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Gene C8orf84TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
106 supporting clones for gene C8orf84 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
TI_57174971   .a 1 to 716 21 to 745   tiling clone,   725/748
(96 %)
16 diff
(97.9 %id)
BI828242 brain, medulla .a 8 to 716 1 to 718       718/721
(99 %)
18 diff
(97.6 %id)
BC042877 Brain, adult medulla .a 9 to 1329 1 to 1321 exact tiling clone, available from MGC, AAA   1321/1321
(100 %)
0 diff
(100 %id)
NM_153225.3   .a 9 to 3812 1 to 3804 exact RefSeq,   3804/3804
(100 %)
3 diff
(100.0 %id)
TI_44350015   .a 52 to 672 113 to 739       627/872
(71 %)
27 diff
(97.0 %id)
BI561407 testis .a 54 to 570 1 to 519       519/758
(68 %)
12 diff
(98.5 %id)
AL545906 placenta, Placenta Cot 25-normalized .a 102 to 1031 1 to 930 G129A Q130R D131T C132A H134T ...     930/930
(100 %)
6 diff
(99.4 %id)
AK292970 trachea .a 109 to 1271 1 to 1163 W186R     1163/1163
(100 %)
1 diff
(100.0 %id)
CA396567 eye, RPE/choroid .a 110 to 652 1 to 543       543/543
(100 %)
4 diff
(99.3 %id)
DB233245 trachea .a 110 to 681 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
AY040546 RPE/choroid .a 112 to 1179 1 to 1069 F58L W186R     1069/1069
(100 %)
5 diff
(99.6 %id)
CR594707 Placenta Cot 25-normalized .a 121 to 1286 1 to 1166 exact     1166/1166
(100 %)
0 diff
(100 %id)
AL546464 placenta, Placenta Cot 25-normalized .a 121 to 653 1 to 532   fully sequenced,   532/532
(100 %)
8 diff
(98.5 %id)
BU838566 dorsal root ganglia .a 125 to 897 25 to 809       785/1029
(76 %)
41 diff
(96.1 %id)
CB991835 placenta, pre-eclamptic placenta .a 127 to 617 27 to 523       497/885
(56 %)
25 diff
(97.2 %id)
TI_57149707   .a 137 to 812 21 to 697       677/697
(97 %)
9 diff
(98.8 %id)
BI764857 pooled colon, kidney, stomach .a 142 to 812 1 to 671       671/671
(100 %)
5 diff
(99.3 %id)
AL543459.
matches multiple genes
placenta, Placenta Cot 25-normalized .a 155 to 1122 1 to 963 V96A G129P Q130G D131L C132R ...   also hits gene SREBF2 963/1015
(94 %)
18 diff
(98.3 %id)
BX344502   .a 155 to 1054 1 to 899 A10X L11C S12R R13G L14C ...     899/899
(100 %)
4 diff
(99.6 %id)
DT220650 brain .a 157 to 335 1 to 179       179/179
(100 %)
4 diff
(97.8 %id)
CR592835 Placenta Cot 25-normalized .a 183 to 1283 1 to 1101 exact     1101/1101
(100 %)
0 diff
(100 %id)
CR616775 Placenta Cot 25-normalized .a 183 to 1310 1 to 1128 exact     1128/1128
(100 %)
0 diff
(100 %id)
BX334793 Placenta Cot 25-normalized .a 183 to 1324 1 to 1135 C9X L11V S12A R13A L14V ...     1135/1135
(100 %)
16 diff
(98.6 %id)
BX324903 Placenta Cot 25-normalized .a 183 to 983 1 to 797       797/797
(100 %)
4 diff
(99.5 %id)
BX382762 Placenta Cot 25-normalized .a 183 to 1258 1 to 1066 A10R L11C S12R R13G L14C ...     1066/1109
(96 %)
29 diff
(97.4 %id)
AL554894 placenta, Placenta Cot 25-normalized .a 183 to 1236 1 to 1042 L11V S12A R13A L14V W15A ...     1042/1063
(98 %)
17 diff
(98.5 %id)
BX501928 Liver .a 351 to 610 1 to 260       260/260
(100 %)
4 diff
(98.5 %id)
BP385219 pancreatic islet .a 388 to 769 383 to 1       383/385
(99 %)
1 diff
(99.8 %id)
AL546437 placenta, Placenta Cot 25-normalized .a 592 to 1286 695 to 1   fully sequenced,   695/695
(100 %)
0 diff
(100 %id)
CB267942 adipose .a 1313 to 1870 1 to 559   tiling clone,   559/559
(100 %)
1 diff
(99.9 %id)
BX334791 Placenta Cot 25-normalized .a 1364 to 2413 1036 to 1       1036/1036
(100 %)
33 diff
(96.9 %id)
AL080094 brain .a 1397 to 2447 1 to 1050   available from DKFZ, AAA   1050/1050
(100 %)
6 diff
(99.5 %id)
AW081542 colon, moderately differentiated adenocarcinoma .a 1398 to 1811 426 to 12       415/445
(93 %)
0 diff
(100 %id)
AL036618 brain .a 1404 to 1857 1 to 459       459/460
(99 %)
11 diff
(97.7 %id)
AI565404 Kidney .a 1486 to 1812 327 to 1       327/327
(100 %)
0 diff
(100 %id)
AL571447 placenta, Placenta Cot 25-normalized .a 1491 to 2398 909 to 1   tiling clone,   909/909
(100 %)
4 diff
(99.6 %id)
AW954640   .a 1532 to 2243 722 to 11     Submitted on the opposite strand 712/722
(98 %)
0 diff
(100 %id)
BX398152 Placenta Cot 25-normalized .a 1549 to 2396 863 to 1       863/863
(100 %)
62 diff
(92.9 %id)
BG028662 Bone, osteosarcoma, cell line .a 1562 to 2344 1 to 780   AAA   780/839
(92 %)
22 diff
(97.4 %id)
AI697978 carcinoid, lung .a 1621 to 2155 1 to 535     Submitted on the opposite strand 535/535
(100 %)
4 diff
(99.3 %id)
BE932755 head_neck .a 1662 to 1985 339 to 19       321/339
(94 %)
0 diff
(100 %id)
CK001069 brain/CNS, Bulk tissue from Human Spinal cord .a 1679 to 2328 1 to 638       638/641
(99 %)
18 diff
(97.2 %id)
AI700984 carcinoid, lung .a 1697 to 1956 1 to 260     Submitted on the opposite strand 260/260
(100 %)
0 diff
(100 %id)
R20224 whole brain .a 1781 to 2242 472 to 1     Submitted on the opposite strand 472/473
(99 %)
16 diff
(96.7 %id)
H14510 whole brain .a 1816 to 2242 432 to 1     Submitted on the opposite strand 432/433
(99 %)
12 diff
(97.3 %id)
BX373534 Placenta Cot 25-normalized .a 1848 to 2389 556 to 12       545/885
(61 %)
0 diff
(100 %id)
AI953728 pooled germ cell tumors .a 1883 to 2419 548 to 12       537/548
(97 %)
0 diff
(100 %id)
T33854 brain .a 1886 to 2243 373 to 16     Submitted on the opposite strand 358/373
(95 %)
0 diff
(100 %id)
AA939100 pooled germ cell tumors .a 1909 to 2430 522 to 1       522/522
(100 %)
0 diff
(100 %id)
Z45326 brain, total brain .a 1930 to 2243 314 to 1       314/314
(100 %)
0 diff
(100 %id)
F08492 brain, total brain .a 1934 to 2243 310 to 1       310/310
(100 %)
0 diff
(100 %id)
AI810588 Prostate .a 1952 to 2450 524 to 26   AAA   499/499
(100 %)
18 diff
(96.4 %id)
AF087977   .a 1959 to 2428 1 to 470   AAA   470/470
(100 %)
0 diff
(100 %id)
H88831 cochlea, ear .a 1960 to 2340 1 to 391       391/396
(98 %)
14 diff
(96.5 %id)
BG399214 Kidney .a 1978 to 2416 1 to 440       440/441
(99 %)
2 diff
(99.6 %id)
BG534222 lung .a 1982 to 2462 1 to 476   AAA   476/476
(100 %)
6 diff
(98.8 %id)
H88832 cochlea, ear .a 2003 to 2418 417 to 1       417/422
(98 %)
3 diff
(99.3 %id)
D62676   .a 2036 to 2443 1 to 407       407/407
(100 %)
1 diff
(99.8 %id)
AA167311.
matches multiple genes
  .a 2045 to 2457 414 to 2     also hits gene NAB2 413/414
(99 %)
0 diff
(100 %id)
AA922441 pooled germ cell tumors .a 2050 to 2430 383 to 3       381/383
(99 %)
0 diff
(100 %id)
AL569959.
matches multiple genes
placenta, Placenta Cot 25-normalized .a 2087 to 3074 1003 to 20     also hits gene SREBF2 984/1015
(96 %)
0 diff
(100 %id)
AI537877 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 2133 to 2452 326 to 7       320/326
(98 %)
0 diff
(100 %id)
BX344501   .a 2150 to 3086 937 to 1   tiling clone,   937/937
(100 %)
2 diff
(99.8 %id)
AW130538 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 2215 to 2450 257 to 20   AAA   238/238
(100 %)
9 diff
(96.3 %id)
BX471774   .a 2321 to 2911 1 to 591   tiling clone,   591/591
(100 %)
3 diff
(99.5 %id)
AV720106 corresponding non cancerous liver tissue .a 2369 to 2902 1 to 533       533/535
(99 %)
9 diff
(98.4 %id)
AA653203   .a 2737 to 3133 397 to 1   tiling clone,   397/397
(100 %)
1 diff
(99.8 %id)
CD511646 Blood vessels - aorta, basilar and artery .a 2779 to 3051 1 to 273       273/300
(91 %)
7 diff
(97.7 %id)
BQ024333 placenta .a 2830 to 3132 321 to 19   AAA   303/303
(100 %)
0 diff
(100 %id)
BE968773 heart .a 2840 to 3460 1 to 624   tiling clone,   624/625
(99 %)
11 diff
(98.3 %id)
AI698180 carcinoid, lung .a 3277 to 3809 536 to 4   tiling clone,   533/536
(99 %)
0 diff
(100 %id)
AI700981 carcinoid, lung .a 3333 to 3802 480 to 11   tiling clone, AAA   470/470
(100 %)
5 diff
(99.0 %id)
AK097340 stomach .b 1 to 1971 2 to 1972 exact tiling clone, available from FLJ,   1972/1972
(100 %)
2 diff
(99.9 %id)
DA968145 stomach .b 1 to 567 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BX324902 Placenta Cot 25-normalized .b 605 to 1445 841 to 1   tiling clone,   841/841
(100 %)
1 diff
(99.9 %id)
CB046312 2 pooled tumors (clear cell type), Kidney .b 817 to 1477 1 to 660       660/660
(100 %)
6 diff
(99.1 %id)
BG433871 Kidney .b 822 to 1447 1 to 636       636/1013
(62 %)
20 diff
(98.1 %id)
AA369665 placenta .b 827 to 1092 1 to 266       266/267
(99 %)
3 diff
(98.9 %id)
AW135859   .b 847 to 1203 374 to 18   AAA   357/357
(100 %)
1 diff
(99.8 %id)
AA330606 embryo .b 899 to 1205 1 to 311       311/319
(97 %)
5 diff
(98.5 %id)
AA249220   .b 918 to 1209 1 to 297       297/300
(99 %)
21 diff
(93.0 %id)
BX336239 Placenta Cot 25-normalized .b 922 to 1912 987 to 1       987/998
(98 %)
17 diff
(98.3 %id)
BQ448226 Knee, Osteoarthritic Cartilage .b 931 to 1654 741 to 19   AAA   723/723
(100 %)
1 diff
(99.9 %id)
AW662373 colon, moderately-differentiated adenocarcinoma .b 950 to 1491 542 to 1       542/542
(100 %)
6 diff
(98.9 %id)
BE695858 colon .b 960 to 1481 1 to 522       522/522
(100 %)
5 diff
(99.1 %id)
BX089861   .b 1021 to 1489 1 to 469   AAA   469/469
(100 %)
0 diff
(100 %id)
CR737753   .b 1021 to 1489 1 to 469   AAA   469/469
(100 %)
0 diff
(100 %id)
AI860820 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 1034 to 1485 462 to 10       453/462
(98 %)
0 diff
(100 %id)
BX352099 Placenta Cot 25-normalized .b 1044 to 1962 925 to 1       925/925
(100 %)
38 diff
(95.9 %id)
TI_154048671   .b 1066 to 1971 985 to 99   AAA   887/982
(90 %)
22 diff
(97.8 %id)
BX382309 Placenta Cot 25-normalized .b 1083 to 1912 829 to 1       829/852
(97 %)
8 diff
(99.1 %id)
AI217135   .b 1117 to 1487 382 to 12   AAA   371/371
(100 %)
0 diff
(100 %id)
AA620812   .b 1118 to 1331 214 to 1       214/214
(100 %)
1 diff
(99.6 %id)
BE550015 carcinoid, lung .b 1125 to 1662 1 to 538     Submitted on the opposite strand 538/538
(100 %)
1 diff
(99.9 %id)
AW301175 Kidney .b 1128 to 1573 1 to 445     Submitted on the opposite strand 445/445
(100 %)
1 diff
(99.8 %id)
AI458328 carcinoid, lung .b 1129 to 1676 1 to 548     Submitted on the opposite strand 548/548
(100 %)
0 diff
(100 %id)
AI693875 carcinoid, lung .b 1129 to 1668 1 to 540     Submitted on the opposite strand 540/540
(100 %)
2 diff
(99.7 %id)
AW662355 colon, moderately-differentiated adenocarcinoma .b 1185 to 1490 308 to 3       306/308
(99 %)
0 diff
(100 %id)
BF588722 colon, colon tumor, RER+ .b 1197 to 1489 292 to 1       292/292
(100 %)
7 diff
(97.7 %id)
CA413403 Knee, Osteoarthritic Cartilage .b 1256 to 1971 733 to 19   tiling clone, AAA   715/715
(100 %)
1 diff
(99.9 %id)
BQ182470 Knee, Osteoarthritic Cartilage .b 1259 to 1971 731 to 19   AAA   713/713
(100 %)
2 diff
(99.8 %id)
FN098109 breast carcinoma .b 1296 to 1384 93 to 4     Submitted on the opposite strand 90/93
(96 %)
0 diff
(100 %id)
AA782946   .b 1317 to 1487 174 to 4       171/174
(98 %)
0 diff
(100 %id)
AA595101 Prostate, prostate tumor .b 1478 to 1966 512 to 25   AAA   488/488
(100 %)
2 diff
(99.6 %id)
DB334553 stomach .b 1599 to 1971 375 to 1       375/375
(100 %)
3 diff
(99.2 %id)
AL697631 human skeletal muscle Gene C8orf84, variant not shown         Suspected internal deletion, this clone was ignored    
AV646510 corresponding non cancerous liver tissue Gene C8orf84, variant not shown         This clone was ignored    
AV646779 corresponding non cancerous liver tissue Gene C8orf84, variant not shown         This clone was ignored    
AV719840 corresponding non cancerous liver tissue Gene C8orf84, variant not shown         This clone was ignored    
AV646816 corresponding non cancerous liver tissue Gene C8orf84, variant not shown         This clone was ignored    
AV719400 corresponding non cancerous liver tissue Gene C8orf84, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C