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Gene ROM1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
131 supporting clones for gene ROM1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AK313674 substantia nigra .a 1 to 1596 2 to 1597 G118A tiling clone,   1597/1597
(100 %)
5 diff
(99.7 %id)
NM_000327.3   .a 1 to 1875 2 to 1876 G118A RefSeq, AAA   1876/1876
(100 %)
2 diff
(99.9 %id)
DA352856 substantia nigra .a 1 to 573 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
DQ426890 retina .a 124 to 384 1 to 261   tiling clone,   261/261
(100 %)
0 diff
(100 %id)
AW380353 head_neck .a 340 to 690 613 to 263       351/625
(56 %)
0 diff
(100 %id)
AW605990 head_neck .a 349 to 672 324 to 1       324/332
(97 %)
2 diff
(99.4 %id)
BE062960 breast .a 349 to 690 358 to 13     Submitted on the opposite strand 346/366
(94 %)
0 diff
(100 %id)
BE150229 head_neck .a 353 to 690 22 to 358       337/372
(90 %)
9 diff
(97.6 %id)
BE150225 head_neck .a 355 to 690 1 to 334       334/348
(95 %)
6 diff
(98.3 %id)
BE150240 head_neck .a 361 to 690 13 to 339       327/353
(92 %)
8 diff
(97.8 %id)
DT218361 brain .a 365 to 859 1 to 495       495/495
(100 %)
1 diff
(99.8 %id)
BE150239 head_neck .a 368 to 690 1 to 321       321/335
(95 %)
6 diff
(98.3 %id)
BE150230 head_neck .a 369 to 690 1 to 322       322/336
(95 %)
7 diff
(98.0 %id)
BE150231 head_neck .a 376 to 690 1 to 315       315/329
(95 %)
5 diff
(98.5 %id)
BE150237 head_neck .a 384 to 690 10 to 317       308/331
(93 %)
4 diff
(98.8 %id)
DA358676 subthalamic nucleus .a 394 to 961 2 to 569   capped   568/568
(100 %)
3 diff
(99.5 %id)
CB155058 brain .a 395 to 863 1 to 469       469/469
(100 %)
1 diff
(99.8 %id)
BP219899 caudate nucleus .a 395 to 977 1 to 583   tiling clone,   583/583
(100 %)
13 diff
(97.8 %id)
DA251866 caudate nucleus .a 396 to 974 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
DA541454 lung .a 396 to 965 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
EL949969 eyeball .a 401 to 916 50 to 562       513/562
(91 %)
6 diff
(99.0 %id)
BF341181 brain, glioblastoma with EGFR amplification .a 406 to 1114 15 to 722       708/723
(97 %)
26 diff
(96.5 %id)
BF347953 anaplastic oligodendroglioma with 1p/19qloss, brain .a 408 to 898 1 to 502       502/505
(99 %)
18 diff
(96.5 %id)
BM049630 carcinoma, cell line, Prostate .a 409 to 1144 1 to 733       733/733
(100 %)
14 diff
(98.1 %id)
BM044251 carcinoma, cell line, Prostate .a 409 to 1128 1 to 727       727/863
(84 %)
17 diff
(98.1 %id)
BC008100 Brain, anaplastic oligodendroglioma with1p/19q loss .a 410 to 1871 1 to 1462 G118A available from MGC, AAA   1462/1462
(100 %)
4 diff
(99.8 %id)
BF527367 anaplastic oligodendroglioma with 1p/19qloss, brain .a 410 to 1040 1 to 631       631/635
(99 %)
7 diff
(98.9 %id)
BC036268 Brain, anaplastic oligodendroglioma with1p/19q loss .a 410 to 1846 1 to 1437 G118A available from MGC,   1437/1437
(100 %)
4 diff
(99.8 %id)
BF973715 leiomyosarcoma cell line, uterus .a 410 to 1028 1 to 623       623/899
(69 %)
30 diff
(96.7 %id)
BQ927097 carcinoma, cell line, Prostate .a 411 to 1280 1 to 881       881/891
(98 %)
34 diff
(96.2 %id)
BQ945514 carcinoma, cell line, Prostate .a 411 to 1126 1 to 721       721/977
(73 %)
17 diff
(98.3 %id)
DA129899 alzheimer cortex .a 414 to 951 2 to 539   capped   538/538
(100 %)
3 diff
(99.5 %id)
BI757792 brain .a 459 to 1324 1 to 856       856/1110
(77 %)
19 diff
(98.3 %id)
TI_57220737   .a 459 to 1324 34 to 889       856/1143
(74 %)
22 diff
(98.1 %id)
BQ637001 eye, retina .a 482 to 1001 1 to 520       520/520
(100 %)
2 diff
(99.7 %id)
CF454877 peripheral nervous system .a 491 to 1222 34 to 762       729/762
(95 %)
9 diff
(98.9 %id)
BI521632 pooled pancreas and spleen .a 504 to 1161 1 to 653   fully sequenced,   653/653
(100 %)
10 diff
(98.5 %id)
AL711908 human skeletal muscle .a 525 to 1031 1 to 507       507/507
(100 %)
2 diff
(99.7 %id)
BX111418 eye, retina .a 530 to 1128 30 to 629       600/629
(95 %)
5 diff
(99.3 %id)
BQ638315 eye, retina .a 531 to 1082 1 to 552       552/552
(100 %)
1 diff
(99.9 %id)
BQ640606 eye, retina .a 533 to 1127 1 to 595       595/595
(100 %)
1 diff
(99.9 %id)
TI_1948076166   .a 534 to 972 130 to 568   fully sequenced,   439/568
(77 %)
6 diff
(99.0 %id)
TI_1948076347   .a 534 to 924 132 to 522   fully sequenced,   391/522
(74 %)
6 diff
(98.9 %id)
TI_1948076526   .a 534 to 946 131 to 543   fully sequenced,   413/543
(76 %)
6 diff
(98.9 %id)
TI_1948076705   .a 534 to 924 131 to 521   fully sequenced,   391/521
(75 %)
6 diff
(98.9 %id)
BQ636074 eye, retina .a 536 to 1130 1 to 595       595/601
(99 %)
2 diff
(99.7 %id)
BQ636457 eye, retina .a 536 to 884 1 to 349       349/349
(100 %)
2 diff
(99.5 %id)
BQ639824 eye, retina .a 536 to 1118 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BQ640684 eye, retina .a 536 to 1060 1 to 525       525/525
(100 %)
2 diff
(99.7 %id)
L07894 retina .a 536 to 1871 1 to 1336 G118A tiling clone,   1336/1336
(100 %)
1 diff
(100.0 %id)
BQ636598 eye, retina .a 537 to 1079 11 to 553       543/553
(98 %)
6 diff
(99.0 %id)
CV025187 mixed .a 541 to 1113 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
R84925 eye, retina .a 541 to 754 1 to 214       214/214
(100 %)
5 diff
(97.7 %id)
BQ636229 eye, retina .a 543 to 979 1 to 437       437/437
(100 %)
2 diff
(99.6 %id)
BQ639709 eye, retina .a 543 to 1000 9 to 466       458/466
(98 %)
3 diff
(99.4 %id)
BQ640641 eye, retina .a 659 to 1146 1 to 488       488/488
(100 %)
1 diff
(99.8 %id)
BQ640172 eye, retina .a 674 to 1277 1 to 604       604/604
(100 %)
1 diff
(99.9 %id)
BQ639928 eye, retina .a 693 to 1321 1 to 629       629/629
(100 %)
1 diff
(99.9 %id)
BQ636274 eye, retina .a 729 to 878 1 to 150       150/150
(100 %)
0 diff
(100 %id)
BQ228016 leiomyosarcoma, uterus .a 802 to 1376 1 to 577       577/1126
(51 %)
11 diff
(99.1 %id)
BQ638320 eye, retina .a 805 to 1399 1 to 595       595/595
(100 %)
1 diff
(99.9 %id)
BQ636002 eye, retina .a 874 to 1056 150 to 332       304/332
(91 %)
11 diff
(96.7 %id)
TI_1948076348   .a 894 to 1602 832 to 119   fully sequenced,   714/832
(85 %)
8 diff
(99.1 %id)
TI_1948076706   .a 894 to 1602 829 to 118   fully sequenced,   712/829
(85 %)
8 diff
(99.1 %id)
TI_1948076527   .a 916 to 1602 824 to 120   fully sequenced,   705/824
(85 %)
8 diff
(99.1 %id)
TI_1948076167   .a 942 to 1602 780 to 118   fully sequenced,   663/780
(85 %)
9 diff
(98.9 %id)
W28204 eye, retina .a 943 to 1453 540 to 26       515/591
(87 %)
15 diff
(97.5 %id)
BM686580 eye, optic nerve .a 974 to 1455 10 to 490   fully sequenced,   481/490
(98 %)
6 diff
(98.8 %id)
EL952162 eyeball .a 978 to 1528 1 to 551       551/551
(100 %)
4 diff
(99.3 %id)
R05411 liver and spleen .a 1018 to 1332 1 to 322       322/369
(87 %)
22 diff
(94.1 %id)
R09813 liver and spleen .a 1019 to 1256 1 to 238       238/238
(100 %)
4 diff
(98.4 %id)
BX091903 liver and spleen .a 1020 to 1760 1 to 741       741/741
(100 %)
2 diff
(99.8 %id)
EL952233 eyeball .a 1066 to 1642 1 to 577       577/577
(100 %)
2 diff
(99.7 %id)
BQ636777 eye, retina .a 1090 to 1594 1 to 505       505/505
(100 %)
0 diff
(100 %id)
BI522380 pooled pancreas and spleen .a 1100 to 1809 740 to 10   fully sequenced,   731/740
(98 %)
25 diff
(96.7 %id)
BM705245 eye, RPE and Choroid .a 1132 to 1533 1 to 402   fully sequenced,   402/402
(100 %)
0 diff
(100 %id)
CR742431 brain, glioblastoma (pooled) .a 1139 to 1753 1 to 615       615/617
(99 %)
1 diff
(99.9 %id)
TI_153953631   .a 1160 to 1871 84 to 794   AAA   711/711
(100 %)
14 diff
(98.1 %id)
TI_154024530   .a 1163 to 1871 792 to 85   AAA   708/708
(100 %)
4 diff
(99.5 %id)
BU838626 epidermoid carcinoma, cell line, salivary gland .a 1199 to 1871 1 to 675   AAA   675/675
(100 %)
2 diff
(99.8 %id)
BQ638887 eye, retina .a 1206 to 1814 1 to 609       609/609
(100 %)
0 diff
(100 %id)
AI401192 brain, glioblastoma (pooled) .a 1206 to 1871 661 to 2       660/661
(99 %)
13 diff
(98.1 %id)
CA439675 lung, Metastatic Chondrosarcoma .a 1225 to 1871 665 to 19   AAA   647/647
(100 %)
1 diff
(99.9 %id)
BQ447764 Knee, Osteoarthritic Cartilage .a 1266 to 1871 624 to 19   AAA   606/606
(100 %)
0 diff
(100 %id)
BM686093 eye, Retina Foveal and Macular .a 1268 to 1555 1 to 288       288/288
(100 %)
7 diff
(97.6 %id)
BF347926 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1272 to 1877 1 to 606       606/837
(72 %)
11 diff
(98.7 %id)
BF432621 brain, glioblastoma (pooled) .a 1276 to 1591 316 to 1       316/316
(100 %)
6 diff
(98.2 %id)
AI807639 pooled .a 1278 to 1873 598 to 2       597/598
(99 %)
9 diff
(98.5 %id)
BQ180996 Knee, Osteoarthritic Cartilage .a 1300 to 1871 590 to 19   AAA   572/572
(100 %)
1 diff
(99.9 %id)
BG215786   .a 1312 to 1859 184 to 726       543/797
(68 %)
32 diff
(96.0 %id)
AI217302 pooled .a 1333 to 1877 547 to 4   tiling clone,   544/551
(98 %)
5 diff
(99.1 %id)
TI_153987627   .a 1334 to 1871 621 to 83   AAA   539/539
(100 %)
1 diff
(99.9 %id)
BQ636375 eye, retina .a 1337 to 1683 1 to 347       347/347
(100 %)
3 diff
(99.2 %id)
AW203990   .a 1354 to 1871 536 to 18   AAA   519/519
(100 %)
1 diff
(99.9 %id)
BQ639364 eye, retina .a 1374 to 1873 1 to 500       500/503
(99 %)
1 diff
(99.9 %id)
AI031854 brain, glioblastoma (pooled) .a 1377 to 1871 509 to 15   AAA   495/549
(90 %)
7 diff
(98.8 %id)
AA703552 liver and spleen .a 1378 to 1841 463 to 1       463/463
(100 %)
5 diff
(99.0 %id)
AA614424 breast .a 1380 to 1873 504 to 4       501/504
(99 %)
0 diff
(100 %id)
BG059548 brain, glioblastoma without EGFR amplification .a 1385 to 1872 489 to 1       489/490
(99 %)
28 diff
(94.3 %id)
BQ023129 placenta .a 1407 to 1871 483 to 19   AAA   465/465
(100 %)
3 diff
(99.4 %id)
BQ023128 placenta .a 1420 to 1871 470 to 19   AAA   452/452
(100 %)
0 diff
(100 %id)
BM708708 eye, RPE and Choroid .a 1424 to 1865 1 to 442   fully sequenced,   442/442
(100 %)
1 diff
(99.8 %id)
BU727958 eye, optic nerve .a 1425 to 1871 465 to 19   fully sequenced, AAA   447/447
(100 %)
0 diff
(100 %id)
AA018599 eye, retina .a 1430 to 1871 444 to 1       444/446
(99 %)
12 diff
(97.4 %id)
BU726722 eye, human retina .a 1444 to 1871 445 to 19   AAA   427/435
(98 %)
3 diff
(99.4 %id)
EB388449 eye, optic nerve .a 1451 to 1871 1 to 421   AAA   421/421
(100 %)
0 diff
(100 %id)
TI_153954229   .a 1453 to 1871 76 to 495   AAA   420/420
(100 %)
9 diff
(97.9 %id)
R12403 liver and spleen .a 1457 to 1870 436 to 8       429/449
(95 %)
0 diff
(100 %id)
AI674433 Prostate .a 1462 to 1871 410 to 1       410/410
(100 %)
0 diff
(100 %id)
BU736816 eye, RPE and Choroid .a 1503 to 1871 387 to 19   fully sequenced, AAA   369/369
(100 %)
0 diff
(100 %id)
AW023751 cochlea, ear .a 1527 to 1871 8 to 352       345/356
(96 %)
2 diff
(99.5 %id)
AA853419 Bone, Hip .a 1546 to 1844 306 to 9       298/306
(97 %)
0 diff
(100 %id)
EL952367 eyeball .a 1561 to 1871 1 to 311   AAA   311/311
(100 %)
4 diff
(98.8 %id)
BU535749 mixed (pool of 40 RNAs) .a 1588 to 1868 1 to 281       281/318
(88 %)
2 diff
(99.4 %id)
BG898577 cartilage .a 1590 to 1873 77 to 360   AAA   284/318
(89 %)
2 diff
(99.4 %id)
R05412 liver and spleen .a 1594 to 1877 288 to 1       288/288
(100 %)
14 diff
(95.2 %id)
BU726129 eye, Retina Foveal and Macular .a 1602 to 1833 278 to 47   AAA   232/261
(88 %)
0 diff
(100 %id)
AL712083 human skeletal muscle .a 1631 to 1871 1 to 241   AAA   241/241
(100 %)
0 diff
(100 %id)
T29277 brain .a 1652 to 1871 1 to 220       220/220
(100 %)
0 diff
(100 %id)
AW951235   .a 1653 to 1871 1 to 220   AAA   220/220
(100 %)
1 diff
(99.6 %id)
BU726671 eye, human retina .a 1665 to 1871 225 to 19   AAA   207/207
(100 %)
0 diff
(100 %id)
BU731899 eye, RPE and Choroid .a 1677 to 1875 217 to 19   fully sequenced, AAA   199/199
(100 %)
0 diff
(100 %id)
BF925346 nervous_tumor .a 1678 to 1875 1 to 198   AAA   198/198
(100 %)
0 diff
(100 %id)
F01742 brain, total brain .a 1699 to 1871 173 to 1       173/173
(100 %)
1 diff
(99.5 %id)
H84113 eye, retina .b 1 to 338 12 to 352       341/357
(95 %)
10 diff
(97.2 %id)
AA019516 eye, retina .b 1 to 261 11 to 274   tiling clone,   264/282
(93 %)
16 diff
(94.4 %id)
H86284 eye, retina .b 6 to 206 1 to 201       201/210
(95 %)
6 diff
(97.2 %id)
H83285 eye, retina .b 7 to 337 1 to 333       333/333
(100 %)
6 diff
(98.2 %id)
AA010961 eye, retina .b 7 to 355 1 to 354   tiling clone,   354/372
(95 %)
10 diff
(97.4 %id)
AA018137 eye, retina .b 7 to 392 1 to 397   tiling clone,   397/400
(99 %)
19 diff
(95.3 %id)
AA001085 eye, retina .b 10 to 368 1 to 361       361/453
(79 %)
10 diff
(97.8 %id)
BQ640397 eye, retina .b 259 to 845 8 to 594   tiling clone,   587/594
(98 %)
8 diff
(98.7 %id)
AA317658 retina .b 463 to 838 1 to 378   tiling clone,   378/378
(100 %)
4 diff
(99.0 %id)
AA019208 eye, retina .b 763 to 1246 489 to 1   tiling clone,   489/489
(100 %)
22 diff
(95.6 %id)
AA011016 eye, retina .b 808 to 1246 438 to 1   tiling clone,   438/439
(99 %)
8 diff
(98.2 %id)
H84114 eye, retina .b 832 to 1226 394 to 1       394/395
(99 %)
6 diff
(98.5 %id)
AA001048 eye, retina .b 861 to 1246 393 to 1       393/394
(99 %)
16 diff
(96.0 %id)
H83286 eye, retina .b 897 to 1227 334 to 1   tiling clone,   334/334
(100 %)
9 diff
(97.4 %id)
AA018185 eye, retina .b 913 to 1246 335 to 1       335/427
(78 %)
7 diff
(98.4 %id)
H86285 eye, retina .b 1005 to 1227 227 to 1   tiling clone,   227/227
(100 %)
5 diff
(97.8 %id)
BI260085 cervical carcinoma cell line, cervix .c 1 to 791 1 to 789 S20E T21Y M22H E23G Y24V ... tiling clone,   789/864
(91 %)
38 diff
(95.7 %id)
BI828739 brain, medulla .c 18 to 646 1 to 629   tiling clone,   629/629
(100 %)
0 diff
(100 %id)
TI_57172462   .c 18 to 646 31 to 659       629/659
(95 %)
6 diff
(99.1 %id)
BP216652 corpus callosum .d 1 to 584 1 to 583 E7R E8R T9R V10W V11* tiling clone,   583/583
(100 %)
2 diff
(99.7 %id)
BQ640535 eye, retina Gene ROM1, variant not shown         Suspected internal deletion, this clone was ignored    
AA954230 2 pooled tumors (clear cell type), Kidney Gene ROM1, variant not shown         Suspected internal deletion, this clone was ignored    
AI766733 2 pooled tumors (clear cell type), Kidney Gene ROM1, variant not shown         Suspected internal deletion, this clone was ignored    
BM689432 eye, Retina Foveal and Macular Gene ROM1, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
BU726597 eye, Retina Foveal and Macular Gene ROM1, variant not shown       fully sequenced, AAA Suspected internal deletion, this clone was ignored    
BM687980 eye, human retina Gene ROM1, variant not shown       fully sequenced, Suspected internal deletion, this clone was ignored    
BU726684 eye, human retina Gene ROM1, variant not shown       fully sequenced, AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI