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Gene RPH3ALTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
144 supporting clones for gene RPH3AL back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_001190411.1   .a 1 to 2577 2 to 2578 exact RefSeq,   2578/2578
(100 %)
0 diff
(100 %id)
DA378956 thalamus .a 1 to 554 2 to 555   tiling clone, capped   554/554
(100 %)
0 diff
(100 %id)
DB221223 trachea .a 1 to 549 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DA640799 Liver .a 16 to 596 2 to 582   capped   581/581
(100 %)
0 diff
(100 %id)
DA762860 tongue .a 16 to 578 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA534510 brain .a 19 to 581 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA878994 Prostate .a 19 to 590 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA964285 stomach .a 19 to 565 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
DA584021 lung .a 32 to 622 2 to 592   capped   591/595
(99 %)
2 diff
(99.7 %id)
DA438383 tongue, tumor tissue .a 35 to 581 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA625350 Kidney .a 35 to 593 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA450779 tongue, tumor tissue .a 36 to 608 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA590067 lung .a 38 to 610 2 to 575   capped   574/578
(99 %)
4 diff
(99.4 %id)
BQ686588 ductal carcinoma, cell line, Pancreas .a 46 to 770 17 to 744       728/918
(79 %)
15 diff
(98.4 %id)
DA435182 tongue, tumor tissue .a 51 to 602 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
BG331746 large cell carcinoma, lung .a 51 to 777 1 to 728       726/982
(73 %)
24 diff
(97.6 %id)
BG331420 large cell carcinoma, lung .a 53 to 610 1 to 567       567/928
(61 %)
28 diff
(97.0 %id)
BQ879152 ductal carcinoma, cell line, Pancreas .a 57 to 770 1 to 721       721/927
(77 %)
26 diff
(97.2 %id)
BU197069 ductal carcinoma, cell line, Pancreas .a 57 to 894 1 to 842       842/962
(87 %)
9 diff
(99.1 %id)
BQ690360 ductal carcinoma, cell line, Pancreas .a 57 to 883 1 to 831       829/938
(88 %)
17 diff
(98.2 %id)
BQ955243 large cell carcinoma, lung .a 57 to 943 1 to 893       893/933
(95 %)
14 diff
(98.5 %id)
BQ878642 ductal carcinoma, cell line, Pancreas .a 58 to 780 1 to 724       724/953
(75 %)
22 diff
(97.7 %id)
BQ957792 large cell carcinoma, lung .a 58 to 610 1 to 553       553/972
(56 %)
9 diff
(99.1 %id)
DA053582   .a 76 to 678 2 to 604   capped   603/603
(100 %)
0 diff
(100 %id)
TI_891530395   .a 121 to 752 634 to 4     Submitted on the opposite strand 631/1239
(50 %)
7 diff
(99.5 %id)
TI_1243020491   .a 121 to 752 637 to 7       631/1266
(49 %)
6 diff
(99.6 %id)
TI_891528790   .a 125 to 1122 33 to 1029 P292R V293*   Submitted on the opposite strand 1003/1218
(82 %)
14 diff
(98.9 %id)
TI_1243021339   .a 125 to 895 125 to 901     Submitted on the opposite strand 781/976
(80 %)
16 diff
(98.4 %id)
TI_1243023307   .a 125 to 1146 56 to 1077 A302L A303L D304T A305Q A306L ...   Submitted on the opposite strand 1026/1237
(82 %)
15 diff
(98.8 %id)
BC093776 Liver, PCR rescued clones .a 130 to 1194 1 to 1065 exact     1065/1065
(100 %)
2 diff
(99.9 %id)
BC113413 Liver, PCR rescued clones .a 130 to 1194 1 to 1065 exact     1065/1065
(100 %)
0 diff
(100 %id)
TI_891528796   .a 130 to 1196 1114 to 56 Q20S L21C A22L L23R R24A ...   Submitted on the opposite strand 1059/1249
(84 %)
13 diff
(99.0 %id)
DN997925 breast cancer, Mammary gland (cancer tissue) .a 130 to 721 32 to 623       594/623
(95 %)
6 diff
(99.1 %id)
TI_1243022923   .a 170 to 1196 1082 to 59     Submitted on the opposite strand 1024/1254
(81 %)
4 diff
(99.7 %id)
TI_891527878   .a 244 to 1196 27 to 979       952/1225
(77 %)
7 diff
(99.5 %id)
TI_1243017805   .a 244 to 1196 978 to 30   tiling clone, Submitted on the opposite strand 949/1191
(79 %)
8 diff
(99.4 %id)
BQ959005 carcinoma, cell line, Prostate .a 459 to 1041 1 to 591       591/973
(60 %)
8 diff
(99.2 %id)
BF308413 muscle, rhabdomyosarcoma .a 520 to 1176 1 to 652       652/925
(70 %)
18 diff
(98.1 %id)
BM563482 astrocytoma grade IV, cell line, brain .a 531 to 1416 27 to 921   tiling clone,   895/1062
(84 %)
24 diff
(97.8 %id)
NM_006987.3   .b 1 to 2753 2 to 2754 exact RefSeq,   2754/2754
(100 %)
0 diff
(100 %id)
AK000469   .b 57 to 2636 1 to 2580 exact tiling clone, available from FLJ, AAA   2580/2580
(100 %)
7 diff
(99.8 %id)
DA058549 cerebellum .c 1 to 532 2 to 533   tiling clone, capped   532/532
(100 %)
2 diff
(99.7 %id)
DA872882 Prostate .c 32 to 609 2 to 579   tiling clone, capped   578/578
(100 %)
1 diff
(99.9 %id)
BM048250 carcinoma, cell line, Prostate .c 385 to 1032 1 to 649   tiling clone,   649/649
(100 %)
3 diff
(99.6 %id)
BC005153 Muscle, rhabdomyosarcoma .d 1 to 2805 10 to 2814 R85Q tiling clone, available from MGC, AAA   2805/2805
(100 %)
4 diff
(99.9 %id)
BE296576 muscle, rhabdomyosarcoma .d 22 to 657 1 to 644       644/644
(100 %)
16 diff
(97.6 %id)
NM_001190412.1   .d 256 to 2922 1 to 2667 exact RefSeq,   2667/2667
(100 %)
0 diff
(100 %id)
BX951486   .d 290 to 893 1 to 604       604/604
(100 %)
3 diff
(99.6 %id)
BX393787 Neuroblastoma Cot 25-normalized .d 562 to 1477 1 to 912 V201G R202Q D203G R204P K205E ... tiling clone,   912/968
(94 %)
24 diff
(97.6 %id)
TI_891527879   .d 948 to 1541 54 to 647       594/1223
(48 %)
7 diff
(99.5 %id)
CN354599 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 971 to 1700 1 to 733       733/733
(100 %)
6 diff
(99.2 %id)
TI_891527880   .d 1172 to 1541 1 to 370       370/1234
(29 %)
5 diff
(99.6 %id)
BX375122 Neuroblastoma Cot 25-normalized .d 1237 to 2263 1 to 1012       1014/1107
(91 %)
13 diff
(98.9 %id)
BI032024 marrow .d 1535 to 1733 1 to 200       200/210
(95 %)
6 diff
(97.2 %id)
EC578487 Prostate .d 1611 to 1720 115 to 7       109/115
(94 %)
0 diff
(100 %id)
DN995280 breast cancer, Mammary gland (cancer tissue) .d 1778 to 2448 9 to 679       671/679
(98 %)
3 diff
(99.6 %id)
BM554533 amelanotic melanoma, cell line, skin .d 1837 to 2794 12 to 970   AAA   959/982
(97 %)
6 diff
(99.4 %id)
BF433309 carcinoid, lung .d 1844 to 2124 1 to 281     Submitted on the opposite strand 281/281
(100 %)
2 diff
(99.3 %id)
BF507559   .d 1895 to 2100 223 to 18   tiling clone, AAA   206/215
(95 %)
0 diff
(100 %id)
BM857834 insulinoma, Pancreas .d 1924 to 2355 1 to 432   fully sequenced,   432/432
(100 %)
9 diff
(98.0 %id)
BQ270371 insulinoma, Pancreas .d 1924 to 2367 1 to 444   fully sequenced,   444/444
(100 %)
9 diff
(98.0 %id)
BE790113 large cell carcinoma, lung .d 1974 to 2754 1 to 777       777/850
(91 %)
24 diff
(97.2 %id)
BM991347 lung, Lung Focal Fibrosis .d 2041 to 2573 1 to 532     Submitted on the opposite strand 532/532
(100 %)
10 diff
(98.2 %id)
BU568991 testis .d 2061 to 2797 1 to 744   tiling clone,   744/748
(99 %)
18 diff
(97.6 %id)
CD369105 Alveolar Macrophage, lung .d 2193 to 2805 632 to 19   AAA   614/614
(100 %)
4 diff
(99.4 %id)
BQ016806 lung, Lung Focal Fibrosis .d 2196 to 2812 636 to 19   AAA   618/619
(99 %)
13 diff
(97.9 %id)
TI_154093047   .d 2207 to 2696 96 to 593     Submitted on the opposite strand 498/593
(83 %)
6 diff
(99.0 %id)
CA434733 lung, Lung Focal Fibrosis .d 2207 to 2618 4 to 417     Submitted on the opposite strand 414/417
(99 %)
7 diff
(98.4 %id)
AI298597 carcinoid, lung .d 2220 to 2627 1 to 408     Submitted on the opposite strand 408/408
(100 %)
0 diff
(100 %id)
CA406245 adipose .d 2234 to 2750 1 to 513       513/513
(100 %)
6 diff
(98.9 %id)
BE673808 carcinoid, lung .d 2280 to 2747 1 to 468     Submitted on the opposite strand 468/468
(100 %)
3 diff
(99.4 %id)
BQ187975 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2281 to 2805 1 to 526   fully sequenced, AAA   526/526
(100 %)
3 diff
(99.5 %id)
AI761623 pooled .d 2285 to 2812 541 to 14   AAA   528/528
(100 %)
7 diff
(98.7 %id)
AA583168 germ cell tumor .d 2296 to 2680 384 to 1       384/384
(100 %)
1 diff
(99.8 %id)
BF058077 fibrotheoma, ovary .d 2303 to 2820 518 to 1       518/518
(100 %)
0 diff
(100 %id)
BP392803 pancreatic islet .d 2314 to 2813 1 to 500     Submitted on the opposite strand 500/500
(100 %)
0 diff
(100 %id)
BQ185163 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 2322 to 2805 502 to 19   fully sequenced, AAA   484/484
(100 %)
1 diff
(99.8 %id)
BM857660 insulinoma, Pancreas .d 2325 to 2792 468 to 1   fully sequenced,   468/468
(100 %)
5 diff
(99.0 %id)
BF939647 brain, glioblastoma (pooled) .d 2330 to 2799 470 to 1       470/540
(87 %)
0 diff
(100 %id)
BU071688 insulinoma, Pancreas .d 2340 to 2602 1 to 263       263/263
(100 %)
0 diff
(100 %id)
BP275333 Kidney .d 2340 to 2922 1 to 582   tiling clone,   582/582
(100 %)
3 diff
(99.5 %id)
BQ267463 insulinoma, Pancreas .d 2343 to 2805 478 to 16   fully sequenced, AAA   463/463
(100 %)
1 diff
(99.8 %id)
AI991188 colon, colonic mucosa from 3 patients with Crohn'sdisease .d 2362 to 2804 459 to 17   AAA   443/443
(100 %)
10 diff
(97.8 %id)
BU569481 testis .d 2390 to 2806 1 to 417       417/780
(53 %)
2 diff
(99.8 %id)
AI027577 brain, glioblastoma (pooled) .d 2407 to 2806 400 to 1       400/400
(100 %)
0 diff
(100 %id)
AA713860 synovial sarcoma .d 2415 to 2680 266 to 1       266/266
(100 %)
4 diff
(98.5 %id)
BP385101 pancreatic islet .d 2497 to 2804 1 to 307     Submitted on the opposite strand 307/307
(100 %)
1 diff
(99.7 %id)
BM352085 Pancreas, Purified pancreatic islet .d 2513 to 2819 310 to 4       307/310
(99 %)
0 diff
(100 %id)
CK818909 Islets of Langerhans, Pancreas .d 2526 to 2835 310 to 1       310/314
(98 %)
4 diff
(98.8 %id)
CK818910 Islets of Langerhans, Pancreas .d 2534 to 2835 1 to 302   AAA   302/302
(100 %)
0 diff
(100 %id)
BM126316 Islets of Langerhans, Pancreas .d 2550 to 2681 1 to 132       132/132
(100 %)
0 diff
(100 %id)
BM126036 Islets of Langerhans, Pancreas .d 2580 to 2835 258 to 1       258/258
(100 %)
3 diff
(98.9 %id)
AA894812 Kidney .d 2607 to 2813 208 to 3       206/208
(99 %)
0 diff
(100 %id)
AW007085 colon .d 2618 to 2813 200 to 5       196/200
(98 %)
0 diff
(100 %id)
AA911322 carcinoid, lung .d 2623 to 2813 191 to 1       191/191
(100 %)
6 diff
(96.9 %id)
T74766 Liver .d 2659 to 3070 426 to 3   tiling clone,   424/426
(99 %)
0 diff
(100 %id)
AW338854 adenocarcinoma, Pancreas .d 2698 to 2809 114 to 3       112/114
(98 %)
0 diff
(100 %id)
BU073233 insulinoma, Pancreas .d 2710 to 2800 95 to 5       91/95
(95 %)
0 diff
(100 %id)
NM_001190413.1   .e 1 to 2490 2 to 2491 exact RefSeq,   2491/2491
(100 %)
0 diff
(100 %id)
DA434563 tongue, tumor tissue .e 19 to 512 2 to 495   capped   494/494
(100 %)
1 diff
(99.8 %id)
DB190757 lung, tumor tissue .e 19 to 584 2 to 567   tiling clone, capped   566/566
(100 %)
1 diff
(99.9 %id)
BG506767 lung .e 23 to 767 1 to 749       723/749
(96 %)
26 diff
(96.6 %id)
AK291950   .e 31 to 1234 1 to 1204 A274V tiling clone,   1204/1204
(100 %)
2 diff
(99.9 %id)
DA907386   .e 32 to 600 2 to 572   capped   571/571
(100 %)
4 diff
(99.3 %id)
CA849097 Pancreas, Purified pancreatic islet .e 1098 to 1652 1 to 555   tiling clone,   555/555
(100 %)
2 diff
(99.7 %id)
T48781 placenta .e 1281 to 1549 1 to 274       274/279
(98 %)
9 diff
(96.8 %id)
CA848916 Pancreas, Purified pancreatic islet .e 1929 to 2381 454 to 2   tiling clone,   453/454
(99 %)
0 diff
(100 %id)
T48782 placenta .e 2056 to 2354 301 to 1       301/305
(98 %)
2 diff
(99.4 %id)
DA066065 cerebellum .f 1 to 557 2 to 558   tiling clone, capped   557/557
(100 %)
0 diff
(100 %id)
DA957276 Spleen .f 29 to 592 2 to 565   capped   564/564
(100 %)
4 diff
(99.3 %id)
DA012745 adrenal gland .f 38 to 595 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
TI_2194576238   .f 298 to 1224 983 to 57 S109P   Submitted on the opposite strand 927/1270
(72 %)
9 diff
(99.3 %id)
TI_2194577384   .f 298 to 1224 978 to 54 C15A N17M D18T R19G Q20S ...   Submitted on the opposite strand 925/1222
(75 %)
13 diff
(99.0 %id)
TI_2194576619   .f 302 to 1224 51 to 977 S109P tiling clone, Submitted on the opposite strand 931/1257
(74 %)
11 diff
(99.2 %id)
TI_2194577388   .f 302 to 1224 54 to 979 S109P K240E E241G S242V G243R ...   Submitted on the opposite strand 930/1192
(78 %)
15 diff
(98.8 %id)
BC143311 Liver, PCR rescued clones .f 307 to 1222 1 to 916 S109P tiling clone,   916/916
(100 %)
4 diff
(99.6 %id)
BM549185 melanotic melanoma, skin .g 1 to 776 1 to 778 R204K V205S V206G S207F S208Q ... tiling clone,   772/1093
(70 %)
8 diff
(99.3 %id)
BJ992922 hepatoblastoma .h 1 to 497 1 to 496   tiling clone,   496/496
(100 %)
1 diff
(99.8 %id)
BQ707085 Spleen .h 43 to 820 10 to 791 P184T A185G E186K R187A E188R ... tiling clone,   782/1012
(77 %)
11 diff
(99.0 %id)
BG824527 adenocarcinoma cell line, colon .i 1 to 744 1 to 743 G91V P129L G130A Q131R K132S ... tiling clone,   743/823
(90 %)
9 diff
(99.0 %id)
CD722823 eye, lacrimal gland .j 1 to 594 1 to 594 exact tiling clone,   594/594
(100 %)
0 diff
(100 %id)
DA070349 cerebellum .k 1 to 578 2 to 580   tiling clone, capped   579/579
(100 %)
3 diff
(99.5 %id)
AI080275 senescent fibroblast .k 261 to 952 699 to 8   tiling clone,   690/699
(98 %)
6 diff
(99.2 %id)
DA948459 Spleen .l 1 to 548 2 to 552 W31L S32G V33P H34V T35H ... tiling clone, capped   551/551
(100 %)
6 diff
(99.0 %id)
DA958129 Spleen .m 1 to 536 2 to 537 exact tiling clone, capped   536/536
(100 %)
2 diff
(99.7 %id)
DB173090 kidney, tumor tissue .n 1 to 586 2 to 587 exact tiling clone, capped   586/586
(100 %)
0 diff
(100 %id)
DA821405 pericardium .o 1 to 568 2 to 569 exact tiling clone, capped   568/568
(100 %)
0 diff
(100 %id)
BG331517 large cell carcinoma, lung .p 1 to 487 1 to 493 W17L V18G K19E P20A L21P ... tiling clone,   493/998
(49 %)
9 diff
(99.1 %id)
DA045843 bladder .q 1 to 566 2 to 567 N10D tiling clone, capped   566/566
(100 %)
1 diff
(99.9 %id)
DA079263 cerebellum .r 1 to 567 2 to 568 exact tiling clone, capped   567/567
(100 %)
0 diff
(100 %id)
DA166900 amygdala .s 1 to 570 2 to 571 exact tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
BU844679 ovary, teratocarcinoma, cell line .t 1 to 880 1 to 888 A53V tiling clone,   888/888
(100 %)
26 diff
(97.1 %id)
AA903412 pooled germ cell tumors .t 66 to 481 424 to 11 G32D R34A L37* tiling clone, AAA   414/416
(99 %)
14 diff
(96.7 %id)
BX089247 breast .u -9 to 144 1 to 154   tiling clone,   154/154
(100 %)
1 diff
(99.4 %id)
AA305413 colon .u 19 to 424 1 to 405   tiling clone,   405/405
(100 %)
7 diff
(98.3 %id)
AI004159 breast .u 325 to 766 442 to 1   tiling clone,   442/442
(100 %)
1 diff
(99.8 %id)
AI768870 2 pooled tumors (clear cell type), Kidney .u 383 to 767 393 to 11   AAA   383/383
(100 %)
8 diff
(98.0 %id)
AW592891 pooled .u 399 to 767 369 to 1       369/369
(100 %)
1 diff
(99.8 %id)
AA933807 2 pooled tumors (clear cell type), Kidney .u 403 to 767 377 to 13   tiling clone, AAA   365/365
(100 %)
1 diff
(99.8 %id)
BE041511 pooled .u 464 to 767 304 to 1       304/304
(100 %)
1 diff
(99.7 %id)
BM264290 Pancreas, Purified pancreatic islet .va 1 to 555 1 to 555 exact tiling clone,   555/555
(100 %)
0 diff
(100 %id)
DB059511 testis .vb 1 to 529 2 to 530   tiling clone, capped   529/529
(100 %)
1 diff
(99.9 %id)
DA940304 Spleen .vc 1 to 486 2 to 489 H46N tiling clone, capped   488/488
(100 %)
3 diff
(99.4 %id)
AV708334 adrenal gland Gene RPH3AL, variant not shown         Suspected internal deletion, this clone was ignored    
AF129812   Gene RPH3AL, variant not shown         This clone was ignored    
AW449919   Gene RPH3AL, variant not shown         Submitted on the opposite strand    
BG332902 large cell carcinoma, lung Gene RPH3AL, variant not shown         This clone was ignored    
BG331081 large cell carcinoma, lung Gene RPH3AL, variant not shown         This clone was ignored    
BM682521 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid Gene RPH3AL, variant not shown         Submitted on the opposite strand    
TI_151778892   Gene RPH3AL, variant not shown         Submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI