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Gene RPA3TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
321 supporting clones for gene RPA3 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AA907925 pooled .a 1 to 461 469 to -1 exact tiling clone,   466/469
(99 %)
0 diff
(100 %id)
AI219692 pooled .a 75 to 461 390 to 3       388/391
(99 %)
1 diff
(99.8 %id)
CN396155 embryonic stem cells, DMSO-treated H9 cellline .b 1 to 294 1 to 294   tiling clone,   294/294
(100 %)
4 diff
(98.7 %id)
BU633410 cell lines, Chondrosarcoma .b 169 to 850 700 to 19 exact tiling clone, AAA   682/682
(100 %)
0 diff
(100 %id)
DA682850   .b 346 to 1136 2 to 788 exact capped   787/787
(100 %)
7 diff
(99.2 %id)
DB477886 hippocampus .b 366 to 859 1 to 508 D3E Q19S F20I I21H D22R ...     483/509
(94 %)
20 diff
(96.1 %id)
BU537145 mixed (pool of 40 RNAs) .b 366 to 853 1 to 490 K88X     490/494
(99 %)
3 diff
(99.4 %id)
DA535542 heart .b 367 to 967 2 to 603 L31X E32G I34D H35S P36S ... capped   602/602
(100 %)
2 diff
(99.7 %id)
BF218248 brain, glioblastoma .b 367 to 859 1 to 490 I66M L80C C81V T82H S83L ...     490/898
(54 %)
11 diff
(98.8 %id)
CD249788 embryonic stem cells, WA01, passage 38 .b 369 to 836 22 to 489 exact AAA   466/489
(95 %)
6 diff
(98.8 %id)
BI603022 brain, hypothalamus .b 369 to 1205 1 to 838 exact     838/838
(100 %)
30 diff
(96.5 %id)
BU537373 mixed (pool of 40 RNAs) .b 369 to 830 1 to 464 exact AAA   464/464
(100 %)
2 diff
(99.6 %id)
CD174194 embryonic stem cells, WA01, passage 38 .b 370 to 838 23 to 491 exact     467/513
(91 %)
9 diff
(98.3 %id)
BC005264 Kidney, hypernephroma .b 372 to 857 1 to 486 exact available from MGC, AAA   486/486
(100 %)
1 diff
(99.8 %id)
CD701145 normal nasopharynx .b 372 to 748 35 to 417       381/417
(91 %)
11 diff
(97.4 %id)
BP228629 brain .b 372 to 950 1 to 582 E32G I34D H35S P36S T37P ...     582/582
(100 %)
4 diff
(99.4 %id)
DB465198 hippocampus .b 372 to 801 1 to 430 exact     430/430
(100 %)
0 diff
(100 %id)
DB478481 hippocampus .b 372 to 815 1 to 444 exact     444/444
(100 %)
0 diff
(100 %id)
BU927982 mixed (pool of 40 RNAs) .b 372 to 1063 1 to 695 exact     695/696
(99 %)
4 diff
(99.5 %id)
TI_45215775   .b 372 to 1205 86 to 918 exact     833/918
(90 %)
33 diff
(96.5 %id)
DB115021 thymus .b 372 to 911 2 to 541 exact capped   540/540
(100 %)
0 diff
(100 %id)
BP369492 testis .b 372 to 852 1 to 487 V28C G29R R30A L31G E32L ... AAA   485/487
(99 %)
9 diff
(98.2 %id)
DA200145 brain .b 373 to 947 2 to 576 exact capped   575/575
(100 %)
1 diff
(99.9 %id)
DA302122 hippocampus .b 373 to 845 2 to 475 L31X E32G I34D H35S P36S ... capped   474/474
(100 %)
1 diff
(99.8 %id)
DA364083 subthalamic nucleus .b 373 to 938 2 to 567 exact capped   566/566
(100 %)
0 diff
(100 %id)
DA502585 brain .b 373 to 927 9 to 564 L31X E32G I34D H35S P36S ... capped   556/556
(100 %)
1 diff
(99.9 %id)
DA520984 brain .b 373 to 937 2 to 566 exact capped   565/565
(100 %)
1 diff
(99.9 %id)
DA585728 lung .b 373 to 979 2 to 608 exact capped   607/607
(100 %)
0 diff
(100 %id)
BF795585 lymph, lymphoma, cell line .b 373 to 1000 1 to 644 M16Y L17A A18S Q19S F20I ...     644/915
(70 %)
27 diff
(97.1 %id)
BG569464 Liver .b 373 to 857 1 to 487 V25A     487/846
(57 %)
4 diff
(99.6 %id)
DA953313 Spleen .b 373 to 932 2 to 562 R11Q I12H N13Q A14R G15R ... capped   561/561
(100 %)
1 diff
(99.9 %id)
DB108693 thymus .b 373 to 957 2 to 586 exact capped   585/585
(100 %)
0 diff
(100 %id)
DA062379 cerebellum .b 374 to 943 2 to 571 exact capped   570/570
(100 %)
1 diff
(99.9 %id)
DB469772 hippocampus .b 374 to 824 1 to 453 exact     453/453
(100 %)
3 diff
(99.4 %id)
DA058677 cerebellum .b 376 to 943 2 to 569 exact capped   568/568
(100 %)
1 diff
(99.9 %id)
DA205455 brain .b 377 to 964 2 to 589 exact capped   588/588
(100 %)
0 diff
(100 %id)
BI836443 pooled pancreas and spleen .b 380 to 981 1 to 604 F41Y I79S C81V T82Y S83I ...     604/604
(100 %)
10 diff
(98.4 %id)
TI_57162604   .b 380 to 981 30 to 633 F41Y I79S C81V T82Y S83I ...     602/633
(95 %)
16 diff
(97.5 %id)
BG475430 melanotic melanoma, skin .b 381 to 836 1 to 458 exact AAA   458/458
(100 %)
1 diff
(99.8 %id)
CN396157 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 382 to 855 1 to 474 exact     474/474
(100 %)
0 diff
(100 %id)
TI_57165567   .b 382 to 1219 28 to 863 exact     834/863
(96 %)
14 diff
(98.4 %id)
BG770170 melanotic melanoma, high MDR (cell line), skin .b 383 to 858 1 to 476 exact AAA   476/476
(100 %)
0 diff
(100 %id)
DW407801 Liver .b 386 to 848 6 to 468 F41S     461/468
(98 %)
8 diff
(98.3 %id)
AA767126 germinal center B cell .b 386 to 836 471 to 21 V2W D3N D6Y AAA   451/451
(100 %)
5 diff
(98.9 %id)
AI417050 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 386 to 1065 678 to 2 V2X D3I M4W M5X D6C ...     677/678
(99 %)
12 diff
(98.3 %id)
L07493   .b 386 to 1066 1 to 680 exact AAA   680/680
(100 %)
4 diff
(99.5 %id)
BI837475 pooled pancreas and spleen .b 387 to 1219 1 to 831 exact     831/831
(100 %)
10 diff
(98.8 %id)
AV712432   .b 388 to 799 12 to 432 I12S N100K E101W A102K V103X ...     365/432
(84 %)
18 diff
(95.9 %id)
DN992692 brain, whole brain .b 388 to 1106 9 to 726 exact     716/728
(98 %)
11 diff
(98.5 %id)
AA731398 germinal center B cell .b 389 to 852 491 to 27 V2G S10W A14R G15R M16H ... AAA   465/467
(99 %)
10 diff
(97.9 %id)
CB161679 Liver .b 390 to 962 1 to 573 exact     573/573
(100 %)
0 diff
(100 %id)
BF030135 hypernephroma, Kidney .b 391 to 856 1 to 466 exact AAA   466/466
(100 %)
0 diff
(100 %id)
BG716662 brain, hypothalamus .b 391 to 1162 1 to 770 I66X G116R I117D     770/774
(99 %)
13 diff
(98.4 %id)
BI596405 brain, hypothalamus .b 391 to 967 1 to 579 exact     579/579
(100 %)
3 diff
(99.5 %id)
BM907148 large cell carcinoma, lung .b 391 to 1065 1 to 675 exact     675/1033
(65 %)
1 diff
(100.0 %id)
BE788620 large cell carcinoma, lung .b 392 to 857 1 to 466 exact     466/885
(52 %)
1 diff
(99.9 %id)
AA946979 2 pooled tumors (clear cell type), Kidney .b 394 to 842 454 to 7 V2W D3T M4*     448/454
(98 %)
6 diff
(98.7 %id)
BU564814 mixed (pool of 40 RNAs) .b 394 to 865 1 to 474 exact     474/474
(100 %)
1 diff
(99.8 %id)
TI_45209263   .b 394 to 967 91 to 664 exact     574/664
(86 %)
6 diff
(99.1 %id)
DA153731 amygdala .b 395 to 964 2 to 571 exact capped   570/570
(100 %)
0 diff
(100 %id)
DA303578 hippocampus .b 395 to 994 2 to 601 exact capped   600/600
(100 %)
0 diff
(100 %id)
DN913057   .b 395 to 1065 1 to 672 exact AAA   672/672
(100 %)
6 diff
(99.2 %id)
DA610446   .b 395 to 930 2 to 537 exact capped   536/536
(100 %)
0 diff
(100 %id)
BP432184   .b 395 to 719 6 to 330       323/330
(97 %)
6 diff
(98.2 %id)
DB130301 thymus .b 395 to 968 2 to 575 exact capped   574/574
(100 %)
0 diff
(100 %id)
CB990975 placenta, pre-eclamptic placenta .b 396 to 1018 24 to 651 I105N I106Y H107P D108*     628/729
(86 %)
10 diff
(98.7 %id)
BG943756 blood .b 397 to 841 1 to 445 M16L     445/445
(100 %)
3 diff
(99.4 %id)
CN396158 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 397 to 858 3 to 464 exact AAA   460/464
(99 %)
6 diff
(98.8 %id)
DB511471 testis .b 397 to 836 15 to 454 G15A   Submitted on the opposite strand 440/454
(96 %)
6 diff
(98.7 %id)
BG707201 brain, hypothalamus .b 397 to 1071 1 to 675 exact     675/675
(100 %)
5 diff
(99.3 %id)
BU598437 mixed (pool of 40 RNAs) .b 397 to 1064 1 to 670 exact     670/680
(98 %)
3 diff
(99.6 %id)
BU565321 mixed (pool of 40 RNAs) .b 397 to 808 1 to 420 A102T F109L L115F G116R I117D ...     420/676
(62 %)
11 diff
(98.4 %id)
BU959713 mixed (pool of 40 RNAs) .b 397 to 853 1 to 459 exact     459/867
(52 %)
7 diff
(99.2 %id)
CB958151 Pooled-Glandular .b 397 to 966 1 to 586 I21T F87X K88*     586/728
(80 %)
37 diff
(95.0 %id)
DB493108 hypothalamus .b 398 to 814 1 to 417 exact     417/417
(100 %)
0 diff
(100 %id)
BG504381 embryonal carcinoma, testis .b 398 to 859 1 to 464 exact     464/465
(99 %)
2 diff
(99.6 %id)
BU943680 mixed (pool of 40 RNAs) .b 398 to 854 1 to 459 exact     459/462
(99 %)
3 diff
(99.4 %id)
BG941270 blood .b 399 to 742 1 to 346       346/346
(100 %)
1 diff
(99.8 %id)
DA062312 cerebellum .b 399 to 963 2 to 566 E32D capped   565/565
(100 %)
1 diff
(99.9 %id)
DA064963 cerebellum .b 399 to 977 2 to 580 exact capped   579/579
(100 %)
0 diff
(100 %id)
BM804419 lymph, lymphoma, cell line .b 399 to 1024 7 to 630 V2G D3P M4D M5G D6L ... AAA   622/630
(98 %)
14 diff
(97.8 %id)
BU564596 mixed (pool of 40 RNAs) .b 399 to 857 1 to 461 exact     461/463
(99 %)
3 diff
(99.4 %id)
BU955126 mixed (pool of 40 RNAs) .b 399 to 854 1 to 458 exact     458/490
(93 %)
3 diff
(99.4 %id)
DA301114 hippocampus .b 400 to 945 2 to 547 exact capped   546/546
(100 %)
1 diff
(99.9 %id)
DA362600 subthalamic nucleus .b 400 to 953 2 to 555 exact capped   554/554
(100 %)
0 diff
(100 %id)
DW410978 Liver .b 400 to 713 18 to 331       314/331
(94 %)
6 diff
(98.2 %id)
DW418332 Liver .b 400 to 814 18 to 431 V103M H120P     414/431
(96 %)
9 diff
(98.0 %id)
DW465657 Liver .b 400 to 738 18 to 356       339/356
(95 %)
8 diff
(97.8 %id)
DB446342 testis .b 400 to 836 1 to 437 C26W K76T T78N Y99* AAA   437/437
(100 %)
6 diff
(98.7 %id)
BJ996175 hepatoblastoma .b 400 to 915 1 to 516 exact     516/516
(100 %)
0 diff
(100 %id)
BU188589 bone marrow, from acute myelogenous leukemia .b 400 to 851 1 to 454 exact     454/460
(98 %)
3 diff
(99.4 %id)
BM784626 myeloma .b 400 to 760 1 to 361       361/361
(100 %)
0 diff
(100 %id)
DA062720 cerebellum .b 401 to 960 2 to 561 exact capped   560/560
(100 %)
0 diff
(100 %id)
DA165584 amygdala .b 401 to 977 2 to 577 N50M G51E T52P I53T E54S ... capped   576/576
(100 %)
3 diff
(99.5 %id)
DA201223 brain .b 401 to 972 2 to 572 exact capped   571/571
(100 %)
2 diff
(99.7 %id)
DA204769 brain .b 401 to 983 2 to 584 M40V capped   583/583
(100 %)
1 diff
(99.9 %id)
DA206005 brain .b 401 to 974 2 to 575 exact capped   574/574
(100 %)
1 diff
(99.9 %id)
DA272073 caudate nucleus .b 401 to 1019 2 to 620 exact capped   619/619
(100 %)
1 diff
(99.9 %id)
DA504727 brain .b 401 to 972 2 to 573 exact capped   572/572
(100 %)
0 diff
(100 %id)
DA505752 brain .b 401 to 979 2 to 580 exact capped   579/579
(100 %)
0 diff
(100 %id)
DA519336 brain .b 401 to 944 2 to 545 exact capped   544/544
(100 %)
0 diff
(100 %id)
BG492358 lung, mucoepidermoid carcinoma .b 401 to 861 1 to 464 K49N N50K G51W T52N I53H ...     464/854
(54 %)
3 diff
(99.7 %id)
BG495674 lung, mucoepidermoid carcinoma .b 401 to 860 1 to 462 E47D H120N AAA   462/462
(100 %)
5 diff
(99.0 %id)
BG527973 lung, mucoepidermoid carcinoma .b 401 to 860 1 to 462 exact AAA   462/462
(100 %)
1 diff
(99.8 %id)
DB036658 testis .b 401 to 978 2 to 579 I66V capped   578/578
(100 %)
1 diff
(99.9 %id)
DB208521 trachea .b 401 to 867 2 to 468 exact capped   467/467
(100 %)
0 diff
(100 %id)
CD173863 embryonic stem cells, WA01, passage 38 .b 402 to 856 20 to 473 exact AAA   452/473
(95 %)
6 diff
(98.8 %id)
BE908226 epithelioid carcinoma, Pancreas .b 405 to 939 1 to 536 R30Q L31A E32G I34D H35S ...     536/536
(100 %)
1 diff
(99.9 %id)
BF571619 melanotic melanoma, high MDR, skin .b 405 to 859 1 to 461 I66M V67W E68K V69W V70L ...     461/700
(65 %)
15 diff
(97.9 %id)
AA461254   .b 406 to 993 1 to 587 exact     587/587
(100 %)
2 diff
(99.7 %id)
AI167442 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 406 to 836 431 to 1 T74K A75P     431/431
(100 %)
3 diff
(99.4 %id)
BE559626 Burkitt lymphoma, lymph .b 406 to 1159 1 to 747 I66M V67W E68K V69W V70L ...     749/752
(99 %)
25 diff
(96.7 %id)
BM551604 astrocytoma grade IV, cell line, brain .b 406 to 858 31 to 483 exact AAA   451/483
(93 %)
8 diff
(98.4 %id)
W93663 heart .b 407 to 621 1 to 216   fully sequenced,   216/216
(100 %)
1 diff
(99.6 %id)
BU169395 eye, retinoblastoma .b 409 to 1264 9 to 869 exact tiling clone,   859/869
(98 %)
14 diff
(98.4 %id)
BG177209 lymph, lymphoma, cell line .b 410 to 858 1 to 449 exact AAA   449/449
(100 %)
3 diff
(99.4 %id)
BQ216100 melanotic melanoma, skin .b 410 to 1060 1 to 652 G38X M40N F41V I42Y L43S ... AAA   652/652
(100 %)
3 diff
(99.6 %id)
DA064637 cerebellum .b 411 to 976 2 to 567 exact capped   566/566
(100 %)
0 diff
(100 %id)
AI333471 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 411 to 856 470 to 25 M5K T37P L43F T78P S83F AAA   446/446
(100 %)
11 diff
(97.6 %id)
DA082873 cerebellum .b 412 to 986 2 to 576 exact capped   575/575
(100 %)
0 diff
(100 %id)
BQ649502 hepatocellular carcinoma, cell line, Liver .b 412 to 857 22 to 467 exact     446/507
(87 %)
7 diff
(98.7 %id)
DA300013 hippocampus .b 414 to 977 2 to 565 exact capped   564/564
(100 %)
0 diff
(100 %id)
CN396156 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 414 to 1023 13 to 622 exact     610/625
(97 %)
7 diff
(98.9 %id)
AW410993.
matches multiple genes
muscle, rhabdomyosarcoma .b 414 to 838 1 to 425 V2R   also hits gene OS9 425/427
(99 %)
6 diff
(98.6 %id)
BG107805 Bone, osteosarcoma, cell line .b 414 to 1064 1 to 651 exact AAA   651/651
(100 %)
0 diff
(100 %id)
BM562796 astrocytoma grade IV, cell line, brain .b 414 to 836 1 to 423 V2G AAA   423/423
(100 %)
1 diff
(99.8 %id)
BM562934 astrocytoma grade IV, cell line, brain .b 414 to 836 1 to 424 G38X M40N F41V I42Y L43S ... AAA   424/424
(100 %)
1 diff
(99.8 %id)
BQ654040 hepatocellular carcinoma, cell line, Liver .b 414 to 856 1 to 443 exact AAA   443/443
(100 %)
0 diff
(100 %id)
DB057261 testis .b 414 to 881 2 to 469 exact capped   468/468
(100 %)
0 diff
(100 %id)
CN396154 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 415 to 838 8 to 431 exact     422/434
(97 %)
7 diff
(98.4 %id)
BG472673 eye, retinoblastoma .b 415 to 1066 1 to 655 exact     655/656
(99 %)
5 diff
(99.3 %id)
BP432364   .b 415 to 782 1 to 370 exact     370/370
(100 %)
3 diff
(99.2 %id)
BT007320   .b 417 to 780 1 to 364       364/366
(99 %)
1 diff
(99.8 %id)
CN396159 embryonic stem cells, DMSO-treated H9 cellline .b 419 to 851 1 to 434   AAA   434/434
(100 %)
1 diff
(99.8 %id)
AA877170 Kidney .b 419 to 1065 649 to 3       647/649
(99 %)
7 diff
(99.0 %id)
BF132906 lung, mucoepidermoid carcinoma .b 419 to 860 1 to 441   AAA   441/441
(100 %)
3 diff
(99.4 %id)
BM083599 eye, retinoblastoma .b 419 to 1122 1 to 703       703/703
(100 %)
1 diff
(99.9 %id)
BQ221863 large cell carcinoma, lung .b 419 to 860 11 to 452   AAA   442/452
(97 %)
6 diff
(98.7 %id)
BP431594   .b 421 to 809 1 to 391       391/391
(100 %)
2 diff
(99.5 %id)
BP432124   .b 421 to 824 1 to 406       406/406
(100 %)
2 diff
(99.6 %id)
F35676 pectoral muscle (after mastectomy) .b 421 to 797 1 to 377       377/377
(100 %)
2 diff
(99.5 %id)
AA742693 pooled germ cell tumors .b 422 to 1066 645 to 1       645/645
(100 %)
12 diff
(98.2 %id)
AI688228 colon .b 422 to 1065 647 to 4       644/647
(99 %)
5 diff
(99.3 %id)
AI688239 colon .b 422 to 1065 647 to 4       644/647
(99 %)
2 diff
(99.7 %id)
BY797391 eye .b 423 to 1040 1 to 618       618/618
(100 %)
1 diff
(99.9 %id)
AA372488 colon .b 432 to 773 1 to 344       344/347
(99 %)
16 diff
(95.4 %id)
DB546497 hippocampus .b 434 to 858 1 to 425     Submitted on the opposite strand 425/425
(100 %)
0 diff
(100 %id)
BQ128122 insulinoma, Pancreas .b 434 to 849 17 to 432       416/432
(96 %)
6 diff
(98.7 %id)
BQ128383 insulinoma, Pancreas .b 434 to 850 432 to 16   AAA   417/432
(96 %)
0 diff
(100 %id)
CK905771 insulinoma, Pancreas .b 434 to 814 381 to 1       381/396
(96 %)
0 diff
(100 %id)
CK905772 insulinoma, Pancreas .b 434 to 850 17 to 433   AAA   417/433
(96 %)
6 diff
(98.7 %id)
BQ631145 Pancreas, Purified pancreatic islet .b 435 to 1065 638 to 9       630/638
(98 %)
2 diff
(99.7 %id)
DN913056   .b 449 to 1063 667 to 53   AAA   615/615
(100 %)
3 diff
(99.6 %id)
DN911884   .b 450 to 855 407 to 2       406/418
(97 %)
1 diff
(99.8 %id)
DN911885   .b 450 to 855 11 to 416       406/417
(97 %)
9 diff
(97.9 %id)
DN912712   .b 450 to 978 11 to 539       527/539
(97 %)
7 diff
(98.8 %id)
DN912928   .b 450 to 1064 11 to 625   AAA   615/625
(98 %)
8 diff
(98.8 %id)
DN913424   .b 450 to 706 11 to 266       256/266
(96 %)
7 diff
(97.4 %id)
DN914345   .b 450 to 831 382 to 1       382/393
(97 %)
3 diff
(99.3 %id)
DN916112   .b 450 to 852 405 to 3       403/416
(96 %)
9 diff
(97.9 %id)
DN916113   .b 450 to 853 12 to 415       404/416
(97 %)
8 diff
(98.1 %id)
DN916533   .b 450 to 838 13 to 402   AAA   388/436
(88 %)
8 diff
(98.2 %id)
DN919808   .b 450 to 887 11 to 448       436/448
(97 %)
11 diff
(97.6 %id)
DN920676   .b 450 to 852 12 to 414   AAA   403/414
(97 %)
6 diff
(98.6 %id)
AA625139 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 451 to 945 1 to 496       496/496
(100 %)
2 diff
(99.6 %id)
BF912603 uterus_tumor .b 455 to 784 1 to 331       331/331
(100 %)
1 diff
(99.7 %id)
AA648932 germinal center B cell .b 455 to 1066 625 to 10       616/646
(95 %)
6 diff
(99.1 %id)
BF908138 uterus_tumor .b 456 to 784 1 to 329       329/329
(100 %)
3 diff
(99.1 %id)
AI198618   .b 460 to 836 401 to 25   AAA   377/377
(100 %)
1 diff
(99.8 %id)
BF196376 fibrotheoma, ovary .b 463 to 777 315 to 1       315/337
(93 %)
16 diff
(95.3 %id)
AW016005   .b 466 to 836 388 to 18   AAA   371/371
(100 %)
2 diff
(99.5 %id)
BF570801 melanotic melanoma, high MDR, skin .b 468 to 1056 1 to 594       594/786
(75 %)
22 diff
(97.3 %id)
CA776314 Pancreas, Purified pancreatic islet .b 468 to 1064 614 to 18   AAA   597/597
(100 %)
1 diff
(99.9 %id)
AI365028 pooled germ cell tumors .b 474 to 836 365 to 1       363/365
(99 %)
1 diff
(99.8 %id)
AA682467 liver and spleen .b 477 to 1066 588 to 1       588/588
(100 %)
9 diff
(98.5 %id)
AI351115 pooled germ cell tumors .b 477 to 818 359 to 18       342/359
(95 %)
0 diff
(100 %id)
AI400330 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 496 to 1066 574 to 2       571/574
(99 %)
7 diff
(98.8 %id)
AI243725 pooled .b 498 to 1066 578 to 8       569/578
(98 %)
7 diff
(98.8 %id)
AI243869 pooled .b 499 to 1066 570 to 8       563/570
(98 %)
11 diff
(98.1 %id)
BG460232   .b 507 to 1045 542 to 1     Submitted on the opposite strand 542/695
(77 %)
12 diff
(98.3 %id)
H49351 liver and spleen .b 507 to 833 331 to 1       331/332
(99 %)
5 diff
(98.5 %id)
AA918597 pooled .b 514 to 852 339 to 2       338/351
(96 %)
13 diff
(96.3 %id)
AA975429 pooled germ cell tumors .b 516 to 836 320 to 1       320/320
(100 %)
1 diff
(99.7 %id)
AI250796 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 516 to 1060 553 to 13   AAA   541/571
(94 %)
9 diff
(98.5 %id)
DN912929   .b 527 to 1064 590 to 54   AAA   537/537
(100 %)
3 diff
(99.5 %id)
AA807487 pooled germ cell tumors .b 527 to 851 327 to 3       325/327
(99 %)
0 diff
(100 %id)
T27775 colon, endothelial .b 528 to 826 1 to 299       299/303
(98 %)
2 diff
(99.4 %id)
F35677 pectoral muscle (after mastectomy) .b 529 to 709 1 to 181       181/181
(100 %)
2 diff
(98.9 %id)
AI078674 parathyroid gland, parathyroid tumor .b 531 to 1028 497 to 4       494/514
(96 %)
8 diff
(98.5 %id)
AA743538 germinal center B cell .b 535 to 1066 543 to 12   AAA   532/532
(100 %)
7 diff
(98.7 %id)
AW949993   .b 536 to 860 1 to 325   AAA   325/325
(100 %)
1 diff
(99.7 %id)
AW949994   .b 536 to 860 1 to 325   AAA   325/325
(100 %)
0 diff
(100 %id)
AA860111   .b 545 to 1028 490 to 8       483/493
(97 %)
8 diff
(98.4 %id)
AI376819 pooled .b 554 to 1066 509 to 4       506/509
(99 %)
12 diff
(97.7 %id)
AW043673 pooled .b 555 to 1028 476 to 3       474/476
(99 %)
0 diff
(100 %id)
W93664 heart .b 560 to 1028 474 to 4   fully sequenced,   471/474
(99 %)
3 diff
(99.4 %id)
AA918714 Kidney .b 563 to 1065 509 to 5       505/509
(99 %)
4 diff
(99.3 %id)
TI_149281577   .b 567 to 1066 531 to 32   AAA   500/809
(61 %)
1 diff
(99.9 %id)
TI_149304659   .b 567 to 1066 589 to 90   AAA   500/969
(51 %)
0 diff
(100 %id)
BM971278 lung, Primary Lung Epithelial Cells .b 567 to 1066 516 to 17   AAA   500/507
(98 %)
0 diff
(100 %id)
BF196375 fibrotheoma, ovary .b 588 to 1066 479 to 1       479/479
(100 %)
0 diff
(100 %id)
BQ379645 uterus_tumor .b 591 to 784 194 to 1       194/203
(95 %)
4 diff
(98.1 %id)
AA701935 liver and spleen .b 591 to 1064 490 to 17   AAA   474/475
(99 %)
3 diff
(99.4 %id)
AA677285 liver and spleen .b 591 to 1063 482 to 1       482/528
(91 %)
16 diff
(97.0 %id)
AI033070 liver and spleen .b 591 to 1066 477 to 2       476/485
(98 %)
3 diff
(99.4 %id)
AW264399 brain, three pooled meningiomas .b 591 to 1052 474 to 13   AAA   462/462
(100 %)
0 diff
(100 %id)
AI160787 placenta .b 593 to 1066 476 to 3       474/489
(96 %)
8 diff
(98.4 %id)
AA227787 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 596 to 1060 465 to 1       465/465
(100 %)
3 diff
(99.4 %id)
AI247552 liver and spleen .b 599 to 1065 466 to 2       465/514
(90 %)
4 diff
(99.3 %id)
AI351848 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .b 599 to 1065 461 to 2       460/461
(99 %)
9 diff
(98.1 %id)
AI735761 colon .b 602 to 1060 459 to 1       459/459
(100 %)
2 diff
(99.6 %id)
AA705038 liver and spleen .b 604 to 1066 463 to 1       463/463
(100 %)
0 diff
(100 %id)
DN919809   .b 610 to 1064 458 to 4       455/458
(99 %)
0 diff
(100 %id)
BU566681 mixed (pool of 40 RNAs) .b 612 to 881 1 to 270   AAA   270/270
(100 %)
2 diff
(99.3 %id)
DN914592   .b 616 to 1065 455 to 6       450/456
(98 %)
4 diff
(99.2 %id)
AI807505 pooled .b 616 to 1065 453 to 4       450/453
(99 %)
0 diff
(100 %id)
CA393902 eye, RPE/choroid .b 627 to 800 1 to 174       174/174
(100 %)
2 diff
(98.9 %id)
N33011 melanocyte .b 628 to 1061 438 to 5       434/439
(98 %)
0 diff
(100 %id)
AW515896 lymph node, lymphoma, follicular mixed small and largecell .b 643 to 1061 420 to 2       419/420
(99 %)
0 diff
(100 %id)
DN920675   .b 659 to 852 195 to 2       194/195
(99 %)
0 diff
(100 %id)
AI765604 2 pooled tumors (clear cell type), Kidney .b 739 to 1058 334 to 15   AAA   320/320
(100 %)
2 diff
(99.4 %id)
AW381917 head_neck .b 746 to 857 125 to 14       112/125
(89 %)
0 diff
(100 %id)
D12305 Liver .b 781 to 858 1 to 79       79/79
(100 %)
1 diff
(98.8 %id)
T95667 liver and spleen .b 784 to 1055 276 to 1       276/336
(82 %)
4 diff
(98.9 %id)
EH331543   .b 829 to 916 1 to 88       88/88
(100 %)
0 diff
(100 %id)
BM280373 bone marrow, thyroid .b 840 to 1021 194 to 13   AAA   182/182
(100 %)
0 diff
(100 %id)
AA015678 eye, retina .b 898 to 1146 1 to 250   tiling clone,   250/252
(99 %)
4 diff
(98.5 %id)
AA017653 eye, retina .b 898 to 1113 1 to 216       216/216
(100 %)
1 diff
(99.6 %id)
AA347018 heart .b 1126 to 1360 1 to 235       235/235
(100 %)
8 diff
(96.6 %id)
AA347088 heart .b 1126 to 1469 1 to 341   tiling clone,   341/341
(100 %)
1 diff
(99.8 %id)
CN268012 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1300 to 1969 1 to 669   tiling clone,   669/669
(100 %)
5 diff
(99.3 %id)
BQ638052 eye, retina .b 1603 to 2247 1 to 645   tiling clone,   645/645
(100 %)
1 diff
(99.9 %id)
BX108260 carcinoid, lung .b 1796 to 2522 1 to 726   tiling clone,   726/726
(100 %)
2 diff
(99.8 %id)
CA413710 Chondrosarcoma Grade II, Left Pelvis .b 1949 to 2596 665 to 19   AAA   647/647
(100 %)
1 diff
(99.9 %id)
BJ996176 hepatoblastoma .b 2035 to 2560 526 to 1       526/526
(100 %)
0 diff
(100 %id)
AA902341 carcinoid, lung .b 2097 to 2596 500 to 2       499/500
(99 %)
0 diff
(100 %id)
DB322660   .b 2110 to 2596 488 to 1       488/488
(100 %)
7 diff
(98.6 %id)
DB547137 hippocampus .b 2151 to 2594 1 to 445     Submitted on the opposite strand 445/447
(99 %)
7 diff
(98.5 %id)
AI356882 brain, glioblastoma (pooled) .b 2157 to 2596 440 to 1       440/440
(100 %)
7 diff
(98.5 %id)
DB564175 hypothalamus .b 2159 to 2596 1 to 438   tiling clone, Submitted on the opposite strand 438/438
(100 %)
0 diff
(100 %id)
DB544572 hippocampus .b 2166 to 2596 1 to 429     Submitted on the opposite strand 429/429
(100 %)
3 diff
(99.4 %id)
DB531730 hippocampus .b 2171 to 2594 1 to 424     Submitted on the opposite strand 424/426
(99 %)
1 diff
(99.8 %id)
DB537445 hippocampus .b 2177 to 2596 1 to 420     Submitted on the opposite strand 420/420
(100 %)
1 diff
(99.8 %id)
AA347017 heart .b 2274 to 2596 324 to 1       324/326
(99 %)
1 diff
(99.7 %id)
AA346959 heart .b 2352 to 2596 245 to 1       245/245
(100 %)
0 diff
(100 %id)
BI494782 cochlea, ear .b 2361 to 2596 8 to 243   fully sequenced, AAA   236/243
(97 %)
6 diff
(97.6 %id)
BI494781 cochlea, ear .b 2401 to 2596 220 to 25   fully sequenced, AAA   196/196
(100 %)
0 diff
(100 %id)
AI699352 pooled .c 1 to 434 437 to 1 A10G P11T E12G L13A H14S ... tiling clone,   437/437
(100 %)
3 diff
(99.4 %id)
AA723789 pooled .c 27 to 432 406 to 1   tiling clone,   406/406
(100 %)
4 diff
(99.1 %id)
BI465017 testis .d -8 to 407 1 to 416 I27X tiling clone, AAA   416/416
(100 %)
5 diff
(98.8 %id)
R92111 liver and spleen .e 1 to 343 1 to 342       342/342
(100 %)
1 diff
(99.8 %id)
H59305 liver and spleen .e 1 to 420 1 to 428   tiling clone,   428/428
(100 %)
11 diff
(97.5 %id)
AV720207 corresponding non cancerous liver tissue .e 236 to 821 591 to 7 exact tiling clone, Submitted on the opposite strand 585/591
(98 %)
17 diff
(97.2 %id)
AA677912 liver and spleen .e 341 to 797 456 to 1 exact tiling clone,   456/456
(100 %)
1 diff
(99.8 %id)
H59259 liver and spleen .e 454 to 784 336 to 1 F2C I3L L4X S5L D6S ...     336/337
(99 %)
6 diff
(98.3 %id)
R92112 liver and spleen .e 603 to 804 203 to 2   tiling clone,   202/203
(99 %)
0 diff
(100 %id)
DA101648 cerebellum .f 1 to 525 2 to 526   capped   525/525
(100 %)
1 diff
(99.9 %id)
DB005976 breast, tumor tissue .f 1 to 538 2 to 539   tiling clone, capped   538/538
(100 %)
0 diff
(100 %id)
DA996573   .f 7 to 555 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB112792 thymus .f 7 to 569 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
CR610107 Placenta Cot 25-normalized .f 438 to 908 1 to 471 exact tiling clone,   471/471
(100 %)
0 diff
(100 %id)
BX335750 Placenta Cot 25-normalized .f 438 to 617 1 to 180   fully sequenced,   180/180
(100 %)
1 diff
(99.5 %id)
BX335749 Placenta Cot 25-normalized .f 587 to 856 270 to 1   fully sequenced,   270/270
(100 %)
1 diff
(99.7 %id)
BC009868 Lung, small cell carcinoma .g 1 to 1592 1 to 1592 exact tiling clone, available from MGC, AAA   1592/1592
(100 %)
2 diff
(99.9 %id)
NM_002947.3   .g 1 to 1592 1 to 1592 exact RefSeq, AAA   1592/1592
(100 %)
2 diff
(99.9 %id)
BE791904 lung, small cell carcinoma .g 19 to 797 1 to 775       775/1136
(68 %)
18 diff
(98.5 %id)
BE795281 lung, small cell carcinoma .g 19 to 703 1 to 683       683/683
(100 %)
6 diff
(99.2 %id)
TI_227714610   .g 717 to 1614 981 to 97 exact AAA   885/976
(90 %)
20 diff
(98.0 %id)
CD365270 Alveolar Macrophage, lung .g 912 to 1614 721 to 19 exact AAA   703/703
(100 %)
0 diff
(100 %id)
AA383092 testis .g 962 to 1320 1 to 359       359/359
(100 %)
2 diff
(99.5 %id)
DA493917 brain .g 1090 to 1609 2 to 523 exact capped   522/522
(100 %)
2 diff
(99.7 %id)
BG779139 adenocarcinoma, Prostate .g 1096 to 1820 1 to 721 F87V tiling clone, AAA   721/721
(100 %)
6 diff
(99.2 %id)
CB150584 cervix, Uterine .g 1101 to 1650 1 to 550 exact     550/550
(100 %)
0 diff
(100 %id)
CD174699 embryonic stem cells, WA01, passage 38 .g 1101 to 1592 19 to 509 S10P R11C Q119* AAA   489/509
(96 %)
7 diff
(98.7 %id)
AV763234 bone marrow .g 1101 to 1510 1 to 400       400/405
(98 %)
8 diff
(98.1 %id)
DA300581 hippocampus .g 1102 to 1677 2 to 577 exact capped   576/576
(100 %)
0 diff
(100 %id)
FN171275 breast carcinoma .g 1102 to 1188 1 to 88       88/88
(100 %)
7 diff
(92.1 %id)
DA781182 brain .g 1102 to 1675 2 to 576 L31P E32G I34D H35S P36S ... capped   575/575
(100 %)
2 diff
(99.7 %id)
DB180143 kidney, tumor tissue .g 1102 to 1660 2 to 560 exact capped   559/559
(100 %)
0 diff
(100 %id)
DB251812 uterus .g 1102 to 1641 2 to 541 exact capped   540/540
(100 %)
1 diff
(99.9 %id)
FN074831 breast carcinoma .g 1112 to 1208 94 to 1     Submitted on the opposite strand 94/98
(95 %)
3 diff
(97.0 %id)
CD174520 embryonic stem cells, WA01, passage 38 .g 1113 to 1592 14 to 493 exact AAA   478/493
(96 %)
6 diff
(98.8 %id)
BM452932 melanotic melanoma, skin .g 1116 to 1455 18 to 357 exact     735/877
(83 %)
34 diff
(96.2 %id)
TI_44170237   .g 1118 to 1614 87 to 583 exact AAA   495/583
(84 %)
6 diff
(99.0 %id)
BI553400 brain, hippocampus .g 1119 to 1614 1 to 498 exact AAA   496/498
(99 %)
4 diff
(99.2 %id)
AK311842 brain .g 1120 to 1538 1 to 419 exact     419/419
(100 %)
0 diff
(100 %id)
DA067705 cerebellum .g 1121 to 1668 2 to 549 exact capped   548/548
(100 %)
1 diff
(99.9 %id)
DA202133 brain .g 1121 to 1700 2 to 582 L31X E32G I34D H35S P36S ... tiling clone, capped   581/581
(100 %)
1 diff
(99.9 %id)
DA884275   .g 1121 to 1686 2 to 568 L31X E32G I34D H35S P36S ... capped   567/567
(100 %)
2 diff
(99.7 %id)
DB475759 hippocampus .g 1122 to 1619 1 to 498 exact     498/498
(100 %)
0 diff
(100 %id)
DA636388 Kidney .g 1123 to 1692 2 to 571 exact capped   570/570
(100 %)
0 diff
(100 %id)
CB111994 Liver .g 1123 to 1612 1 to 490 exact AAA   490/490
(100 %)
0 diff
(100 %id)
AU122917   .g 1123 to 1612 2 to 492 exact capped, AAA   491/491
(100 %)
1 diff
(99.8 %id)
AU098480   .g 1127 to 1380 47 to 300       252/300
(84 %)
6 diff
(98.0 %id)
EC491771 Prostate .g 1127 to 1221 1 to 94       94/94
(100 %)
1 diff
(99.0 %id)
DA058682 cerebellum .g 1132 to 1388 2 to 259   capped   258/258
(100 %)
1 diff
(99.7 %id)
EC507445 Prostate .g 1135 to 1221 8 to 94       87/94
(92 %)
6 diff
(93.7 %id)
DW450210 Liver .g 1142 to 1334 6 to 199       192/199
(96 %)
7 diff
(96.5 %id)
AA345343 gall bladder .g 1171 to 1418 1 to 248       248/248
(100 %)
0 diff
(100 %id)
F29051 pectoral muscle (after mastectomy) .g 1181 to 1379 1 to 199       199/199
(100 %)
0 diff
(100 %id)
AA374937 lung .g 1186 to 1456 1 to 274       274/300
(91 %)
5 diff
(98.4 %id)
BF094621 uterus_tumor .g 1199 to 1449 253 to 3       251/255
(98 %)
2 diff
(99.3 %id)
FN074544 breast carcinoma .g 1202 to 1271 1 to 68       68/68
(100 %)
5 diff
(92.7 %id)
DN913423   .g 1209 to 1455 256 to 8       249/267
(93 %)
1 diff
(99.7 %id)
BF092528 testis_normal .g 1211 to 1453 244 to 3       242/244
(99 %)
3 diff
(98.8 %id)
BF094671 uterus_tumor .g 1211 to 1453 269 to 28       242/269
(89 %)
0 diff
(100 %id)
BQ379147 uterus_tumor .g 1211 to 1453 269 to 28       242/269
(89 %)
0 diff
(100 %id)
BE934221 head_neck .g 1231 to 1346 14 to 129       114/130
(87 %)
9 diff
(93.1 %id)
BF092387 testis_normal .g 1251 to 1453 9 to 210       202/223
(90 %)
10 diff
(95.6 %id)
DV460746 cochlea, ear .g 1265 to 1415 151 to 1     Submitted on the opposite strand 151/151
(100 %)
1 diff
(99.4 %id)
AW580421 head_neck .g 1289 to 1418 12 to 141       130/141
(92 %)
4 diff
(97.2 %id)
FN137901 breast carcinoma .g 1314 to 1424 110 to 1     Submitted on the opposite strand 110/110
(100 %)
1 diff
(99.1 %id)
EC529065 Prostate .g 1317 to 1421 1 to 104       104/104
(100 %)
1 diff
(99.1 %id)
TI_57177206   .h 1 to 836 24 to 850 exact     824/887
(92 %)
22 diff
(97.6 %id)
BI830978 brain, medulla .h 4 to 836 1 to 824 exact tiling clone,   824/861
(95 %)
19 diff
(97.8 %id)
BI910443 leukocyte .h 130 to 827 1 to 698 exact tiling clone,   698/713
(97 %)
2 diff
(99.8 %id)
TI_57235739   .h 130 to 827 30 to 727 exact     698/742
(94 %)
8 diff
(99.0 %id)
EL951916 eyeball .h 834 to 1485 1 to 652   tiling clone,   652/652
(100 %)
10 diff
(98.5 %id)
BG055356 carcinoid, lung .h 976 to 1499 1 to 525     Submitted on the opposite strand 525/525
(100 %)
19 diff
(96.4 %id)
TI_149283641   .h 1000 to 1679 774 to 95   AAA   680/1088
(62 %)
3 diff
(99.8 %id)
BU680260 lung, Primary Lung Epithelial Cells .h 1000 to 1679 698 to 19   tiling clone, AAA   680/682
(99 %)
3 diff
(99.6 %id)
AA284309 germinal center B cell .h 1207 to 1640 8 to 440   tiling clone,   433/440
(98 %)
7 diff
(98.5 %id)
TI_44348273   .i 1 to 800 118 to 910 E2A Q3E L4V     793/972
(81 %)
16 diff
(98.4 %id)
BI559477 testis .i 3 to 800 1 to 791   tiling clone,   791/853
(92 %)
15 diff
(98.3 %id)
BF855322 prostate_normal .j-u 1 to 466 1 to 467 exact tiling clone,   467/467
(100 %)
4 diff
(99.2 %id)
AV650646 corresponding non cancerous liver tissue Gene RPA3, variant not shown         Submitted on the opposite strand    
BI767484 pooled lung and spleen Gene RPA3, variant not shown         Suspected internal deletion, this clone was ignored    
TI_57181194   Gene RPA3, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI