %)
0 diff
(100 %id)
CK299834 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .l 384 to 524 159 to 19   fully sequenced, AAA   141/141
(100 %)
0 diff
(100 %id)
DA168282 amygdala .m 1 to 567 2 to 569   tiling clone, capped   568/568
(100 %)
11 diff
(98.1 %id)
CX752348 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .m 25 to 765 1 to 744   tiling clone, Submitted on the opposite strand 744/744
(100 %)
6 diff
(99.2 %id)
BX500649 Liver .m 159 to 823 1 to 666   tiling clone,   666/666
(100 %)
7 diff
(99.0 %id)
CN271570 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .m 493 to 1259 1 to 767 exact tiling clone,   767/767
(100 %)
0 diff
(100 %id)
DA465057   .m 564 to 1132 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
BP226144   .m 787 to 1368 1 to 582 exact     582/582
(100 %)
0 diff
(100 %id)
BP326006 prostata .m 849 to 1409 1 to 561   tiling clone,   561/561
(100 %)
2 diff
(99.7 %id)
DB302499 amygdala .m 2092 to 2658 569 to 1   tiling clone,   569/569
(100 %)
2 diff
(99.7 %id)
DA523393 brain .n 1 to 549 3 to 557 I118Q D119M F120I L121D N122F ... tiling clone, capped   551/556
(99 %)
1 diff
(99.9 %id)
BP313153 mammary gland .o 1 to 582 1 to 582   tiling clone,   582/582
(100 %)
0 diff
(100 %id)
AL596826 human spinal cord .o 24 to 665 23 to 664 V91G tiling clone,   642/664
(96 %)
7 diff
(99.0 %id)
AW242483 Kidney .o 32 to 440 409 to 1       409/409
(100 %)
2 diff
(99.6 %id)
BM007806 Spleen .p-u 1 to 684 1 to 687 exact tiling clone,   687/687
(100 %)
11 diff
(98.4 %id)
TI_59383040   .p-u 2 to 684 56 to 741 exact     686/686
(100 %)
10 diff
(98.6 %id)
CV379085 head_neck .p-u 373 to 549 15 to 191   tiling clone,   177/191
(92 %)
6 diff
(96.9 %id)
CV379099 head_neck .p-u 373 to 562 202 to 12   tiling clone, Submitted on the opposite strand 191/215
(88 %)
0 diff
(100 %id)
N57040 placenta .q 1 to 413 1 to 419 K73X R74X Q75A L76A S77Q ... tiling clone,   419/419
(100 %)
6 diff
(98.6 %id)
DA392166 thalamus .r 1 to 594 2 to 595 exact tiling clone, capped   594/594
(100 %)
0 diff
(100 %id)
DA767721 tongue .r 7 to 577 2 to 573 exact capped   572/573
(99 %)
3 diff
(99.5 %id)
DA855500 placenta .r 55 to 585 2 to 532 exact capped   531/531
(100 %)
0 diff
(100 %id)
DA858220 placenta .r 63 to 598 2 to 537   tiling clone, capped   536/536
(100 %)
1 diff
(99.9 %id)
AF045652 muscle .s 1 to 150 1 to 150 Q30H tiling clone,   150/150
(100 %)
1 diff
(99.4 %id)
AK123769   .t 1 to 2018 1 to 2017   tiling clone, available from FLJ,   2017/2017
(100 %)
8 diff
(99.7 %id)
DA613600   .t 1 to 572 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
FN159759 breast carcinoma .t 1181 to 1286 1 to 105       105/105
(100 %)
2 diff
(98.1 %id)
DB320139   .t 1461 to 2018 559 to 1       559/559
(100 %)
3 diff
(99.5 %id)
CB046313 2 pooled tumors (clear cell type), Kidney .t 1510 to 2045 549 to 14   tiling clone,   536/549
(97 %)
0 diff
(100 %id)
AI824865 pooled germ cell tumors .t 1731 to 2027 297 to 1       297/297
(100 %)
0 diff
(100 %id)
AW237150 pooled germ cell tumors .t 1731 to 2027 297 to 1       297/297
(100 %)
0 diff
(100 %id)
AI090487 heart .t 1770 to 2248 493 to 15   tiling clone, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 479/479
(100 %)
2 diff
(99.6 %id)
BQ025181 placenta .t 2197 to 2752 574 to 19 exact tiling clone, AAA Possibly primed on the genome, locally A rich (10/11 A in genome downstream of last aligned base) 556/564
(98 %)
0 diff
(100 %id)
DA122381 cerebellum .u-u 1 to 558 2 to 559 exact tiling clone, to resequence, capped   558/558
(100 %)
1 diff
(99.9 %id)
DA122454 cerebellum .u-u 1 to 542 2 to 543 exact capped   542/542
(100 %)
1 diff
(99.9 %id)
DA228252 brain .u-u 1248 to 1754 2 to 508   tiling clone, capped   507/507
(100 %)
1 diff
(99.9 %id)
FN111245 breast carcinoma .u-u 1562 to 1648 1 to 82       82/82
(100 %)
8 diff
(90.3 %id)
BU076192 Pancreas, Purified pancreatic islet .u-u 1761 to 2353 593 to 1   tiling clone,   593/593
(100 %)
2 diff
(99.7 %id)
DB300565 cerebellum .u-u 1803 to 2353 552 to 1   to resequence,   552/559
(98 %)
10 diff
(98.3 %id)
AA976356 2 pooled tumors (clear cell type), Kidney .u-u 1916 to 2356 441 to 1   tiling clone,   441/441
(100 %)
1 diff
(99.8 %id)
AI682848 adenocarcinoma, Pancreas .u-u 1950 to 2353 406 to 1       406/406
(100 %)
6 diff
(98.6 %id)
AA458617 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .u-u 1988 to 2335 1 to 347       347/347
(100 %)
5 diff
(98.6 %id)
BF431741 pooled .u-u 1989 to 2356 368 to 1       368/368
(100 %)
0 diff
(100 %id)
AA455355 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .u-u 2119 to 2353 235 to 1       235/235
(100 %)
4 diff
(98.3 %id)
DA114270 cerebellum .va-u 25 to 576 2 to 552   tiling clone, capped   551/551
(100 %)
2 diff
(99.7 %id)
BF086727 placenta_normal .va-u 84 to 547 474 to 14       461/474
(97 %)
0 diff
(100 %id)
BF086716 placenta_normal .va-u 118 to 546 440 to 14       427/440
(97 %)
0 diff
(100 %id)
BF086721 placenta_normal .va-u 120 to 546 434 to 9   tiling clone,   426/434
(98 %)
0 diff
(100 %id)
BQ366184 placenta_normal .va-u 129 to 531 411 to 3       409/411
(99 %)
0 diff
(100 %id)
BF086726 placenta_normal .va-u 219 to 548 338 to 9       330/338
(97 %)
0 diff
(100 %id)
BF986072 placenta_normal .va-u 244 to 302 270 to 328       284/328
(86 %)
11 diff
(96.7 %id)
BF985951 placenta_normal .va-u 294 to 538 260 to 1       260/263
(98 %)
23 diff
(91.3 %id)
BF985963 placenta_normal .va-u 307 to 546 251 to 11       241/251
(96 %)
0 diff
(100 %id)
AI628936 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .va-u 556 to 964 1 to 409 exact tiling clone, Submitted on the opposite strand 409/409
(100 %)
0 diff
(100 %id)
AW820373 stomach .vb-u 1 to 364 1 to 363   tiling clone,   363/369
(98 %)
5 diff
(98.7 %id)
AV646756 corresponding non cancerous liver tissue .vb-u 144 to 518 1 to 375 R3T A12T S13Y V18E S23C ...   Submitted on the opposite strand 375/375
(100 %)
14 diff
(96.3 %id)
F00810 leg muscle, skeletal muscle .vb-u 162 to 490 334 to 1 I2X R3Q R4E N5X S6T ...     334/339
(98 %)
11 diff
(96.8 %id)
BG995244 head_neck .vb-u 216 to 601 16 to 402       387/402
(96 %)
6 diff
(98.6 %id)
BE159591 head_neck .vb-u 219 to 459 283 to 41     Submitted on the opposite strand 243/284
(85 %)
0 diff
(100 %id)
BF350345 head_neck .vb-u 228 to 503 8 to 284       277/298
(92 %)
11 diff
(96.4 %id)
FN086473 breast carcinoma .vb-u 253 to 332 78 to 1     Submitted on the opposite strand 78/85
(91 %)
2 diff
(97.7 %id)
BF856824 prostate_tumor .vb-u 256 to 744 8 to 494   tiling clone,   487/494
(98 %)
6 diff
(98.8 %id)
BE931556 head_neck .vb-u 284 to 565 1 to 290       290/290
(100 %)
11 diff
(96.3 %id)
BE005800 breast_normal .vb-u 326 to 736 1 to 409       409/409
(100 %)
4 diff
(99.1 %id)
BE005791 breast_normal .vb-u 334 to 741 407 to 1     Submitted on the opposite strand 407/407
(100 %)
2 diff
(99.6 %id)
AA337316 endometrium .vb-u 424 to 741 1 to 319       319/319
(100 %)
1 diff
(99.7 %id)
BE172626 head_neck .vb-u 551 to 684 137 to 6     Submitted on the opposite strand 132/137
(96 %)
0 diff
(100 %id)
BE162001 head_neck .vb-u 556 to 668 1 to 111       111/111
(100 %)
4 diff
(96.4 %id)
AL603324 human skeletal muscle .vc 1 to 743 1 to 744 exact tiling clone,   744/744
(100 %)
2 diff
(99.8 %id)
BE929781 placenta_normal .vd-u 1 to 540 565 to 30 exact tiling clone,   536/565
(94 %)
0 diff
(100 %id)
BF997764 placenta_normal .vd-u 290 to 567 1 to 277   tiling clone,   277/533
(51 %)
10 diff
(98.2 %id)
DA375182 thalamus .ve 1 to 559 2 to 560 exact tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
DB508898.
matches multiple genes
testis .vf-u 1 to 447 448 to 1 D10E Q16H V18C S19F G20W ... tiling clone, also hits gene jerfy 448/448
(100 %)
8 diff
(98.3 %id)
BF734842 bladder_tumor .vf-u 49 to 344 1 to 294   tiling clone,   294/294
(100 %)
13 diff
(95.6 %id)
AW377913 head_neck .vg-u 1 to 375 1 to 377 V6G L7A R8Q E10R N11K ... tiling clone,   377/377
(100 %)
10 diff
(97.4 %id)
AW377918 head_neck .vg-u 10 to 409 8 to 408 S16V H18A S19F V20S V21C ... tiling clone,   401/408
(98 %)
6 diff
(98.6 %id)
BF094255 uterus_tumor .vh-u 1 to 142 1 to 141   tiling clone,   141/141
(100 %)
3 diff
(97.9 %id)
DA433364 tongue, tumor tissue Gene CLIP1, variant not shown       capped This clone was ignored    
R07616 liver and spleen Gene CLIP1, variant not shown         This clone was ignored    
R07659 liver and spleen Gene CLIP1, variant not shown         This clone was ignored    
BG028876.
matches multiple genes
Bone, osteosarcoma, cell line Gene shyswaw, variant not shown         This clone was ignored, also hits gene shyswaw    
BG028876.
matches multiple genes
Bone, osteosarcoma, cell line Gene CLIP1, variant not shown         This clone was ignored, also hits gene shyswaw    
CV571767 cornea, eye Gene CLIP1, variant not shown         This clone was ignored    
DB219993 trachea Gene CLIP1, variant not shown       capped This clone was ignored    
DB349361 trachea Gene CLIP1, variant not shown         This clone was ignored    
DB230646 trachea Gene CLIP1, variant not shown       capped This clone was ignored    
DB349984 trachea Gene CLIP1, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p-u, .q, .r, .s, .t, .u-u, .va-u, .vb-u, .vc, .vd-u, .ve, .vf-u, .vg-u, .vh-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI