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Gene RUNDC3BTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
74 supporting clones for gene RUNDC3B back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DC351844 brain .a 1 to 313 1 to 311   tiling clone,   311/311
(100 %)
1 diff
(99.7 %id)
AK055233 brain .a 45 to 2287 1 to 2241 exact tiling clone, available from FLJ,   2241/2241
(100 %)
1 diff
(100.0 %id)
NM_138290.2   .a 45 to 4145 1 to 4101 exact RefSeq,   4101/4101
(100 %)
0 diff
(100 %id)
DB199923 trachea .a 54 to 497 2 to 439   tiling clone, capped   438/438
(100 %)
5 diff
(98.9 %id)
DA367359 subthalamic nucleus .a 66 to 330 2 to 264   capped   263/263
(100 %)
5 diff
(98.1 %id)
DB485903 hypothalamus .a 86 to 534 1 to 443       443/443
(100 %)
9 diff
(98.0 %id)
DB485998 hypothalamus .a 86 to 515 1 to 423       423/423
(100 %)
7 diff
(98.4 %id)
DB495905 hypothalamus .a 94 to 574 1 to 481       481/481
(100 %)
8 diff
(98.4 %id)
NM_001134405.1   .b 1 to 4050 1 to 4050 exact RefSeq,   4050/4050
(100 %)
0 diff
(100 %id)
AK294039 cerebellum .b 203 to 2266 1 to 2062 F249L tiling clone,   2062/2062
(100 %)
2 diff
(100.0 %id)
BP194977 brain .b 822 to 1404 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BX452186 brain, fetal brain .b 960 to 1868 1 to 908   tiling clone,   908/924
(98 %)
12 diff
(98.8 %id)
W27450 eye, retina .b 962 to 1422 11 to 475       465/502
(92 %)
14 diff
(97.3 %id)
AI889077 colon, colon tumor, RER+ .b 1362 to 2017 657 to 1       657/743
(88 %)
32 diff
(95.7 %id)
AK293607 cerebellum .c 1 to 1805 1 to 1766 N402P V403G M404L S405C E406G ... tiling clone, Suspected internal deletion 1766/1766
(100 %)
1 diff
(100.0 %id)
NM_001134406.1   .d 1 to 3903 1 to 3903 exact RefSeq,   3903/3903
(100 %)
0 diff
(100 %id)
DA483570 brain .d 2 to 450 2 to 448   tiling clone, capped   447/450
(99 %)
5 diff
(98.9 %id)
BG707490 brain, hypothalamus .d 37 to 854 1 to 810       812/811
(100 %)
31 diff
(96.2 %id)
BC022520 Brain, hypothalamus .d 50 to 2045 1 to 1995 L47M E189G L374P A378K S379L ... available from MGC, AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 1995/1995
(100 %)
14 diff
(99.3 %id)
DB456076 testis .d 97 to 587 1 to 492       492/492
(100 %)
6 diff
(98.8 %id)
DA180750 amygdala .d 134 to 703 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DC304423 cerebellum .d 185 to 763 1 to 579   tiling clone,   579/579
(100 %)
0 diff
(100 %id)
DB464679 hippocampus .d 187 to 649 1 to 462       462/479
(96 %)
3 diff
(99.4 %id)
DA073759 cerebellum .d 192 to 762 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DB468514 hippocampus .d 201 to 535 1 to 335       335/363
(92 %)
12 diff
(96.7 %id)
DA687755   .d 202 to 744 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DB211643 trachea .d 202 to 716 2 to 518   capped   517/517
(100 %)
3 diff
(99.5 %id)
DA126788 cerebellum .d 204 to 790 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
CN263831 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 213 to 940 13 to 741       729/741
(98 %)
8 diff
(99.0 %id)
BX442224 brain, fetal brain .d 215 to 1193 1 to 970   tiling clone,   970/992
(97 %)
13 diff
(98.7 %id)
BJ992318 hepatoblastoma .d 227 to 675 1 to 449       449/449
(100 %)
1 diff
(99.8 %id)
D81985 brain .d 262 to 490 1 to 230       230/230
(100 %)
3 diff
(98.7 %id)
DN990459 brain, whole brain .d 306 to 868 8 to 572       565/572
(98 %)
8 diff
(98.7 %id)
EL733117 mixed .d 412 to 1024 1 to 613       613/613
(100 %)
2 diff
(99.7 %id)
BX394426 Neuroblastoma Cot 25-normalized .d 532 to 1039 1 to 506       506/506
(100 %)
19 diff
(96.3 %id)
AK091536 brain .d 1022 to 3901 1 to 2878   tiling clone, available from FLJ,   2878/2878
(100 %)
3 diff
(99.9 %id)
AX747043   .d 1022 to 3901 1 to 2878       2878/2878
(100 %)
3 diff
(99.9 %id)
DA506505 brain .d 1023 to 1589 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
TI_1948238566   .d 1208 to 1582 971 to 595     Submitted on the opposite strand 377/1333
(28 %)
15 diff
(98.9 %id)
TI_1948238567   .d 1260 to 1582 915 to 590     Submitted on the opposite strand 326/1148
(28 %)
17 diff
(98.6 %id)
AI825798 colon, colon tumor, RER+ .d 1363 to 2044 681 to 1       681/897
(75 %)
17 diff
(98.2 %id)
AA566137   .d 1368 to 1488 1 to 121       121/122
(99 %)
1 diff
(99.2 %id)
TI_1948238112   .d 1369 to 1582 809 to 597     Submitted on the opposite strand 213/1180
(18 %)
0 diff
(100 %id)
TI_1948238329   .d 1369 to 1582 824 to 611     Submitted on the opposite strand 214/1365
(15 %)
8 diff
(99.5 %id)
AI627179 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .d 1459 to 2044 596 to 10       587/596
(98 %)
3 diff
(99.5 %id)
DB315042 brain .d 1508 to 2045 539 to 1       539/539
(100 %)
1 diff
(99.9 %id)
BJ992319 hepatoblastoma .d 1659 to 2009 349 to 1       349/349
(100 %)
1 diff
(99.8 %id)
DB316106 brain .d 3363 to 3901 539 to 1       539/539
(100 %)
0 diff
(100 %id)
AY033596   .e 1 to 3384 1 to 3379 F7V N90S S148G E268G tiling clone,   3379/3379
(100 %)
12 diff
(99.7 %id)
BF185433 bone marrow, from acute myelogenous leukemia .e 1 to 633 1 to 630       630/878
(71 %)
15 diff
(98.3 %id)
BM543416 embryonal carcinoma, cell line, testis .e 52 to 857 1 to 812   tiling clone,   812/962
(84 %)
10 diff
(99.0 %id)
DB521486 testis .e 1064 to 1531 1 to 470     Submitted on the opposite strand 470/470
(100 %)
2 diff
(99.6 %id)
DB535821 hippocampus .e 1083 to 1531 1 to 448     Submitted on the opposite strand 448/448
(100 %)
1 diff
(99.8 %id)
BX105936 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .e 1085 to 1545 461 to 1     Submitted on the opposite strand 461/461
(100 %)
2 diff
(99.6 %id)
BX280127 brain, hypothalamus .e 1088 to 1547 473 to 13   tiling clone, Submitted on the opposite strand 461/473
(97 %)
0 diff
(100 %id)
DB554958 hypothalamus .e 1095 to 1531 2 to 434     Submitted on the opposite strand 433/434
(99 %)
6 diff
(98.7 %id)
DB555731 hypothalamus .e 1099 to 1531 12 to 449     Submitted on the opposite strand 438/449
(97 %)
6 diff
(98.7 %id)
DB523501 testis .e 1102 to 1531 1 to 430     Submitted on the opposite strand 430/430
(100 %)
0 diff
(100 %id)
BG258211 embryonal carcinoma, cell line, testis .e 1680 to 2351 1 to 662   tiling clone,   662/935
(70 %)
25 diff
(97.4 %id)
BM718501 eye, fetal eye .e 1895 to 2437 1 to 544     Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 544/544
(100 %)
1 diff
(99.9 %id)
BM729011 eye, fetal eye .e 2054 to 2689 1 to 639   tiling clone, fully sequenced, Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 639/639
(100 %)
3 diff
(99.6 %id)
D81418 brain .e 2119 to 2384 1 to 266       266/266
(100 %)
8 diff
(97.0 %id)
DW465717 Liver .e 2150 to 2489 17 to 356       340/356
(95 %)
6 diff
(98.4 %id)
BM711085 eye, fetal eyes .e 2460 to 2922 1 to 463       463/463
(100 %)
0 diff
(100 %id)
H96468 pineal gland .e 2479 to 2873 1 to 401       401/401
(100 %)
8 diff
(98.1 %id)
BM681954 eye, fetal eye .e 2678 to 3388 726 to 19   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 708/708
(100 %)
3 diff
(99.6 %id)
BM683546 eye, fetal eye .e 2700 to 3387 704 to 19   AAA Possibly primed on the genome, locally A rich (19/19 A in genome downstream of last aligned base) 686/686
(100 %)
2 diff
(99.8 %id)
AI928037 Kidney .e 2812 to 3387 583 to 8       576/583
(98 %)
0 diff
(100 %id)
AA576095 breast, breast tumor .e 2936 to 3354 419 to 1       419/419
(100 %)
0 diff
(100 %id)
AI377469   .e 2937 to 3387 455 to 5       451/455
(99 %)
0 diff
(100 %id)
DB512337 testis .e 3126 to 3383 1 to 257     Submitted on the opposite strand 257/258
(99 %)
7 diff
(97.3 %id)
BP230338 brain .f 1 to 583 1 to 583 S20G tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
BP349533 brain .g 1 to 582 1 to 582 I35T tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
BP350020 brain .g 1 to 575 1 to 575       575/583
(98 %)
2 diff
(99.7 %id)
DA126773 cerebellum .h 1 to 591 2 to 594   tiling clone, capped   593/593
(100 %)
3 diff
(99.5 %id)
AA566134   .h 514 to 769 1 to 255   tiling clone,   255/255
(100 %)
3 diff
(98.9 %id)
DB447370 testis .i 1 to 431 1 to 431   tiling clone,   431/431
(100 %)
5 diff
(98.9 %id)
AV759250 bone marrow .i 371 to 796 1 to 419   tiling clone,   419/421
(99 %)
23 diff
(94.6 %id)
DA691423   Gene RUNDC3B, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C