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Gene RPL21andSNORD102andSNORA27TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
136 supporting clones for gene RPL21andSNORD102andSNORA27 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM555896 amelanotic melanoma, cell line, skin .a 1 to 634 1 to 634 K129X AAA   634/634
(100 %)
1 diff
(99.9 %id)
BM559809 amelanotic melanoma, cell line, skin .a 1 to 634 1 to 634 exact AAA   634/634
(100 %)
1 diff
(99.9 %id)
BM423766 amelanotic melanoma, cell line, skin .a 1 to 634 1 to 634 exact tiling clone, AAA   634/634
(100 %)
1 diff
(99.9 %id)
DB475574 hippocampus .b 1 to 461 2 to 462   tiling clone,   462/462
(100 %)
3 diff
(99.4 %id)
BG715198 brain, hypothalamus .b 1 to 806 1 to 801 E111D P132L A133L P134H P135Q ... AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 801/801
(100 %)
29 diff
(96.4 %id)
DB492066 hypothalamus .b 7 to 452 1 to 446       446/446
(100 %)
2 diff
(99.6 %id)
DB502174 hypothalamus .b 7 to 470 1 to 464       464/464
(100 %)
2 diff
(99.6 %id)
BF663139 B-cells, primary B-cells from tonsils (cell line) .b 21 to 793 1 to 765 K115N K129E P132L A133L P134H ... tiling clone,   765/808
(94 %)
16 diff
(98.1 %id)
BQ961905 epithelioid carcinoma cell line, Pancreas .b 28 to 776 1 to 749 W125X A160X tiling clone, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 749/749
(100 %)
5 diff
(99.4 %id)
BG252672 adenocarcinoma, cell line, Liver .b 63 to 775 1 to 721 E111D K120N E121R K122E G123R ...     721/780
(92 %)
13 diff
(98.4 %id)
TI_149281712   .b 116 to 811 797 to 102 A28V tiling clone,   696/797
(87 %)
6 diff
(99.3 %id)
AV740466 cord Blood .c 1 to 408 47 to 455   tiling clone,   409/466
(87 %)
8 diff
(98.3 %id)
BF240839 bone marrow, from acute myelogenous leukemia .c 9 to 606 1 to 600 L27C A28G T29H Y30I M31Y ... tiling clone, AAA   600/606
(99 %)
19 diff
(96.9 %id)
CN265212 embryonic stem cells, cell lines H1, H7, andH9 .c 16 to 199 1 to 184       184/184
(100 %)
3 diff
(98.4 %id)
BX332723 Neuroblastoma Cot 25-normalized .c 165 to 483 971 to 660   tiling clone,   971/977
(99 %)
9 diff
(99.1 %id)
DW409714 Liver .d 1 to 328 9 to 337       329/337
(97 %)
9 diff
(97.4 %id)
BG776769 lung, mucoepidermoid carcinoma .d 4 to 685 1 to 686   tiling clone,   686/923
(74 %)
15 diff
(98.4 %id)
BG702191 brain, hippocampus .d 16 to 762 6 to 751       746/751
(99 %)
17 diff
(97.8 %id)
BM562823 duodenal adenocarcinoma, cell line, small intestine .d 18 to 814 1 to 797 D41H N66H N77D K78E K87Q ... AAA   797/797
(100 %)
28 diff
(96.5 %id)
CD050861 embryonic trophoblasts, made from WA01 stemcells .d 28 to 813 23 to 808 exact tiling clone, AAA   786/808
(97 %)
6 diff
(99.3 %id)
BM795221 stomach .d 28 to 631 1 to 604       604/604
(100 %)
0 diff
(100 %id)
BM852454 stomach .d 28 to 437 1 to 410       410/410
(100 %)
0 diff
(100 %id)
AV658594 corresponding non cancerous liver tissue .d 30 to 438 1 to 409     Submitted on the opposite strand 409/409
(100 %)
1 diff
(99.8 %id)
CD177010 embryonic trophoblasts, made from WA01 stemcells .d 31 to 811 6 to 786 exact AAA   781/786
(99 %)
6 diff
(99.3 %id)
BG395577 eye, retinoblastoma .d 33 to 379 1 to 350       350/484
(72 %)
12 diff
(97.6 %id)
BG396252 eye, retinoblastoma .d 33 to 696 1 to 663       663/663
(100 %)
2 diff
(99.7 %id)
BG396765 eye, retinoblastoma .d 33 to 802 1 to 772 G123V T124P W125G V126G Q127F ...     772/868
(88 %)
23 diff
(97.4 %id)
CB985457 Pooled-Glandular .d 41 to 632 1 to 591       591/593
(99 %)
5 diff
(99.2 %id)
BQ685878 ductal carcinoma, cell line, Pancreas .d 43 to 815 1 to 778 K146E E147G P148A E149* AAA   778/778
(100 %)
13 diff
(98.4 %id)
BE536276 cervix .d 48 to 526 1 to 478       478/498
(95 %)
11 diff
(97.8 %id)
BF211994 bone marrow, from chronic myelogenous leukemia .d 48 to 643 1 to 586   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 586/588
(99 %)
26 diff
(95.6 %id)
TI_59386289   .d 52 to 763 225 to 935       711/1058
(67 %)
21 diff
(98.1 %id)
BG437154 large cell carcinoma, lung .d 54 to 672 1 to 621       621/622
(99 %)
10 diff
(98.4 %id)
CN269531 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 56 to 757 1 to 704       704/704
(100 %)
2 diff
(99.8 %id)
AV757948 bone marrow .d 59 to 487 73 to 494       422/441
(95 %)
14 diff
(96.9 %id)
BF796911 lymph, lymphoma, cell line .d 59 to 804 1 to 749 I89T N90*     749/750
(99 %)
17 diff
(97.8 %id)
BM040914 Kidney, Wilms' tumor, cell line .d 60 to 668 1 to 616       616/616
(100 %)
12 diff
(98.1 %id)
BF027017 melanotic melanoma, skin .d 62 to 798 1 to 738 V25F P26L L27G A28H T29I ...     738/960
(76 %)
24 diff
(97.5 %id)
AA312438   .d 65 to 387 1 to 324       324/324
(100 %)
10 diff
(97.0 %id)
BG774396 choriocarcinoma, placenta .d 67 to 761 1 to 695       695/695
(100 %)
1 diff
(99.9 %id)
AW958675   .d 72 to 682 8 to 617       610/644
(94 %)
22 diff
(96.6 %id)
BG519552 brain, neuroblastoma .d 72 to 794 1 to 728 N112Q D113*     728/834
(87 %)
14 diff
(98.4 %id)
BI199465 brain, neuroblastoma .d 72 to 685 1 to 617       617/863
(71 %)
14 diff
(98.4 %id)
BF316048 brain, neuroblastoma .d 73 to 781 1 to 705 V25F P26L L27G A28H T29I ... AAA   705/734
(96 %)
12 diff
(98.4 %id)
BM823304 Ascites, stomach .d 73 to 578 1 to 506       506/506
(100 %)
0 diff
(100 %id)
BF171380 blood .d 75 to 360 1 to 287       287/315
(91 %)
17 diff
(94.7 %id)
C18654 placenta .d 78 to 422 1 to 343       343/343
(100 %)
5 diff
(98.6 %id)
BF971634 leiomyosarcoma cell line, uterus .d 81 to 816 1 to 736 R136E E137K A138H H139T F140L ...     736/935
(78 %)
14 diff
(98.6 %id)
BE262180 brain, neuroblastoma .d 93 to 601 1 to 510       510/510
(100 %)
4 diff
(99.3 %id)
CN269539 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 104 to 496 1 to 393       393/393
(100 %)
0 diff
(100 %id)
AV704351 adrenal gland .d 163 to 813 1 to 651 V72R V76G K115X I154Y P155S ... AAA   651/651
(100 %)
10 diff
(98.5 %id)
BI195056 brain, neuroblastoma .d 163 to 818 1 to 659 H98A S99L K100*     659/732
(90 %)
22 diff
(97.0 %id)
BG529007 adenocarcinoma, Prostate .d 242 to 802 1 to 563 K115N K117E E118R A119S K120Q ...     563/565
(99 %)
10 diff
(98.3 %id)
BU933374 mixed (pool of 40 RNAs) .d 247 to 816 1 to 569 exact AAA   569/569
(100 %)
5 diff
(99.2 %id)
BG503903 embryonal carcinoma, testis .d 248 to 816 1 to 568 G59X K60Q T61N G62W R63K ... AAA   568/568
(100 %)
5 diff
(99.2 %id)
BG503069 embryonal carcinoma, testis .d 248 to 816 1 to 570 exact AAA   570/570
(100 %)
8 diff
(98.6 %id)
BG504865 embryonal carcinoma, testis .d 248 to 815 1 to 569 K116Q K117E E118R A119S K120Q ...     569/856
(66 %)
9 diff
(99.0 %id)
BG504382 embryonal carcinoma, testis .d 248 to 816 1 to 567 exact AAA   567/567
(100 %)
4 diff
(99.3 %id)
BG504398 embryonal carcinoma, testis .d 248 to 816 1 to 567 exact AAA   567/567
(100 %)
4 diff
(99.3 %id)
BG531087 embryonal carcinoma, testis .d 248 to 818 1 to 566 V25F P26L L27G A28H T29I ...     566/652
(86 %)
8 diff
(98.8 %id)
BG506233 embryonal carcinoma, testis .d 249 to 813 1 to 564 R88S K116T K117E E118R A119S ... AAA   564/564
(100 %)
7 diff
(98.8 %id)
BM171944 embryonal carcinoma, testis .d 249 to 813 1 to 565 F15A S16*     565/565
(100 %)
13 diff
(97.7 %id)
BP204818 coronary artery .d 253 to 818 1 to 565 G44V E111D AAA   565/565
(100 %)
10 diff
(98.3 %id)
DA737641.
matches multiple genes
  .d 255 to 813 2 to 560 exact fully sequenced, capped also hits gene RPL21P16 559/559
(100 %)
0 diff
(100 %id)
DA734036.
matches multiple genes
  .d 263 to 813 2 to 552 R20X S99P fully sequenced, capped also hits gene RPL21P16 551/551
(100 %)
4 diff
(99.3 %id)
BX340779.
matches multiple genes
  .d 264 to 813 1 to 548 K81X I89X P132L A133L P134H ... AAA also hits gene RPL21P119 548/548
(100 %)
4 diff
(99.3 %id)
BG327378 Kidney, renal cell adenocarcinoma .d 266 to 813 1 to 547 V25F P26L L27G A28H T29I ... AAA   547/547
(100 %)
4 diff
(99.3 %id)
AA188054   .d 270 to 814 1 to 543 Q114P K115E K117E E118R A119S ... fully sequenced,   545/545
(100 %)
14 diff
(97.5 %id)
BM694484 eye, RPE and Choroid .d 270 to 813 1 to 544 exact fully sequenced, AAA   544/544
(100 %)
0 diff
(100 %id)
AA156225.
matches multiple genes
  .d 271 to 813 1 to 535 P132L A133L P134H R136E E137K ... fully sequenced, also hits gene RPL21P16 535/535
(100 %)
9 diff
(98.4 %id)
BU948490.
matches multiple genes
insulinoma, Pancreas .d 294 to 817 1 to 524   fully sequenced, also hits gene RPL21P16 524/524
(100 %)
5 diff
(99.1 %id)
CA941895.
matches multiple genes
Pancreas, Purified pancreatic islet .d 296 to 815 520 to 1     Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base), also hits gene RPL21P16 520/520
(100 %)
0 diff
(100 %id)
CA942715.
matches multiple genes
Pancreas, Purified pancreatic islet .d 296 to 812 517 to 1     Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base), also hits gene RPL21P16 517/517
(100 %)
0 diff
(100 %id)
BU731103 eye, RPE and Choroid .d 391 to 813 441 to 19   fully sequenced, AAA   423/423
(100 %)
0 diff
(100 %id)
BM510464.
matches multiple genes
insulinoma, Pancreas .d 395 to 813 437 to 19   AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base), also hits gene RPL21P16 419/419
(100 %)
0 diff
(100 %id)
BU786110.
matches multiple genes
insulinoma, Pancreas .d 395 to 813 437 to 19   AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base), also hits gene RPL21P16 419/419
(100 %)
0 diff
(100 %id)
BQ130608.
matches multiple genes
insulinoma, Pancreas .d 397 to 813 433 to 17   AAA also hits gene RPL21P119 417/423
(98 %)
0 diff
(100 %id)
AA075657.
matches multiple genes
  .d 417 to 811 1 to 396     also hits gene RPL21P53 396/397
(99 %)
3 diff
(99.3 %id)
AA126639 lung, lung carcinoma .d 422 to 815 1 to 393   fully sequenced,   393/393
(100 %)
3 diff
(99.3 %id)
AA181991   .d 441 to 815 375 to 1   fully sequenced,   375/375
(100 %)
0 diff
(100 %id)
AA155996.
matches multiple genes
  .d 442 to 816 375 to 1   fully sequenced, also hits gene RPL21P16 375/375
(100 %)
0 diff
(100 %id)
BM693276 eye, Retina Foveal and Macular .d 453 to 813 1 to 361   fully sequenced, AAA   361/361
(100 %)
0 diff
(100 %id)
DB370250.
matches multiple genes
  .d 504 to 813 310 to 1   fully sequenced, also hits gene RPL21P16 310/310
(100 %)
0 diff
(100 %id)
AA464743.
matches multiple genes
ovarian tumor, ovary .d 508 to 813 307 to 1     Submitted on the opposite strand, also hits gene MACC1 307/307
(100 %)
1 diff
(99.7 %id)
W38345.
matches multiple genes
Pancreas, pancreatic islet .d 522 to 816 295 to 1     also hits gene RPL21P16 295/295
(100 %)
0 diff
(100 %id)
N94631.
matches multiple genes
senescent fibroblast .d 533 to 818 289 to 1     Submitted on the opposite strand, also hits gene MACC1 289/349
(82 %)
6 diff
(98.3 %id)
AA402451   .d 536 to 813 1 to 278   fully sequenced, AAA   278/278
(100 %)
5 diff
(98.3 %id)
AA126560 lung, lung carcinoma .d 595 to 813 219 to 1   fully sequenced,   219/219
(100 %)
0 diff
(100 %id)
AA411855   .d 612 to 817 206 to 1   fully sequenced,   206/206
(100 %)
0 diff
(100 %id)
BM664121 eye, Retina Foveal and Macular .d 655 to 813 175 to 17   fully sequenced, AAA   159/159
(100 %)
0 diff
(100 %id)
BI496489.
matches multiple genes
cochlea, ear .d 751 to 813 83 to 19   AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base), also hits gene RPL21P119 65/65
(100 %)
1 diff
(98.5 %id)
DB056359 testis .e 1 to 493 2 to 494   tiling clone, capped   493/493
(100 %)
2 diff
(99.6 %id)
DB130300 thymus .e 2 to 568 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
DA145585 amygdala .e 6 to 582 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA892174 rectum .e 6 to 571 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB155204 thymus .e 6 to 599 2 to 595   tiling clone, capped   594/594
(100 %)
0 diff
(100 %id)
DA846837 placenta .e 8 to 530 2 to 524   capped   523/524
(99 %)
1 diff
(99.9 %id)
BX371212   .e 27 to 1046 1 to 1008   tiling clone,   1008/1012
(99 %)
10 diff
(99.1 %id)
CB269618 adipose .e 150 to 528 1 to 380       380/382
(99 %)
18 diff
(95.3 %id)
BX501727 Liver .e 266 to 731 1 to 468   tiling clone,   468/468
(100 %)
1 diff
(99.8 %id)
BQ720840 sympathetic trunk .e 532 to 1275 1 to 764       764/904
(84 %)
8 diff
(99.2 %id)
H53568 liver and spleen .e 693 to 1009 1 to 318     Submitted on the opposite strand 318/318
(100 %)
3 diff
(99.1 %id)
DW428374 Liver .e 822 to 1096 276 to 3   tiling clone,   274/276
(99 %)
0 diff
(100 %id)
CK004640 brain/CNS, Human Brain - Frontal Cortex .e 969 to 1604 1 to 637   tiling clone,   637/638
(99 %)
6 diff
(99.1 %id)
BE695870 colon .e 1209 to 1718 1 to 510       510/510
(100 %)
5 diff
(99.1 %id)
DW434598 Liver .e 1333 to 1573 17 to 258       242/258
(93 %)
7 diff
(97.3 %id)
DW437608 Liver .e 1333 to 1564 17 to 248       232/248
(93 %)
6 diff
(97.6 %id)
BM927538 lymph, lymphoma, cell line .e 1356 to 1871 9 to 524 exact tiling clone, AAA Possibly primed on the genome, locally A rich (11/11 A in genome downstream of last aligned base) 516/516
(100 %)
1 diff
(99.9 %id)
CN331968 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .f 1 to 524 527 to 1 exact tiling clone, Submitted on the opposite strand 527/527
(100 %)
3 diff
(99.5 %id)
TI_149301223   .f 62 to 552 587 to 96 exact AAA   492/908
(54 %)
1 diff
(99.9 %id)
BM977145 lung, Primary Lung Cystic Fibrosis EpithelialCells .f 62 to 552 508 to 17 exact tiling clone, AAA   492/559
(88 %)
1 diff
(99.9 %id)
BG428272 Kidney .g 1 to 640 1 to 642 Y13I M14Y F15V P18K F19Y ... tiling clone,   642/1030
(62 %)
20 diff
(98.1 %id)
BG111952 Bone, osteosarcoma, cell line .h 1 to 745 1 to 750   tiling clone,   750/988
(75 %)
16 diff
(98.4 %id)
BG529829 embryonal carcinoma, testis .h 248 to 1067 1 to 823   tiling clone,   823/870
(94 %)
8 diff
(99.1 %id)
BU732845 eye, Retina Foveal and Macular .h 904 to 1518 632 to 17 exact tiling clone, AAA   616/634
(97 %)
1 diff
(99.9 %id)
TI_151770856   .h 904 to 1502 106 to 705 A70G     600/1079
(55 %)
5 diff
(99.6 %id)
AV688050 hepatocellular carcinoma .h 933 to 1315 1 to 383       383/398
(96 %)
1 diff
(99.8 %id)
N86532   .h 972 to 1289 1 to 312       312/314
(99 %)
12 diff
(96.2 %id)
AW023966 cochlea, ear .h 995 to 1382 8 to 394       387/394
(98 %)
6 diff
(98.5 %id)
AI683619 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .h 1032 to 1519 488 to 1 exact tiling clone,   488/488
(100 %)
0 diff
(100 %id)
AL708062 human skeletal muscle .i-u 1 to 525 8 to 532 S14P tiling clone,   525/532
(98 %)
6 diff
(98.9 %id)
TI_57237200   .i-u 9 to 798 25 to 818 S14P E19D N20E R21P T22D ...     794/818
(97 %)
6 diff
(99.3 %id)
DA493583 brain .i-u 11 to 586 2 to 577 S14P capped   576/576
(100 %)
3 diff
(99.5 %id)
BI908531 leukocyte .i-u 16 to 798 1 to 787 S14P E19D N20E R21P T22D ... tiling clone,   787/787
(100 %)
20 diff
(97.5 %id)
DA654983   .i-u 21 to 589 2 to 571 S14P tiling clone, capped   570/570
(100 %)
4 diff
(99.3 %id)
CN281444 embryonic stem cells, cell lines H1, H7, andH9 .i-u 44 to 465 13 to 434 S14P     422/434
(97 %)
6 diff
(98.7 %id)
BM475399 eye, retinoblastoma .j 1 to 601 1 to 601 S14P tiling clone, AAA   601/601
(100 %)
5 diff
(99.2 %id)
DA919312 small intestine .k-u 1 to 558 2 to 560 exact tiling clone, capped   559/559
(100 %)
2 diff
(99.7 %id)
BM787317 stomach .l 1 to 551 1 to 549 exact tiling clone,   549/549
(100 %)
1 diff
(99.9 %id)
BG562835 Liver .m 1 to 456 1 to 456 exact tiling clone, AAA   456/456
(100 %)
3 diff
(99.4 %id)
BM550581 amelanotic melanoma, cell line, skin .m 4 to 510 1 to 507   tiling clone,   507/1156
(43 %)
9 diff
(99.3 %id)
EL952717 eyeball .n-u 1 to 449 1 to 451 F7L C8L Y9L I10Y V12C ... tiling clone,   451/451
(100 %)
6 diff
(98.7 %id)
BE047230 ovary, serous papillary tumor .n-u 6 to 454 449 to 1   tiling clone,   449/449
(100 %)
0 diff
(100 %id)
H89185 cochlea, ear .n-u 135 to 455 1 to 324   fully sequenced,   324/324
(100 %)
9 diff
(97.3 %id)
CK429402 eye, lacrimal gland .n-u 232 to 451 1 to 220   AAA   220/220
(100 %)
0 diff
(100 %id)
H88951 cochlea, ear .n-u 313 to 424 112 to 1   fully sequenced,   112/112
(100 %)
0 diff
(100 %id)
AI640377 adenocarcinoma, Pancreas .o 1 to 414 439 to 26 exact tiling clone, AAA   414/414
(100 %)
9 diff
(97.9 %id)
CR602527 T cells (Jurkat cell line) Cot10-normalized Gene RPL21andSNORD102andSNORA27, variant not shown         Suspected internal deletion, this clone was ignored    
BX383239   Gene RPL21andSNORD102andSNORA27, variant not shown         This clone was ignored    
BX503611.
matches multiple genes
  Gene RPL21andSNORD102andSNORA27, variant not shown       AAA Submitted on the opposite strand, submitted on the opposite strand, submitted on the opposite strand, also hits gene MACC1    
BX503611.
matches multiple genes
  Gene MACC1, variant not shown       AAA Submitted on the opposite strand, submitted on the opposite strand, submitted on the opposite strand, also hits gene MACC1    
BX503612.
matches multiple genes
  Gene RPL21andSNORD102andSNORA27, variant not shown         Submitted on the opposite strand, submitted on the opposite strand, submitted on the opposite strand, also hits gene MACC1    
BX503612.
matches multiple genes
  Gene MACC1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand, submitted on the opposite strand, also hits gene MACC1    
AV689762 hepatocellular carcinoma Gene RPL21andSNORD102andSNORA27, variant not shown         Suspected internal deletion, this clone was ignored    
AV658653 corresponding non cancerous liver tissue Gene RPL21andSNORD102andSNORA27, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
AV658657 corresponding non cancerous liver tissue Gene RPL21andSNORD102andSNORA27, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
DB147917 thymus Gene RPL21andSNORD102andSNORA27, variant not shown       capped This clone was ignored    
DB345882 thymus Gene RPL21andSNORD102andSNORA27, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j, .k-u, .l, .m, .n-u, .o Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI