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Gene RPH3ATABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
439 supporting clones for gene RPH3A back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA107972 cerebellum .a 1 to 505 2 to 536   tiling clone, capped   535/535
(100 %)
9 diff
(98.4 %id)
DA409034 thalamus .a 2 to 632 2 to 644   capped   643/650
(98 %)
10 diff
(98.5 %id)
DA228075 brain .a 44 to 564 2 to 556   capped   436/555
(78 %)
14 diff
(97.5 %id)
DA110339 cerebellum .a 56 to 519 2 to 497   capped   496/496
(100 %)
10 diff
(98.0 %id)
DA119478 cerebellum .a 59 to 580 2 to 543   capped   542/542
(100 %)
9 diff
(98.4 %id)
DA127865 cerebellum .a 59 to 634 2 to 595   capped   594/594
(100 %)
11 diff
(98.2 %id)
DA233571 brain .a 65 to 608 2 to 590   capped   458/589
(77 %)
15 diff
(97.5 %id)
DA754707   .a 91 to 590 2 to 545   capped   415/544
(76 %)
15 diff
(97.3 %id)
NM_001143854.1   .a 141 to 4730 1 to 4590 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 4590/4590
(100 %)
0 diff
(100 %id)
DA328098 hippocampus .a 142 to 666 2 to 554   capped   553/553
(100 %)
9 diff
(98.4 %id)
DA332963 hippocampus .a 142 to 730 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DB178957 kidney, tumor tissue .a 142 to 686 2 to 560   capped   559/559
(100 %)
10 diff
(98.3 %id)
DA117259 cerebellum .a 144 to 671 2 to 547   capped   546/546
(100 %)
11 diff
(98.0 %id)
DC314788 amygdala .a 145 to 634 1 to 490       490/490
(100 %)
1 diff
(99.8 %id)
DA092489 cerebellum .a 146 to 603 2 to 491   capped   490/490
(100 %)
9 diff
(98.2 %id)
DA117293 cerebellum .a 146 to 632 2 to 520   capped   519/548
(94 %)
9 diff
(98.4 %id)
DA118767 cerebellum .a 146 to 632 2 to 520   capped   519/539
(96 %)
9 diff
(98.4 %id)
DA187910 amygdala .a 146 to 632 2 to 516   capped   515/546
(94 %)
9 diff
(98.4 %id)
DA221636 brain .a 146 to 603 2 to 491   capped   490/490
(100 %)
9 diff
(98.2 %id)
DA314585 hippocampus .a 146 to 676 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
DA333187 hippocampus .a 146 to 698 2 to 576   capped   575/575
(100 %)
9 diff
(98.5 %id)
DA336157 hippocampus .a 146 to 692 2 to 580   capped   579/579
(100 %)
10 diff
(98.3 %id)
DA194662 amygdala .a 148 to 744 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DA093711 cerebellum .a 158 to 729 2 to 593   capped   592/592
(100 %)
9 diff
(98.5 %id)
DA113123 cerebellum .a 198 to 727 2 to 561   capped   560/560
(100 %)
10 diff
(98.3 %id)
DA105539 cerebellum .a 230 to 777 2 to 569   capped   568/569
(99 %)
10 diff
(98.3 %id)
DA111570 cerebellum .a 239 to 796 2 to 589   capped   588/588
(100 %)
9 diff
(98.5 %id)
AB023202 brain .a 248 to 4730 28 to 4511 exact tiling clone, available from KIAA,   4484/4511
(99 %)
6 diff
(99.9 %id)
DA197369 brain .a 248 to 675 137 to 565   capped   429/564
(76 %)
6 diff
(99.0 %id)
DA234314 brain .a 248 to 677 150 to 580   capped   431/579
(74 %)
6 diff
(99.0 %id)
DA234386 brain .a 248 to 677 146 to 576   capped   431/575
(74 %)
6 diff
(99.0 %id)
DA234777 brain .a 248 to 709 137 to 599   capped   463/598
(77 %)
6 diff
(99.0 %id)
DA244438 brain .a 248 to 715 125 to 593   capped   469/592
(79 %)
8 diff
(98.7 %id)
DA244840 brain .a 248 to 674 149 to 576   capped   428/575
(74 %)
6 diff
(99.0 %id)
DA316608 hippocampus .a 248 to 719 75 to 547   capped   473/546
(86 %)
6 diff
(99.0 %id)
DA326365 hippocampus .a 248 to 632 147 to 532   capped   386/549
(70 %)
6 diff
(99.0 %id)
DA336436 hippocampus .a 248 to 689 125 to 567   capped   443/566
(78 %)
6 diff
(99.0 %id)
DA721462   .a 248 to 678 158 to 589   capped   432/588
(73 %)
6 diff
(99.0 %id)
DA105019 cerebellum .a 267 to 841 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA099789 cerebellum .a 289 to 842 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA213507 brain .a 290 to 797 2 to 512   capped   511/511
(100 %)
4 diff
(99.3 %id)
DA105886 cerebellum .a 298 to 772 2 to 476   capped   475/475
(100 %)
0 diff
(100 %id)
DA236566 brain .a 298 to 871 2 to 575   tiling clone, capped   574/574
(100 %)
0 diff
(100 %id)
DA223885 brain .a 300 to 766 2 to 469   capped   468/468
(100 %)
1 diff
(99.8 %id)
DA220429 brain .a 302 to 855 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
AK316112 thalamus .a 306 to 2894 1 to 2589 E103K     2589/2589
(100 %)
2 diff
(100.0 %id)
BP250970 hippocampus .a 306 to 885 1 to 581       581/581
(100 %)
10 diff
(98.3 %id)
DA093201 cerebellum .a 307 to 866 2 to 561   capped   560/560
(100 %)
3 diff
(99.5 %id)
DA094386 cerebellum .a 307 to 862 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA096300 cerebellum .a 307 to 851 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA096958 cerebellum .a 307 to 866 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
DA108423 cerebellum .a 307 to 869 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA112105 cerebellum .a 307 to 840 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
DA116035 cerebellum .a 307 to 862 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA121159 cerebellum .a 307 to 848 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA125034 cerebellum .a 307 to 865 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA187476 amygdala .a 307 to 797 2 to 493   capped   492/492
(100 %)
1 diff
(99.8 %id)
DA228498 brain .a 307 to 860 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA228699 brain .a 307 to 811 2 to 506   capped   505/505
(100 %)
0 diff
(100 %id)
DA336992 hippocampus .a 307 to 889 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA396095 thalamus .a 307 to 876 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA411189 thalamus .a 307 to 976 2 to 674   capped   673/673
(100 %)
4 diff
(99.5 %id)
DA418909 thalamus .a 307 to 872 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA096920 cerebellum .a 308 to 868 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA093772 cerebellum .a 309 to 859 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA094337 cerebellum .a 309 to 811 2 to 504   capped   503/503
(100 %)
0 diff
(100 %id)
DA098689 cerebellum .a 309 to 858 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA103810 cerebellum .a 309 to 852 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA103825 cerebellum .a 309 to 858 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA121694 cerebellum .a 309 to 862 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA127580 cerebellum .a 309 to 896 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA159191 amygdala .a 309 to 872 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA211891 brain .a 309 to 876 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA223242 brain .a 309 to 866 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA232409 brain .a 309 to 873 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA234923 brain .a 309 to 900 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DA238527 brain .a 309 to 899 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA314168 hippocampus .a 309 to 871 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA314883 hippocampus .a 309 to 851 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA334863 hippocampus .a 309 to 865 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA336862 hippocampus .a 309 to 900 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
BP211609 cerebrum .a 309 to 890 1 to 580       580/580
(100 %)
5 diff
(99.2 %id)
DA700208   .a 309 to 831 2 to 524   capped   523/523
(100 %)
0 diff
(100 %id)
DA101201 cerebellum .a 310 to 896 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
DA198299 brain .a 313 to 865 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
DA217466 brain .a 313 to 844 2 to 533   capped   532/532
(100 %)
1 diff
(99.9 %id)
DA232868 brain .a 314 to 878 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA105530 cerebellum .a 317 to 882 2 to 567   capped   566/566
(100 %)
4 diff
(99.3 %id)
DA098282 cerebellum .a 318 to 866 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA107680 cerebellum .a 320 to 873 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA115416 cerebellum .a 320 to 862 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA123733 cerebellum .a 320 to 852 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DA191131 amygdala .a 320 to 903 2 to 585   capped   584/586
(99 %)
1 diff
(99.9 %id)
DA234955 brain .a 320 to 908 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DA086053 cerebellum .a 321 to 889 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA112381 cerebellum .a 321 to 735 123 to 537   capped   415/536
(77 %)
6 diff
(98.9 %id)
DA127698 cerebellum .a 321 to 908 2 to 589   capped   588/589
(99 %)
0 diff
(100 %id)
DA219521 brain .a 321 to 793 2 to 474   capped   473/473
(100 %)
0 diff
(100 %id)
DA105243 cerebellum .a 323 to 873 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA092802 cerebellum .a 324 to 894 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA092938 cerebellum .a 324 to 888 2 to 565   capped   564/565
(99 %)
2 diff
(99.7 %id)
DA093072 cerebellum .a 324 to 895 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA096615 cerebellum .a 324 to 854 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
DA102189 cerebellum .a 324 to 908 2 to 586   capped   585/586
(99 %)
1 diff
(99.9 %id)
DA102494 cerebellum .a 324 to 908 2 to 586   capped   585/593
(98 %)
0 diff
(100 %id)
DA103298 cerebellum .a 324 to 632 2 to 311   capped   310/310
(100 %)
2 diff
(99.4 %id)
DA106136 cerebellum .a 324 to 878 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA108954 cerebellum .a 324 to 905 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA110780 cerebellum .a 324 to 881 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DA111602 cerebellum .a 324 to 855 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DA112753 cerebellum .a 324 to 908 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA114652 cerebellum .a 324 to 879 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA115158 cerebellum .a 324 to 886 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DA123898 cerebellum .a 324 to 876 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA125447 cerebellum .a 324 to 907 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA125715 cerebellum .a 324 to 893 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA127047 cerebellum .a 324 to 895 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA203063 brain .a 324 to 890 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
DA211003 brain .a 324 to 787 2 to 465   capped   464/464
(100 %)
0 diff
(100 %id)
DA211172 brain .a 324 to 874 2 to 552   capped   551/554
(99 %)
1 diff
(99.9 %id)
DA216427 brain .a 324 to 797 2 to 475   capped   474/474
(100 %)
0 diff
(100 %id)
DA219847 brain .a 324 to 884 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DA219962 brain .a 324 to 884 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA222320 brain .a 324 to 874 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DA229328 brain .a 324 to 871 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA233378 brain .a 324 to 914 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
DA234498 brain .a 324 to 902 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA234695 brain .a 324 to 895 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA234735 brain .a 324 to 908 2 to 586   capped   585/586
(99 %)
0 diff
(100 %id)
DA243736 brain .a 324 to 786 2 to 464   capped   463/463
(100 %)
0 diff
(100 %id)
DA249491 brain .a 324 to 896 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA249526 brain .a 324 to 897 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA322518 hippocampus .a 324 to 866 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA336344 hippocampus .a 324 to 894 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA398798 thalamus .a 324 to 861 12 to 549   capped   538/538
(100 %)
0 diff
(100 %id)
DA418650 thalamus .a 324 to 985 2 to 664   capped   663/663
(100 %)
2 diff
(99.7 %id)
DA114084 cerebellum .a 328 to 877 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA122400 cerebellum .a 328 to 891 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA122477 cerebellum .a 328 to 853 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
DA223448 brain .a 330 to 985 2 to 657   capped   656/656
(100 %)
0 diff
(100 %id)
BP202468 amygdala .a 335 to 908 1 to 574       574/582
(98 %)
0 diff
(100 %id)
DA103259 cerebellum .a 336 to 867 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DA104854 cerebellum .a 336 to 905 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA217494 brain .a 336 to 873 2 to 539   capped   538/538
(100 %)
1 diff
(99.9 %id)
DA231606 brain .a 336 to 867 2 to 533   capped   532/532
(100 %)
0 diff
(100 %id)
DA095866 cerebellum .a 337 to 896 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA239101 brain .a 337 to 900 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA314372 hippocampus .a 337 to 908 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA153216 amygdala .a 338 to 903 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA228540 brain .a 338 to 890 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
BP229588 brain .a 338 to 936 1 to 598       598/598
(100 %)
2 diff
(99.7 %id)
DA092250 cerebellum .a 339 to 921 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA105039 cerebellum .a 339 to 887 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
DA108201 cerebellum .a 339 to 913 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA110092 cerebellum .a 339 to 892 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA120662 cerebellum .a 339 to 890 2 to 554   capped   553/553
(100 %)
3 diff
(99.5 %id)
DA120791 cerebellum .a 339 to 807 2 to 470   capped   469/469
(100 %)
0 diff
(100 %id)
DA124647 cerebellum .a 339 to 873 2 to 537   capped   536/536
(100 %)
1 diff
(99.9 %id)
DA213288 brain .a 339 to 892 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DA239234 brain .a 339 to 913 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
DA242111 brain .a 339 to 915 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA318928 hippocampus .a 339 to 993 2 to 656   capped   655/655
(100 %)
0 diff
(100 %id)
DA330125 hippocampus .a 339 to 893 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA404463 thalamus .a 339 to 929 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
DA413085 thalamus .a 339 to 893 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA417459 thalamus .a 339 to 893 2 to 556   capped   555/555
(100 %)
0 diff
(100 %id)
DA388692 thalamus .a 340 to 928 2 to 591   capped   590/590
(100 %)
1 diff
(99.9 %id)
DA233679 brain .a 342 to 946 2 to 606   capped   605/605
(100 %)
0 diff
(100 %id)
DA315962 hippocampus .a 349 to 887 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
DA093264 cerebellum .a 353 to 921 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA093334 cerebellum .a 353 to 797 2 to 447   capped   446/446
(100 %)
2 diff
(99.6 %id)
DA095642 cerebellum .a 353 to 919 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA184219 amygdala .a 353 to 854 2 to 503   capped   502/502
(100 %)
0 diff
(100 %id)
DA212640 brain .a 353 to 889 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DA235176 brain .a 353 to 950 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DA239744 brain .a 353 to 908 2 to 557   capped   556/564
(98 %)
1 diff
(99.9 %id)
DA333514 hippocampus .a 353 to 924 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA403270 thalamus .a 353 to 899 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA211838 brain .a 355 to 919 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA225667 brain .a 359 to 919 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
BP310974 brain .a 359 to 936 1 to 578       578/583
(99 %)
2 diff
(99.7 %id)
DR002863 fetal brain .a 362 to 903 8 to 548       541/548
(98 %)
7 diff
(98.8 %id)
DA219530 brain .a 367 to 913 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DA124512 cerebellum .a 387 to 942 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AK296296 thalamus .a 455 to 3030 1 to 2429 L29R Q30L A31V G32D W33R ...     2423/2429
(99 %)
7 diff
(99.8 %id)
BF689552 melanotic melanoma, high MDR (cell line), skin .a 1964 to 2692 1 to 750       745/867
(85 %)
41 diff
(95.3 %id)
BI194871 brain, neuroblastoma .a 2161 to 2872 1 to 724       724/729
(99 %)
41 diff
(94.4 %id)
BF310620 brain, neuroblastoma .a 2162 to 2818 1 to 652       652/909
(71 %)
18 diff
(98.1 %id)
BF314954 brain, neuroblastoma .a 2162 to 2853 1 to 683       683/918
(74 %)
34 diff
(96.3 %id)
BE314212 brain, neuroblastoma .a 2182 to 2807 1 to 626       626/628
(99 %)
8 diff
(98.8 %id)
BG910352 anaplastic oligodendroglioma with 1p/19qloss, brain .a 2342 to 3024 1 to 693       693/827
(83 %)
18 diff
(97.9 %id)
DA063616 cerebellum .a 2354 to 2899 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA391086 thalamus .a 2400 to 2957 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA177026 amygdala .a 2402 to 2851 2 to 452   capped   451/451
(100 %)
1 diff
(99.8 %id)
DA068303 cerebellum .a 2417 to 2901 2 to 486   capped   485/485
(100 %)
0 diff
(100 %id)
DA301004 hippocampus .a 2424 to 2975 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DB521644 testis .a 2482 to 2950 1 to 469     Submitted on the opposite strand 469/471
(99 %)
2 diff
(99.6 %id)
BF344365 brain, glioblastoma with EGFR amplification .a 2497 to 3114 1 to 610       610/1075
(56 %)
17 diff
(98.5 %id)
DA366919 subthalamic nucleus .a 2523 to 3085 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
CK005531 brain/CNS, Human Brain - Frontal Cortex .a 2603 to 3257 1 to 649       649/649
(100 %)
17 diff
(97.4 %id)
R13057 whole brain .a 2623 to 2998 1 to 392       392/392
(100 %)
18 diff
(95.5 %id)
DA266483 caudate nucleus .a 2717 to 3271 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA367600 subthalamic nucleus .a 2718 to 3270 2 to 552   capped   551/552
(99 %)
2 diff
(99.7 %id)
BF689432 melanotic melanoma, high MDR (cell line), skin .a 2741 to 3373 1 to 647       647/647
(100 %)
26 diff
(96.0 %id)
R88479 brain .a 2745 to 3132 1 to 396       396/398
(99 %)
14 diff
(96.5 %id)
DA687694   .a 2761 to 3304 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
R90757 brain .a 2798 to 3125 1 to 329       329/329
(100 %)
1 diff
(99.7 %id)
DA138159 alzheimer cortex .a 2890 to 3437 2 to 547   capped   546/546
(100 %)
2 diff
(99.7 %id)
AA325807 brain, cerebellum .a 2913 to 3188 1 to 276       276/276
(100 %)
0 diff
(100 %id)
AW955347   .a 2914 to 3464 1 to 551       551/552
(99 %)
5 diff
(99.1 %id)
DA061980 cerebellum .a 3023 to 3585 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA612816   .a 3037 to 3541 2 to 506   capped   505/505
(100 %)
2 diff
(99.7 %id)
DA090002 cerebellum .a 3054 to 3600 2 to 548   capped   547/547
(100 %)
2 diff
(99.7 %id)
BI756895 brain .a 3094 to 4007 1 to 916       916/918
(99 %)
38 diff
(95.9 %id)
TI_57220147   .a 3094 to 4007 36 to 951       916/953
(96 %)
38 diff
(96.1 %id)
H15589 whole brain .a 3096 to 3573 1 to 488       488/535
(91 %)
23 diff
(95.8 %id)
TI_44342904   .a 3237 to 3989 123 to 873       751/877
(85 %)
6 diff
(99.4 %id)
BI666881 brain, hypothalamus .a 3242 to 3989 1 to 746       746/750
(99 %)
5 diff
(99.4 %id)
TI_57220254   .a 3250 to 4094 64 to 907       844/909
(92 %)
11 diff
(98.8 %id)
BI756408 brain .a 3255 to 4094 1 to 839       839/841
(99 %)
8 diff
(99.1 %id)
H10745 whole brain .a 3281 to 3608 1 to 334     Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 334/427
(78 %)
7 diff
(98.4 %id)
H38492 brain .a 3284 to 3698 1 to 424       424/432
(98 %)
14 diff
(96.8 %id)
BF978475 melanotic melanoma, high MDR, skin .a 3314 to 3945 1 to 636       636/817
(77 %)
9 diff
(98.9 %id)
DT218587 brain .a 3320 to 3831 1 to 512       512/512
(100 %)
1 diff
(99.9 %id)
R88023 brain .a 3386 to 3788 1 to 407       407/408
(99 %)
7 diff
(98.3 %id)
AA338374 brain .a 3415 to 3706 1 to 292       292/292
(100 %)
0 diff
(100 %id)
AW952748   .a 3416 to 3912 1 to 498       498/612
(81 %)
5 diff
(99.2 %id)
N94873 multiple sclerosis lesions .a 3440 to 3923 1 to 488       488/488
(100 %)
16 diff
(96.8 %id)
AA325143 brain, cerebellum .a 3443 to 3663 1 to 221       221/221
(100 %)
1 diff
(99.6 %id)
BP348275 brain .a 3452 to 4037 1 to 583       583/583
(100 %)
25 diff
(95.8 %id)
CR613722 Neuroblastoma Cot 25-normalized .a 3464 to 4702 1 to 1239       1239/1239
(100 %)
0 diff
(100 %id)
BX375754 Neuroblastoma Cot 25-normalized .a 3464 to 4521 1 to 1047       1047/1111
(94 %)
19 diff
(98.3 %id)
AW955321   .a 3473 to 4068 1 to 604       604/604
(100 %)
20 diff
(96.7 %id)
W28283 eye, retina .a 3492 to 3959 487 to 11       477/535
(89 %)
0 diff
(100 %id)
BF690470 melanotic melanoma, high MDR (cell line), skin .a 3532 to 4020 504 to 1       504/1028
(49 %)
22 diff
(97.9 %id)
R18083 whole brain .a 3546 to 3914 1 to 366       366/366
(100 %)
6 diff
(98.4 %id)
BF690379 melanotic melanoma, high MDR (cell line), skin .a 4004 to 4668 681 to 2       680/1013
(67 %)
0 diff
(100 %id)
N63548 multiple sclerosis lesions .a 4190 to 4730 547 to 1       547/550
(99 %)
15 diff
(97.3 %id)
H38453 brain .a 4255 to 4712 459 to 1       459/459
(100 %)
7 diff
(98.5 %id)
H15532 whole brain .a 4263 to 4646 487 to 104   AAA   384/391
(98 %)
0 diff
(100 %id)
R40487 whole brain .a 4268 to 4734 464 to 2       463/465
(99 %)
0 diff
(100 %id)
R42977 whole brain .a 4310 to 4641 332 to 1       332/332
(100 %)
3 diff
(99.1 %id)
H11023 whole brain .a 4336 to 4730 422 to 15   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 408/427
(95 %)
16 diff
(96.3 %id)
R87980 brain .a 4347 to 4706 365 to 1       365/365
(100 %)
12 diff
(96.8 %id)
AK295696 hippocampus .b 1 to 2581 1 to 2581 exact tiling clone,   2581/2581
(100 %)
2 diff
(100.0 %id)
DC333627 hippocampus .b 1 to 565 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
DC318808 brain .b 31 to 579 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
DC331157 hippocampus .b 40 to 612 1 to 576       576/576
(100 %)
3 diff
(99.5 %id)
DC334631 hippocampus .b 44 to 502 1 to 461       461/461
(100 %)
2 diff
(99.6 %id)
DC317950 amygdala .b 116 to 692 1 to 578       578/578
(100 %)
9 diff
(98.5 %id)
DC334274 hippocampus .b 130 to 696 1 to 567       567/567
(100 %)
0 diff
(100 %id)
DC342156 thalamus .b 140 to 690 1 to 551       551/551
(100 %)
0 diff
(100 %id)
DC342979 thalamus .b 140 to 709 1 to 570       570/570
(100 %)
0 diff
(100 %id)
BP214164 cerebrum .b 141 to 718 1 to 578       578/578
(100 %)
0 diff
(100 %id)
DC318241 amygdala .b 148 to 740 2 to 594       593/594
(99 %)
6 diff
(99.0 %id)
DC315791 amygdala .b 169 to 709 1 to 541       541/541
(100 %)
0 diff
(100 %id)
DC332673 hippocampus .b 169 to 729 1 to 561       561/561
(100 %)
0 diff
(100 %id)
DC342494 thalamus .b 169 to 739 1 to 571       571/571
(100 %)
1 diff
(99.9 %id)
DC334469 hippocampus .b 171 to 641 1 to 470       470/470
(100 %)
2 diff
(99.6 %id)
DC323506 brain .b 175 to 764 1 to 590       590/590
(100 %)
0 diff
(100 %id)
DC344401 thalamus .b 175 to 714 1 to 540       540/540
(100 %)
0 diff
(100 %id)
DA414706 thalamus .b 190 to 688 58 to 556   capped   499/555
(89 %)
7 diff
(98.8 %id)
DA398403 thalamus .b 220 to 674 116 to 570   capped   455/569
(79 %)
6 diff
(99.0 %id)
DA214366 brain .b 223 to 760 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
DA398293 thalamus .b 223 to 743 41 to 561   capped   521/560
(93 %)
7 diff
(98.8 %id)
DA415794 thalamus .b 223 to 767 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA248940 brain .b 236 to 818 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DA328486 hippocampus .b 237 to 801 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA249915 brain .b 243 to 830 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA237842 brain .b 251 to 822 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA226690 brain .b 254 to 806 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA228624 brain .b 254 to 829 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA315520 hippocampus .b 260 to 799 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
DA104460 cerebellum .b 264 to 821 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DA223350 brain .b 264 to 820 2 to 558   capped   557/559
(99 %)
2 diff
(99.7 %id)
DA228102 brain .b 264 to 827 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA316825 hippocampus .b 264 to 795 2 to 533   capped   532/532
(100 %)
1 diff
(99.9 %id)
DA335514 hippocampus .b 268 to 844 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA225587 brain .b 269 to 824 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA248223 brain .b 269 to 861 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA415276 thalamus .b 269 to 844 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA805276 brain .b 269 to 796 2 to 530   capped   529/529
(100 %)
1 diff
(99.9 %id)
DA410192 thalamus .b 270 to 819 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA094631 cerebellum .b 271 to 796 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
DA226448 brain .b 271 to 844 2 to 576   capped   566/575
(98 %)
5 diff
(99.2 %id)
DA398492 thalamus .b 271 to 823 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA097576 cerebellum .b 273 to 840 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA104271 cerebellum .b 294 to 780 2 to 489   capped   488/488
(100 %)
1 diff
(99.8 %id)
DA324592 hippocampus .b 294 to 760 2 to 468   capped   467/467
(100 %)
0 diff
(100 %id)
DA195166 amygdala .b 295 to 844 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA119946 cerebellum .b 314 to 870 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA123459 cerebellum .b 314 to 858 2 to 548   capped   538/547
(98 %)
5 diff
(99.1 %id)
DA322999 hippocampus .b 314 to 801 2 to 489   capped   488/488
(100 %)
0 diff
(100 %id)
DA119825 cerebellum .b 315 to 867 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA056661 cerebellum .b 318 to 844 2 to 528   capped   527/527
(100 %)
1 diff
(99.9 %id)
DA209788 brain .b 318 to 876 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DA316500 hippocampus .b 318 to 874 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DA247989 brain .b 327 to 909 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA313001 hippocampus .b 342 to 644 230 to 532   capped   303/531
(57 %)
6 diff
(98.9 %id)
DA247309 brain .b 343 to 907 27 to 591   capped   565/590
(95 %)
6 diff
(99.0 %id)
BM545383 brain, hippocampus .b 361 to 1376 20 to 1049       1028/1107
(92 %)
37 diff
(96.7 %id)
DA228016 brain .b 395 to 966 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA108965 cerebellum .b 434 to 1011 6 to 583   capped   578/582
(99 %)
1 diff
(99.9 %id)
DA395481 thalamus .b 436 to 1011 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA396740 thalamus .b 508 to 1055 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
AA323292 brain, cerebellum .b 533 to 902 1 to 371       371/371
(100 %)
2 diff
(99.5 %id)
DA112295 cerebellum .b 551 to 1125 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA232146 brain .b 567 to 1138 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA102109 cerebellum .b 611 to 1160 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DA399607 thalamus .b 683 to 1188 2 to 507   capped   506/506
(100 %)
1 diff
(99.9 %id)
DA242313 brain .b 835 to 1419 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA249135 brain .b 853 to 1442 2 to 591   capped   590/590
(100 %)
3 diff
(99.5 %id)
AI205059 schizophrenic brain S-11 frontal lobe .b 877 to 1277 1 to 401     Submitted on the opposite strand 401/401
(100 %)
4 diff
(99.1 %id)
DA101810 cerebellum .b 878 to 1377 2 to 504   capped   503/503
(100 %)
5 diff
(99.1 %id)
DA055338 cerebellum .b 954 to 1498 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
DA301062 hippocampus .b 1188 to 1739 2 to 553   tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
TI_1948141244   .b 1306 to 2446 1275 to 128       1148/1400
(82 %)
66 diff
(95.3 %id)
TI_1948140573   .b 1531 to 2446 1041 to 129       913/1296
(70 %)
22 diff
(98.4 %id)
TI_1948140905   .b 1531 to 2446 1043 to 128       916/1376
(66 %)
13 diff
(99.1 %id)
TI_1948141581   .b 1531 to 2446 1046 to 128       919/1363
(67 %)
17 diff
(98.8 %id)
BE702469 nervous_normal .b 1544 to 1886 1 to 344       344/355
(96 %)
14 diff
(96.1 %id)
DA126229 cerebellum .b 1558 to 2141 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
TI_1948140574   .b 1687 to 2446 907 to 136       772/1515
(50 %)
19 diff
(98.8 %id)
TI_1948141245   .b 1689 to 2446 901 to 141       761/1354
(56 %)
19 diff
(98.6 %id)
DB179229 kidney, tumor tissue .b 1702 to 2251 2 to 551   tiling clone, capped   550/550
(100 %)
0 diff
(100 %id)
DA261035 caudate nucleus .b 1704 to 2262 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DA769977 brain .b 1707 to 2286 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
AI003013 schizophrenic brain S-11 frontal lobe .b 1746 to 2072 1 to 327     Submitted on the opposite strand 327/327
(100 %)
2 diff
(99.4 %id)
BG770493 melanotic melanoma, high MDR (cell line), skin .b 1778 to 2028 1 to 251       251/251
(100 %)
1 diff
(99.7 %id)
TI_1948141582   .b 1815 to 2446 774 to 140       635/1431
(44 %)
13 diff
(99.1 %id)
DA292454 hippocampus .b 1841 to 2425 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA304470 hippocampus .b 1937 to 2506 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
BE382718 brain, neuroblastoma .b 1995 to 2509 1 to 522       522/736
(70 %)
16 diff
(97.9 %id)
BE261104 brain, neuroblastoma .b 1996 to 2550 1 to 573       573/820
(69 %)
55 diff
(93.3 %id)
DA793437 brain .b 2033 to 2552 2 to 521   capped   520/520
(100 %)
0 diff
(100 %id)
AA663569 schizophrenic brain S-11 frontal lobe .b 2034 to 2478 445 to 2       444/445
(99 %)
0 diff
(100 %id)
NM_014954.3   .c 1 to 4578 1 to 4578 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 4578/4578
(100 %)
0 diff
(100 %id)
DA093427 cerebellum .c 167 to 727 2 to 574   tiling clone, capped   570/573
(99 %)
6 diff
(99.0 %id)
DA237013 brain .c 184 to 754 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BC017259 Brain, neuroblastoma .c 194 to 3140 1 to 2945 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 2945/2945
(100 %)
3 diff
(99.9 %id)
BE262713 brain, neuroblastoma .c 194 to 1008 37 to 856       820/939
(87 %)
28 diff
(97.1 %id)
BE262715 brain, neuroblastoma .c 194 to 1008 38 to 851       814/976
(83 %)
28 diff
(97.2 %id)
BE263268 brain, neuroblastoma .c 282 to 657 1 to 381   available from MGC,   381/381
(100 %)
8 diff
(98.0 %id)
BE261606 brain, neuroblastoma .c 282 to 843 1 to 562       562/568
(98 %)
3 diff
(99.5 %id)
BE312699 brain, neuroblastoma .c 282 to 1017 1 to 727       729/763
(95 %)
42 diff
(94.5 %id)
BC009843 Lung, small cell carcinoma .c 340 to 2230 1 to 1889   tiling clone, available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1889/1934
(97 %)
4 diff
(99.8 %id)
BE794564 lung, small cell carcinoma .c 386 to 1115 29 to 747   available from MGC,   719/970
(74 %)
18 diff
(98.2 %id)
CV029089 mixed .c 409 to 995 1 to 587       587/587
(100 %)
0 diff
(100 %id)
TI_1948140571   .c 409 to 1006 130 to 726       597/1335
(44 %)
11 diff
(99.2 %id)
TI_1948140572   .c 409 to 1277 129 to 998       870/1280
(67 %)
28 diff
(97.9 %id)
TI_1948140903   .c 409 to 841 128 to 560       433/1358
(31 %)
11 diff
(99.2 %id)
TI_1948140904   .c 409 to 1337 133 to 1059       927/1336
(69 %)
28 diff
(98.0 %id)
TI_1948141242   .c 409 to 1046 125 to 765       641/1360
(47 %)
16 diff
(98.9 %id)
TI_1948141243   .c 409 to 1341 128 to 1057   AAA   928/1304
(71 %)
20 diff
(98.5 %id)
TI_1948141579   .c 409 to 1008 125 to 722       598/1395
(42 %)
13 diff
(99.1 %id)
TI_1948141580   .c 409 to 1348 129 to 1066       938/1300
(72 %)
28 diff
(97.9 %id)
BC002605 Brain, neuroblastoma .d 1 to 1965 1 to 1963 I603K tiling clone, available from MGC, AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 1963/1968
(99 %)
4 diff
(99.8 %id)
BX647281 human retina .e 1 to 5181 1 to 5180 W11R tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 5180/5180
(100 %)
3 diff
(100.0 %id)
DA118118 cerebellum .e 4053 to 4600 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
AA319224 adrenal gland .e 4341 to 4622 1 to 282       282/282
(100 %)
1 diff
(99.7 %id)
AW952151   .e 4342 to 4727 1 to 387       387/387
(100 %)
12 diff
(96.9 %id)
BF954198 nervous_normal .e 4352 to 4602 1 to 253       253/253
(100 %)
5 diff
(98.1 %id)
BE700355 nervous_normal .e 4372 to 4727 354 to 1       354/354
(100 %)
17 diff
(95.2 %id)
H85702 eye, retina .e 4398 to 4751 13 to 372       360/379
(94 %)
8 diff
(97.9 %id)
BX092110 eye, retina .e 4399 to 5087 1 to 690   tiling clone,   690/690
(100 %)
1 diff
(99.9 %id)
BF338427 brain, glioblastoma with EGFR amplification .e 4482 to 5181 1 to 698   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 698/698
(100 %)
9 diff
(98.8 %id)
N54215 multiple sclerosis lesions .e 4536 to 4683 1 to 148       148/148
(100 %)
0 diff
(100 %id)
H46380 brain .e 4560 to 4998 1 to 443       443/443
(100 %)
4 diff
(99.1 %id)
TI_151776630   .e 4589 to 4990 90 to 494       405/805
(50 %)
4 diff
(99.6 %id)
BM716888 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 4590 to 5184 1 to 595   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 595/595
(100 %)
0 diff
(100 %id)
BE857186 brain, glioblastoma (pooled) .e 4618 to 5181 564 to 1       564/564
(100 %)
0 diff
(100 %id)
AA988953 carcinoid, lung .e 4669 to 5185 516 to 1       516/516
(100 %)
1 diff
(99.9 %id)
BM726103 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 4674 to 5184 1 to 511   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 511/511
(100 %)
1 diff
(99.9 %id)
BM682536 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 4713 to 5184 487 to 16   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 472/472
(100 %)
1 diff
(99.8 %id)
H48172 brain .e 4722 to 5155 429 to 1       429/448
(95 %)
9 diff
(98.0 %id)
TI_153991202   .e 4724 to 5181 558 to 101   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 458/459
(99 %)
9 diff
(98.1 %id)
H41422 brain .e 4743 to 5175 438 to 8       431/438
(98 %)
0 diff
(100 %id)
AA976078 carcinoid, lung .e 4764 to 5183 420 to 1       420/420
(100 %)
0 diff
(100 %id)
H41541 brain .e 4775 to 5167 394 to 1       394/396
(99 %)
4 diff
(99.0 %id)
N51089 multiple sclerosis lesions .e 4785 to 5184 400 to 1       400/400
(100 %)
2 diff
(99.5 %id)
AW904319 nervous_normal .e 4791 to 5093 303 to 2       302/308
(98 %)
0 diff
(100 %id)
AV726215 hypothalamus .e 4831 to 5184 1 to 354   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 354/354
(100 %)
1 diff
(99.8 %id)
H84794 eye, retina .e 4847 to 5156 312 to 1       312/312
(100 %)
2 diff
(99.4 %id)
AI421373 brain, glioblastoma (pooled) .e 4848 to 5181 334 to 1       334/334
(100 %)
0 diff
(100 %id)
AI423964 brain, glioblastoma (pooled) .e 4853 to 5184 355 to 24   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 332/332
(100 %)
7 diff
(97.9 %id)
AW904279 nervous_normal .e 4861 to 5031 174 to 1       174/181
(96 %)
11 diff
(94.0 %id)
BE502996 carcinoid, lung .e 4865 to 5188 326 to 3       324/326
(99 %)
0 diff
(100 %id)
AI208504   .e 4870 to 5184 336 to 21   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 316/316
(100 %)
2 diff
(99.4 %id)
BU738474 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 4871 to 5184 329 to 16   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 314/314
(100 %)
0 diff
(100 %id)
AW207073   .e 4895 to 5181 304 to 18   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 287/287
(100 %)
0 diff
(100 %id)
AA338373 brain .e 4917 to 5184 268 to 1       268/268
(100 %)
0 diff
(100 %id)
BE857337 brain, glioblastoma (pooled) .e 4951 to 5176 231 to 6       226/231
(97 %)
0 diff
(100 %id)
DR978443 brain .e 5119 to 5188 1 to 69     Submitted on the opposite strand 69/72
(95 %)
6 diff
(91.7 %id)
DB068468 testis .f 1 to 535 2 to 536   tiling clone, capped   535/535
(100 %)
0 diff
(100 %id)
DB456228 testis .f 10 to 479 1 to 470       470/470
(100 %)
0 diff
(100 %id)
DB339939 testis .f 3307 to 3847 543 to 1   tiling clone,   543/543
(100 %)
4 diff
(99.3 %id)
DA229785 brain .g 1 to 660 2 to 661 exact tiling clone, capped   660/660
(100 %)
0 diff
(100 %id)
DR001406 fetal brain .h 1 to 630 1 to 634   tiling clone,   634/634
(100 %)
7 diff
(98.9 %id)
DC309683 cerebellum .h 130 to 698 1 to 570       570/570
(100 %)
1 diff
(99.9 %id)
DC342019 thalamus .h 249 to 825 1 to 577 exact tiling clone,   577/577
(100 %)
0 diff
(100 %id)
BP213554 cerebrum .i 1 to 562 1 to 562   tiling clone,   562/564
(99 %)
2 diff
(99.7 %id)
DA182890 amygdala .i 131 to 639 2 to 510   capped   509/509
(100 %)
0 diff
(100 %id)
DA223632 brain .i 136 to 670 2 to 536 A91S tiling clone, capped   535/535
(100 %)
1 diff
(99.9 %id)
DA193372 amygdala .j 1 to 599 2 to 600   capped   599/599
(100 %)
1 diff
(99.9 %id)
DA218504 brain .j 1 to 470 2 to 471   tiling clone, capped   470/475
(98 %)
1 diff
(99.8 %id)
DA230228 brain .j 4 to 568 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DA325398 hippocampus .j 9 to 462 11 to 465   capped   455/455
(100 %)
1 diff
(99.8 %id)
DA094577 cerebellum .j 30 to 599 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA238789 brain .j 30 to 614 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA106941 cerebellum .j 36 to 617 2 to 583   capped   582/582
(100 %)
1 diff
(99.9 %id)
DA239083 brain .j 84 to 681 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
DA226533 brain .j 106 to 702 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DA110841 cerebellum .j 115 to 706 2 to 593 exact tiling clone, capped   592/592
(100 %)
0 diff
(100 %id)
DA219592 brain .j 121 to 686 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA405672 thalamus .k 1 to 568 2 to 569 Q79R tiling clone, capped   568/568
(100 %)
1 diff
(99.9 %id)
DA235869 brain .l 1 to 561 2 to 562 exact tiling clone, capped   561/561
(100 %)
0 diff
(100 %id)
DA217523 brain .m 1 to 543 2 to 548 L25T Q26A A27P W29R S30L ... tiling clone, capped   543/547
(99 %)
0 diff
(100 %id)
DA235018 brain .n -9 to 582 2 to 593   tiling clone, capped   592/592
(100 %)
0 diff
(100 %id)
DA313892 hippocampus .n -9 to 537 2 to 548   capped   547/547
(100 %)
2 diff
(99.7 %id)
DA334572 hippocampus .n -9 to 561 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA335855 hippocampus .n -9 to 582 2 to 593   capped   592/592
(100 %)
0 diff
(100 %id)
DA330559 hippocampus .n -8 to 541 22 to 571   capped   550/550
(100 %)
1 diff
(99.9 %id)
BP362054 thalamus .n 1 to 581 7 to 587       587/587
(100 %)
3 diff
(99.5 %id)
DA110927 cerebellum .n 1 to 580 7 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DA330292 hippocampus .n 1 to 524 7 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DA227938 brain .n 1 to 592 2 to 593 exact tiling clone, capped   592/595
(99 %)
2 diff
(99.7 %id)
DA249582 brain .n 1 to 561 2 to 562   capped   561/569
(98 %)
0 diff
(100 %id)
DA225345 brain .n 26 to 591 2 to 568 exact capped   567/567
(100 %)
1 diff
(99.9 %id)
DA231647 brain .n 35 to 548 2 to 516   capped   515/515
(100 %)
1 diff
(99.9 %id)
BP309695 brain .o 1 to 578 2 to 579 exact tiling clone,   579/582
(99 %)
1 diff
(99.9 %id)
DB095645 testis .p 1 to 567 2 to 568 exact tiling clone, capped   567/567
(100 %)
2 diff
(99.7 %id)
DC322126 brain .q 1 to 486 3 to 488   tiling clone,   488/488
(100 %)
0 diff
(100 %id)
DA103652 cerebellum .q 416 to 961 2 to 547 exact tiling clone, capped   546/547
(99 %)
2 diff
(99.7 %id)
DA225389 brain .r 1 to 538 2 to 540 exact tiling clone, capped   539/539
(100 %)
1 diff
(99.9 %id)
DA410902 thalamus .s 1 to 498 2 to 499   tiling clone, capped   498/533
(93 %)
1 diff
(99.9 %id)
DA332550 hippocampus .s 30 to 608 2 to 580 exact tiling clone, capped   579/579
(100 %)
0 diff
(100 %id)
DA111710 cerebellum .t 1 to 594 2 to 595   tiling clone, capped   594/594
(100 %)
1 diff
(99.9 %id)
DC334611 hippocampus .u 1 to 560 2 to 561 exact tiling clone,   561/562
(99 %)
1 diff
(99.9 %id)
DA406544 thalamus .va 1 to 556 2 to 557 M14T tiling clone, capped   556/556
(100 %)
2 diff
(99.7 %id)
DA108635 cerebellum .vb-u 1 to 544 2 to 547 exact tiling clone, capped   546/546
(100 %)
1 diff
(99.9 %id)
DW438708 Liver .vc-u 1 to 228 17 to 244 exact tiling clone,   228/244
(93 %)
13 diff
(94.7 %id)
DA074986 cerebellum Gene RPH3A, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA092356 cerebellum Gene RPH3A, variant not shown       capped      
DA100663 cerebellum Gene RPH3A, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA117591 cerebellum Gene RPH3A, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA125561 cerebellum Gene RPH3A, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA184460 amygdala Gene RPH3A, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA193531 amygdala Gene RPH3A, variant not shown       capped This clone was ignored    
DA212644 brain Gene RPH3A, variant not shown       capped This clone was ignored    
DA215669 brain Gene RPH3A, variant not shown       capped Suspected internal deletion, this clone was ignored    
DA234254 brain Gene RPH3A, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB307696 hippocampus Gene RPH3A, variant not shown              
DA292472 hippocampus Gene RPH3A, variant not shown       capped      
BP213969 cerebrum Gene RPH3A, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb-u, .vc-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI