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Gene ROPN1LTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
165 supporting clones for gene ROPN1L back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA747014   .a 1 to 560 2 to 561   tiling clone, to resequence, capped   560/560
(100 %)
2 diff
(99.7 %id)
DB325004   .a 1335 to 1799 465 to 1   tiling clone, to resequence,   465/467
(99 %)
8 diff
(98.3 %id)
BX449217 adult brain, brain .b -9 to 1061 1 to 1055 L2V S3V E4G W5V Q6A ... tiling clone, to resequence,   1055/1083
(97 %)
30 diff
(97.3 %id)
TI_44351153   .b 129 to 979 131 to 981   tiling clone,   851/981
(86 %)
69 diff
(93.0 %id)
BX428149 adult brain, brain .b 1354 to 2401 1036 to 1   tiling clone, to resequence,   1036/1039
(99 %)
19 diff
(98.2 %id)
NM_031916.3   .c 1 to 1042 1 to 1042 exact RefSeq, AAA   1042/1042
(100 %)
0 diff
(100 %id)
BC014607 Brain, hippocampus .c 5 to 1042 1 to 1038 S3L P229R tiling clone, available from MGC, AAA   1038/1038
(100 %)
4 diff
(99.7 %id)
BI464988 testis .c 64 to 927 1 to 869       867/1106
(78 %)
35 diff
(96.9 %id)
AK098642 testis .c 77 to 1042 1 to 966   available from FLJ,   966/966
(100 %)
2 diff
(99.8 %id)
BM553311 brain, medulla .c 87 to 1043 1 to 954       954/1061
(89 %)
32 diff
(97.0 %id)
BI826837 brain, medulla .c 95 to 913 1 to 819       819/819
(100 %)
7 diff
(99.2 %id)
TI_57173137   .c 95 to 913 30 to 848       819/848
(96 %)
13 diff
(98.5 %id)
TI_44172160   .c 102 to 976 80 to 944       865/1011
(85 %)
30 diff
(97.1 %id)
BX335429 Placenta Cot 25-normalized .c 115 to 1043 1 to 928   fully sequenced,   928/928
(100 %)
4 diff
(99.6 %id)
CR621673 Placenta Cot 25-normalized .c 116 to 1043 1 to 928   tiling clone,   928/928
(100 %)
0 diff
(100 %id)
TI_44351135   .c 118 to 1026 125 to 1041       917/1046
(87 %)
43 diff
(95.9 %id)
BM563822 brain, medulla .c 130 to 1034 5 to 912       908/1093
(83 %)
31 diff
(97.2 %id)
TI_149299511   .c 130 to 1042 988 to 83   AAA   906/969
(93 %)
16 diff
(98.4 %id)
TI_149298037   .c 146 to 1042 962 to 84   AAA   879/947
(92 %)
30 diff
(96.9 %id)
TI_57174707   .c 150 to 913 23 to 789       767/789
(97 %)
12 diff
(98.5 %id)
TI_57174711   .c 150 to 953 28 to 835       808/835
(96 %)
10 diff
(98.9 %id)
TI_57174717   .c 150 to 912 25 to 789       765/789
(96 %)
10 diff
(98.8 %id)
TI_57174760   .c 150 to 978 28 to 862       835/862
(96 %)
10 diff
(98.9 %id)
TI_57174771   .c 150 to 888 25 to 764       738/764
(96 %)
7 diff
(99.1 %id)
BI827363 brain, medulla .c 154 to 913 1 to 762       762/762
(100 %)
6 diff
(99.3 %id)
BI827334 brain, medulla .c 154 to 978 1 to 830       830/830
(100 %)
5 diff
(99.4 %id)
BI827365 brain, medulla .c 154 to 953 1 to 803       803/803
(100 %)
7 diff
(99.2 %id)
BI827369 brain, medulla .c 154 to 912 1 to 760       760/760
(100 %)
6 diff
(99.3 %id)
BI827342 brain, medulla .c 154 to 888 1 to 735       733/735
(99 %)
2 diff
(99.8 %id)
BI832117 brain, medulla .c 213 to 948 64 to 804       741/804
(92 %)
9 diff
(98.9 %id)
TI_57174736   .c 213 to 948 64 to 804       741/804
(92 %)
9 diff
(98.9 %id)
AF239723 testis .c 232 to 1042 1 to 811   AAA   811/811
(100 %)
0 diff
(100 %id)
TI_149293045   .c 232 to 1042 882 to 77   AAA   806/812
(99 %)
17 diff
(98.0 %id)
TI_149301222   .c 232 to 1042 878 to 73   AAA   806/942
(85 %)
11 diff
(98.9 %id)
TI_149296104   .c 236 to 1042 894 to 97   AAA   798/927
(86 %)
11 diff
(98.9 %id)
TI_1948100745   .c 271 to 586 126 to 441   fully sequenced,   316/344
(91 %)
11 diff
(96.9 %id)
TI_1948100418   .c 272 to 557 129 to 414   fully sequenced,   286/313
(91 %)
6 diff
(98.1 %id)
TI_1948100575   .c 272 to 587 128 to 443       316/344
(91 %)
6 diff
(98.3 %id)
BU687873 lung .c 320 to 1042 739 to 17   AAA   723/733
(98 %)
0 diff
(100 %id)
TI_149281778   .c 323 to 1042 801 to 85   AAA   717/718
(99 %)
6 diff
(99.2 %id)
BU607488 Human Lung Epithelial cells, lung .c 323 to 1042 734 to 17   AAA   718/718
(100 %)
4 diff
(99.5 %id)
TI_149288585   .c 329 to 1042 789 to 79   AAA   711/713
(99 %)
6 diff
(99.2 %id)
BM977144 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 336 to 1042 723 to 17   AAA   707/707
(100 %)
1 diff
(99.9 %id)
BM975831 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 340 to 1042 719 to 17   AAA   703/703
(100 %)
0 diff
(100 %id)
TI_149286533   .c 345 to 1042 781 to 85   AAA   697/700
(99 %)
2 diff
(99.8 %id)
BU684136 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 361 to 1042 698 to 17   AAA   682/682
(100 %)
1 diff
(99.9 %id)
BM983009 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 361 to 1042 696 to 17   AAA   680/680
(100 %)
4 diff
(99.5 %id)
BM972093 lung .c 373 to 1042 686 to 17   AAA   670/670
(100 %)
0 diff
(100 %id)
BM970421 lung .c 388 to 1042 670 to 17   AAA   654/654
(100 %)
1 diff
(99.9 %id)
BI826214 brain, medulla .c 389 to 1042 1 to 654   AAA   654/654
(100 %)
0 diff
(100 %id)
TI_57173693   .c 389 to 1042 74 to 727   AAA   654/727
(89 %)
0 diff
(100 %id)
TI_1948100419   .c 496 to 963 599 to 132   fully sequenced,   468/599
(78 %)
1 diff
(99.9 %id)
AI336237 lung .c 534 to 1043 510 to 1       510/510
(100 %)
0 diff
(100 %id)
AI309634 2 pooled tumors (clear cell type), Kidney .c 535 to 1042 518 to 11   AAA   508/508
(100 %)
2 diff
(99.7 %id)
DB550535 hippocampus .c 541 to 1042 1 to 502     Submitted on the opposite strand 502/502
(100 %)
0 diff
(100 %id)
AI671514 pooled germ cell tumors .c 541 to 1042 502 to 1       502/502
(100 %)
0 diff
(100 %id)
BP391184 pancreatic islet .c 543 to 1042 1 to 500     Submitted on the opposite strand 500/500
(100 %)
0 diff
(100 %id)
AI991070 colon, colonic mucosa from 3 patients with Crohn'sdisease .c 555 to 1042 488 to 1       488/488
(100 %)
2 diff
(99.6 %id)
BE673052 pooled germ cell tumors .c 555 to 1043 489 to 1       489/489
(100 %)
0 diff
(100 %id)
TI_1948100746   .c 556 to 963 532 to 125   fully sequenced,   408/532
(76 %)
1 diff
(99.9 %id)
BE349184 malignant melanoma, metastatic to lymphnode, skin .c 562 to 1045 484 to 2       483/484
(99 %)
1 diff
(99.8 %id)
BI827468 brain, medulla .c 580 to 953 543 to 920       378/920
(41 %)
7 diff
(99.3 %id)
TI_57174653   .c 580 to 953 572 to 949       378/949
(39 %)
7 diff
(99.3 %id)
DB548515 hippocampus .c 590 to 1042 1 to 453     Submitted on the opposite strand 453/453
(100 %)
2 diff
(99.6 %id)
AW593139 pooled .c 590 to 994 405 to 1       405/405
(100 %)
0 diff
(100 %id)
BF057164 pooled germ cell tumors .c 608 to 1043 439 to 4       436/439
(99 %)
0 diff
(100 %id)
DB537053 hippocampus .c 610 to 1042 1 to 433     Submitted on the opposite strand 433/433
(100 %)
0 diff
(100 %id)
AA926955 pooled germ cell tumors .c 610 to 1042 433 to 1       433/433
(100 %)
3 diff
(99.4 %id)
TI_1948100576   .c 610 to 963 483 to 130       354/381
(92 %)
1 diff
(99.8 %id)
DB515280 testis .c 613 to 1042 1 to 431     Submitted on the opposite strand 431/431
(100 %)
1 diff
(99.8 %id)
DB530667 hippocampus .c 614 to 1042 1 to 429     Submitted on the opposite strand 429/429
(100 %)
1 diff
(99.8 %id)
DB512779 testis .c 616 to 1042 1 to 427     Submitted on the opposite strand 427/427
(100 %)
3 diff
(99.3 %id)
AI209183   .c 623 to 1043 423 to 3       421/423
(99 %)
0 diff
(100 %id)
AI376768 pooled .c 623 to 1043 422 to 3       420/422
(99 %)
1 diff
(99.8 %id)
AI983134 pooled germ cell tumors .c 623 to 1042 430 to 11   AAA   420/420
(100 %)
2 diff
(99.6 %id)
AW168257 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 623 to 1043 422 to 2       421/422
(99 %)
0 diff
(100 %id)
AW168258 serous papillary carcinoma, high grade, 2pooled tumors, uterus .c 623 to 1043 422 to 2       421/422
(99 %)
0 diff
(100 %id)
AI003842   .c 629 to 1043 414 to 3       412/414
(99 %)
3 diff
(99.3 %id)
DB514799 testis .c 631 to 1042 1 to 412     Submitted on the opposite strand 412/413
(99 %)
2 diff
(99.6 %id)
AW014184   .c 631 to 1042 429 to 18   AAA   412/412
(100 %)
2 diff
(99.6 %id)
AW170659 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 633 to 1042 408 to 1       408/408
(100 %)
2 diff
(99.6 %id)
DB509506 testis .c 636 to 1042 1 to 407   AAA Submitted on the opposite strand 407/407
(100 %)
0 diff
(100 %id)
AI962547 pooled germ cell tumors .c 655 to 1043 395 to 7       389/395
(98 %)
0 diff
(100 %id)
TI_149276183   .c 655 to 1042 466 to 79   AAA   388/995
(38 %)
3 diff
(99.7 %id)
BM968933 lung, Primary Lung Epithelial Cells .c 655 to 1042 404 to 17   AAA   388/396
(97 %)
3 diff
(99.3 %id)
BX335428 Placenta Cot 25-normalized .c 658 to 1001 350 to 8   fully sequenced,   343/350
(98 %)
3 diff
(99.2 %id)
BF223013 pooled germ cell tumors .c 679 to 1043 366 to 2       365/366
(99 %)
0 diff
(100 %id)
DB510099 testis .c 688 to 1042 28 to 383     Submitted on the opposite strand 356/383
(92 %)
10 diff
(97.4 %id)
AI632455 pooled germ cell tumors .c 691 to 1042 352 to 1       352/352
(100 %)
0 diff
(100 %id)
AI989818 pooled germ cell tumors .c 691 to 1042 352 to 1       352/352
(100 %)
0 diff
(100 %id)
AI968785 pooled germ cell tumors .c 693 to 1042 350 to 1       350/350
(100 %)
0 diff
(100 %id)
AA897650 pooled .c 727 to 1042 336 to 22   AAA   315/315
(100 %)
1 diff
(99.7 %id)
AI627427 pooled germ cell tumors .c 744 to 1042 299 to 1       299/299
(100 %)
0 diff
(100 %id)
CB851824 Human Lung Epithelial cells, lung .c 747 to 1042 43 to 338   AAA Submitted on the opposite strand 296/338
(87 %)
6 diff
(98.3 %id)
AI000372 pooled germ cell tumors .c 748 to 1043 302 to 7       296/302
(98 %)
0 diff
(100 %id)
AI699949 pooled germ cell tumors .c 839 to 1043 208 to 4       205/208
(98 %)
0 diff
(100 %id)
BM563234 brain, medulla .d 1 to 896 1 to 909   tiling clone,   909/1109
(81 %)
24 diff
(97.9 %id)
DB479784 hippocampus .d 339 to 833 1 to 495   tiling clone,   495/495
(100 %)
1 diff
(99.8 %id)
TI_149299362   .d 775 to 1587 888 to 87   tiling clone, AAA Possibly primed on the genome, locally A rich (23/25 A in genome downstream of last aligned base) 804/802
(100 %)
43 diff
(94.7 %id)
BF960306 nervous_normal .d 825 to 1095 271 to 1   tiling clone,   271/271
(100 %)
1 diff
(99.7 %id)
BM975707 lung, Primary Lung Cystic Fibrosis EpithelialCells .d 1103 to 1587 499 to 14   tiling clone, AAA Possibly primed on the genome, locally A rich (23/25 A in genome downstream of last aligned base) 486/486
(100 %)
3 diff
(99.4 %id)
AK026656 Human lung .e-u 1 to 1855 1 to 1855 exact tiling clone, available from FLJ, AAA   1855/1855
(100 %)
2 diff
(99.9 %id)
TI_43963102   .f 1 to 611 46 to 655   fully sequenced, AAA   610/655
(93 %)
6 diff
(99.1 %id)
DB481715 hippocampus .f 5 to 433 1 to 429   tiling clone,   429/429
(100 %)
1 diff
(99.8 %id)
DB215541 trachea .f 5 to 459 2 to 456   capped   455/455
(100 %)
3 diff
(99.4 %id)
DB444599 testis .f 7 to 443 1 to 437       437/437
(100 %)
4 diff
(99.1 %id)
BI520249 brain, medulla .f 11 to 869 1 to 863 L185F E186G T187D E188G S189I ... fully sequenced,   863/863
(100 %)
10 diff
(98.9 %id)
BX113042   .f 16 to 687 1 to 672   tiling clone,   672/672
(100 %)
0 diff
(100 %id)
AA454033   .f 23 to 609 1 to 581       585/581
(100 %)
10 diff
(98.3 %id)
DB231436 trachea .f 25 to 597 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
BU570482 testis .f 27 to 802 1 to 781       781/789
(98 %)
12 diff
(98.5 %id)
TI_43963560   .f 28 to 868 29 to 872 E109D L194S E196G N197K I198Y ... fully sequenced,   844/872
(96 %)
19 diff
(97.9 %id)
H92434 eye, retina .f 34 to 418 1 to 387       391/410
(95 %)
16 diff
(96.1 %id)
BI520189 brain, medulla .f 35 to 868 1 to 837 E109D L194S E196G N197K I198Y ... fully sequenced,   837/837
(100 %)
14 diff
(98.4 %id)
DB447696 testis .f 41 to 454 1 to 415       415/415
(100 %)
5 diff
(98.8 %id)
BI463996 testis .f 73 to 785 6 to 720       715/847
(84 %)
26 diff
(97.0 %id)
DB449921 testis .f 84 to 542 1 to 459       459/459
(100 %)
6 diff
(98.7 %id)
TI_149309576   .f 97 to 934 917 to 87 C9A A10L Q11S Q12R I13S ... AAA   831/943
(88 %)
7 diff
(99.3 %id)
TI_149286055   .f 294 to 934 716 to 78   AAA   639/801
(79 %)
5 diff
(99.4 %id)
BU679727 lung .f 303 to 934 647 to 17   AAA   631/631
(100 %)
2 diff
(99.7 %id)
BU680903 lung .f 303 to 934 647 to 17   AAA   631/631
(100 %)
1 diff
(99.9 %id)
AL037260 brain .f 308 to 934 646 to 20   AAA   627/627
(100 %)
0 diff
(100 %id)
AA442354   .f 344 to 787 1 to 443   fully sequenced,   443/443
(100 %)
5 diff
(98.9 %id)
BM692876 eye, Retina Foveal and Macular .f 364 to 928 1 to 565       565/565
(100 %)
0 diff
(100 %id)
AI670936 pooled germ cell tumors .f 384 to 930 553 to 7       547/553
(98 %)
0 diff
(100 %id)
H92646 eye, retina .f 536 to 913 378 to 1       378/378
(100 %)
3 diff
(99.3 %id)
BI520827 brain, medulla .f 550 to 862 329 to 9   fully sequenced,   321/329
(97 %)
9 diff
(97.3 %id)
BI520963 brain, medulla .f 550 to 886 337 to 1   fully sequenced,   337/337
(100 %)
5 diff
(98.6 %id)
TI_43963103   .f 550 to 886 337 to 1   fully sequenced,   337/337
(100 %)
5 diff
(98.6 %id)
TI_43963561   .f 550 to 862 329 to 9   fully sequenced,   321/329
(97 %)
9 diff
(97.3 %id)
AA453616   .f 640 to 935 298 to 3   tiling clone,   296/298
(99 %)
0 diff
(100 %id)
AA437276   .f 726 to 935 212 to 3   fully sequenced,   210/212
(99 %)
0 diff
(100 %id)
BI560111 testis .g 1 to 830 1 to 842 A2G A40C Q41S Q42T I43D ... tiling clone,   842/871
(96 %)
57 diff
(93.5 %id)
TI_44348932   .g 6 to 830 127 to 963       837/992
(84 %)
56 diff
(94.4 %id)
DB512825 testis .h 1 to 421 1 to 426 E4G P6A G15V L16P T17E ... tiling clone, Submitted on the opposite strand 426/426
(100 %)
13 diff
(97.0 %id)
DW409962 Liver .i-u 1 to 320 17 to 336 exact tiling clone,   320/336
(95 %)
6 diff
(98.3 %id)
BG943624 blood .i-u 174 to 626 483 to 30   tiling clone, AAA Possibly primed on the genome, locally A rich (23/25 A in genome downstream of last aligned base) 454/454
(100 %)
2 diff
(99.6 %id)
CD701036 normal nasopharynx Gene ROPN1L, variant not shown              
DB469480 hippocampus Gene ROPN1L, variant not shown              
BQ339906 nervous_normal Gene ROPN1L, variant not shown              
CV024170 mixed Gene ROPN1L, variant not shown              
DB464436 hippocampus Gene ROPN1L, variant not shown              
CN365837 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 Gene ROPN1L, variant not shown              
BP370580 testis Gene ROPN1L, variant not shown              
BP370694 testis Gene ROPN1L, variant not shown              
BP371033 testis Gene ROPN1L, variant not shown              
AW952587   Gene ROPN1L, variant not shown              
DR004217 lung Gene ROPN1L, variant not shown              
AA335927 epididymis Gene ROPN1L, variant not shown              
AI016914   Gene ROPN1L, variant not shown              
BG704904 brain, hippocampus Gene ROPN1L, variant not shown              
BG722157 testis Gene ROPN1L, variant not shown              
BI194124 epithelioid carcinoma cell line, Pancreas Gene ROPN1L, variant not shown              
BI828754 brain, medulla Gene ROPN1L, variant not shown              
BI826984 brain, medulla Gene ROPN1L, variant not shown              
BI832145 brain, medulla Gene ROPN1L, variant not shown              
BI827424 brain, medulla Gene ROPN1L, variant not shown              
BI827355 brain, medulla Gene ROPN1L, variant not shown              
BI832091 brain, medulla Gene ROPN1L, variant not shown              
BI832121 brain, medulla Gene ROPN1L, variant not shown              
BI463703 testis Gene ROPN1L, variant not shown              
BI559801 testis Gene ROPN1L, variant not shown              
CD358027 testis Gene ROPN1L, variant not shown              
TI_57170294   Gene ROPN1L, variant not shown              
TI_57172479   Gene ROPN1L, variant not shown              
TI_57173285   Gene ROPN1L, variant not shown              
TI_57174607   Gene ROPN1L, variant not shown              
TI_57174608   Gene ROPN1L, variant not shown              
TI_57174688   Gene ROPN1L, variant not shown              
TI_57174751   Gene ROPN1L, variant not shown              
TI_57174774   Gene ROPN1L, variant not shown              
TI_57174793   Gene ROPN1L, variant not shown              
TI_44172250   Gene ROPN1L, variant not shown              
TI_44348061   Gene ROPN1L, variant not shown              
TI_44349117   Gene ROPN1L, variant not shown              
TI_44350891   Gene ROPN1L, variant not shown              
TI_1948100913   Gene ROPN1L, variant not shown              
TI_1948100914   Gene ROPN1L, variant not shown              
DB099843 testis Gene ROPN1L, variant not shown       capped      
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f, .g, .h, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI