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Gene RNF40TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
462 supporting clones for gene RNF40 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DA328615 hippocampus .a 1 to 568 2 to 569   tiling clone, capped   568/568
(100 %)
1 diff
(99.9 %id)
AL708593 human skeletal muscle .a 23 to 436 1 to 414       414/414
(100 %)
1 diff
(99.8 %id)
BP312731 mammary gland .a 24 to 604 1 to 580       580/582
(99 %)
3 diff
(99.5 %id)
DA191726 amygdala .a 25 to 610 2 to 587   capped   586/586
(100 %)
1 diff
(99.9 %id)
DC418304 trachea .a 26 to 225 1 to 201       201/201
(100 %)
2 diff
(99.1 %id)
DA238095 brain .a 27 to 607 2 to 583   capped   582/582
(100 %)
2 diff
(99.7 %id)
DA094177 cerebellum .a 30 to 583 2 to 555   capped   554/554
(100 %)
4 diff
(99.3 %id)
CR627431 cervix .a 32 to 4288 1 to 4257 E387K Q615R tiling clone, available from DKFZ, AAA   4257/4257
(100 %)
6 diff
(99.9 %id)
BX472755   .a 32 to 546 1 to 515       515/515
(100 %)
5 diff
(99.1 %id)
BP351482   .a 32 to 616 1 to 582       582/582
(100 %)
13 diff
(97.8 %id)
BP287811 lung .a 33 to 616 1 to 583       583/583
(100 %)
3 diff
(99.5 %id)
DA798150 brain .a 33 to 584 2 to 554   capped   553/553
(100 %)
3 diff
(99.5 %id)
BP320752 placenta .a 33 to 616 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
DA957477 Spleen .a 33 to 563 2 to 533   capped   532/532
(100 %)
3 diff
(99.5 %id)
BP353996   .a 33 to 615 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
DB076908 testis .a 33 to 578 2 to 548   capped   547/547
(100 %)
3 diff
(99.5 %id)
DA093701 cerebellum .a 34 to 593 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA096193 cerebellum .a 34 to 577 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DA097260 cerebellum .a 34 to 585 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA100066 cerebellum .a 34 to 580 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA105479 cerebellum .a 34 to 617 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA115228 cerebellum .a 34 to 596 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA124230 cerebellum .a 34 to 570 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DA185969 amygdala .a 34 to 568 2 to 536   capped   535/535
(100 %)
1 diff
(99.9 %id)
DA191974 amygdala .a 34 to 622 2 to 590   capped   589/596
(98 %)
3 diff
(99.5 %id)
DA245096 brain .a 34 to 618 2 to 586   capped   585/585
(100 %)
1 diff
(99.9 %id)
DA247995 brain .a 34 to 624 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
DA310781 hippocampus .a 34 to 506 2 to 474   capped   473/473
(100 %)
1 diff
(99.8 %id)
DA322623 hippocampus .a 34 to 589 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA324616 hippocampus .a 34 to 506 2 to 475   capped   474/474
(100 %)
2 diff
(99.6 %id)
DA326942 hippocampus .a 34 to 593 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA331583 hippocampus .a 34 to 593 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA338852 hippocampus .a 34 to 616 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
DA338983 hippocampus .a 34 to 620 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA404287 thalamus .a 34 to 605 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
DA412483 thalamus .a 34 to 570 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DA413484 thalamus .a 34 to 566 2 to 534   capped   533/533
(100 %)
1 diff
(99.9 %id)
DA456224 tongue, tumor tissue .a 34 to 606 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DA461318 tongue, tumor tissue .a 34 to 599 2 to 567   capped   566/567
(99 %)
2 diff
(99.7 %id)
DA501934 brain .a 34 to 580 2 to 548   capped   547/547
(100 %)
1 diff
(99.9 %id)
DA509921 brain .a 34 to 604 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
DA557995   .a 34 to 563 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
DA793076 brain .a 34 to 619 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
DA806166 brain .a 34 to 506 2 to 475   capped   474/474
(100 %)
3 diff
(99.4 %id)
DA811189 brain .a 34 to 607 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA855760 placenta .a 34 to 613 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DB060785 testis .a 34 to 593 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DB080828 testis .a 34 to 540 2 to 509   capped   508/508
(100 %)
2 diff
(99.7 %id)
DB094864 testis .a 34 to 598 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DB098718 testis .a 34 to 588 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DB146296 thymus .a 34 to 595 2 to 563   capped   562/564
(99 %)
2 diff
(99.7 %id)
DB150678 thymus .a 34 to 548 2 to 516   capped   515/515
(100 %)
3 diff
(99.5 %id)
DB154080 thymus .a 34 to 588 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DB214604 trachea .a 34 to 572 2 to 542   capped   541/541
(100 %)
5 diff
(99.1 %id)
DB222892 trachea .a 34 to 593 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DB278380 uterus .a 34 to 518 2 to 486   capped   485/485
(100 %)
1 diff
(99.8 %id)
DB278702 uterus .a 34 to 555 2 to 524   capped   523/523
(100 %)
2 diff
(99.7 %id)
DB289022 uterus .a 34 to 567 2 to 536   capped   535/535
(100 %)
2 diff
(99.7 %id)
DA698183   .a 35 to 606 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DA212695 brain .a 36 to 591 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA312985 hippocampus .a 36 to 559 2 to 525   capped   524/524
(100 %)
1 diff
(99.9 %id)
DA338022 hippocampus .a 36 to 611 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DB293731   .a 36 to 789 2 to 752   capped   751/751
(100 %)
13 diff
(98.3 %id)
DA437908 tongue, tumor tissue .a 40 to 593 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA193480 amygdala .a 41 to 645 2 to 606   capped   605/605
(100 %)
1 diff
(99.9 %id)
BM467687 leiomyosarcoma, uterus .a 46 to 949 1 to 912       912/1141
(79 %)
22 diff
(98.1 %id)
BM477820 leiomyosarcoma, uterus .a 63 to 523 1 to 461       461/1277
(36 %)
10 diff
(99.3 %id)
AL042150 testis .a 76 to 619 1 to 545       545/545
(100 %)
4 diff
(99.3 %id)
TI_149285405   .a 3513 to 4260 877 to 135   AAA   743/1052
(70 %)
45 diff
(95.8 %id)
DR159625 human embryonic stem cells differentiated toan early endodermal cell type .a 3589 to 4290 1 to 702       702/706
(99 %)
1 diff
(99.9 %id)
BM705224 eye, RPE and Choroid .a 3589 to 3948 1 to 360   fully sequenced,   360/360
(100 %)
0 diff
(100 %id)
BQ010157 Chondrosarcoma, Left Pubic Bone .a 3599 to 4287 707 to 19   AAA   689/689
(100 %)
0 diff
(100 %id)
BE782256 eye, retinoblastoma .a 3613 to 4279 1 to 663       663/665
(99 %)
6 diff
(99.1 %id)
CA448720 Chondrosarcoma, Left Pelvis .a 3628 to 4287 678 to 19   AAA   660/660
(100 %)
0 diff
(100 %id)
BF237969 leiomyosarcoma cell line, uterus .a 3635 to 4223 1 to 591       591/1087
(54 %)
15 diff
(98.7 %id)
TI_151750083   .a 3636 to 4287 748 to 90   AAA   659/1135
(58 %)
34 diff
(97.1 %id)
CA455415 adenocarcinoma, cell line, breast .a 3641 to 4287 1 to 647   AAA   647/647
(100 %)
0 diff
(100 %id)
BU680781 lung .a 3651 to 4287 655 to 19   AAA   637/637
(100 %)
1 diff
(99.9 %id)
CA308726 Alveolar Macrophage, lung .a 3656 to 4253 616 to 19   AAA   598/598
(100 %)
0 diff
(100 %id)
CA446651 Chondrosarcoma, Left Pubic Bone .a 3658 to 4287 648 to 19   AAA   630/630
(100 %)
0 diff
(100 %id)
CA450480 Human Lung Epithelial cells, lung .a 3669 to 4287 637 to 19   AAA   619/627
(98 %)
1 diff
(99.9 %id)
TI_154034177   .a 3694 to 4287 698 to 127   AAA   572/660
(86 %)
64 diff
(90.4 %id)
BE881931 leiomyosarcoma, uterus .a 3697 to 4276 1 to 579       579/579
(100 %)
3 diff
(99.5 %id)
CK820415 insulinoma, Pancreas .a 3698 to 4253 573 to 18   AAA   556/556
(100 %)
0 diff
(100 %id)
CA421728 Bone, Enchondroma cell line .a 3722 to 4287 584 to 19   AAA   566/566
(100 %)
9 diff
(98.5 %id)
BG164068 hypernephroma, cell line, Kidney .a 3729 to 4287 24 to 579   AAA   556/579
(96 %)
6 diff
(99.0 %id)
R33524 placenta .a 3750 to 4064 1 to 329   fully sequenced,   329/329
(100 %)
12 diff
(96.4 %id)
DB383672   .a 3750 to 4287 539 to 1       539/541
(99 %)
14 diff
(97.5 %id)
BI711116 insulinoma, Pancreas .a 3758 to 4253 513 to 18   AAA   496/496
(100 %)
0 diff
(100 %id)
BG164272 hypernephroma, cell line, Kidney .a 3781 to 4295 82 to 616       535/1140
(46 %)
41 diff
(96.5 %id)
AW247186 lung, small cell carcinoma .a 3789 to 4287 509 to 11   AAA   499/499
(100 %)
0 diff
(100 %id)
AA158464 Pancreas .a 3790 to 4223 1 to 440       440/440
(100 %)
9 diff
(98.0 %id)
BF438703 brain, glioblastoma (pooled) .a 3790 to 4287 498 to 2       497/498
(99 %)
0 diff
(100 %id)
AA453703 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3795 to 4285 1 to 489       489/489
(100 %)
5 diff
(99.0 %id)
DB383447   .a 3796 to 4287 500 to 1       500/500
(100 %)
14 diff
(97.2 %id)
AA292101 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3799 to 4049 1 to 251   fully sequenced,   251/251
(100 %)
0 diff
(100 %id)
AA456674 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3800 to 4260 471 to 12   AAA   460/460
(100 %)
1 diff
(99.8 %id)
AI369050 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 3803 to 4288 482 to 1       482/482
(100 %)
8 diff
(98.4 %id)
BF111333 pooled .a 3806 to 4290 489 to 5       485/489
(99 %)
0 diff
(100 %id)
AW471329 adenocarcinoma, Pancreas .a 3815 to 4253 453 to 15   AAA   439/439
(100 %)
2 diff
(99.6 %id)
AI348164 adenocarcinoma, colon .a 3817 to 4287 471 to 1       471/471
(100 %)
0 diff
(100 %id)
AW167923 serous papillary carcinoma, high grade, 2pooled tumors, uterus .a 3817 to 4288 472 to 1       472/472
(100 %)
1 diff
(99.8 %id)
EC491241 Prostate .a 3818 to 3916 1 to 99       99/99
(100 %)
0 diff
(100 %id)
AI056228 liver and spleen .a 3818 to 4287 481 to 12   AAA   470/470
(100 %)
0 diff
(100 %id)
BQ447901 Knee, Osteoarthritic Cartilage .a 3824 to 4287 482 to 19   AAA   464/466
(99 %)
17 diff
(96.4 %id)
AI768210 pooled .a 3827 to 4288 462 to 1       462/462
(100 %)
6 diff
(98.8 %id)
AI332645 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3828 to 4287 458 to 1       458/458
(100 %)
6 diff
(98.7 %id)
BP428708   .a 3830 to 4186 1 to 357       357/357
(100 %)
3 diff
(99.2 %id)
AA826716 invasive tumor (cell line), Prostate .a 3831 to 4257 427 to 1       427/427
(100 %)
4 diff
(99.1 %id)
AA779367 liver and spleen .a 3832 to 4286 457 to 3       455/457
(99 %)
0 diff
(100 %id)
DB513969 testis .a 3841 to 4287 1 to 448     Submitted on the opposite strand 448/448
(100 %)
12 diff
(97.4 %id)
AI143900   .a 3842 to 4290 449 to 1       449/449
(100 %)
1 diff
(99.8 %id)
TI_157597721   .a 3843 to 4253 558 to 147   AAA   412/478
(86 %)
15 diff
(96.9 %id)
T55464 fetal spleen, Spleen .a 3844 to 4227 389 to 1       389/389
(100 %)
8 diff
(98.0 %id)
AI421266 brain, glioblastoma (pooled) .a 3844 to 4287 463 to 20   AAA   444/444
(100 %)
1 diff
(99.8 %id)
AI985039 colon, colonic mucosa from 3 patients with Crohn'sdisease .a 3852 to 4290 440 to 5       436/442
(98 %)
0 diff
(100 %id)
AA931707 2 pooled tumors (clear cell type), Kidney .a 3854 to 4290 435 to 1       435/435
(100 %)
3 diff
(99.4 %id)
AI335905 uterus .a 3856 to 4253 408 to 11   AAA   398/398
(100 %)
4 diff
(99.0 %id)
BE857542 brain, glioblastoma (pooled) .a 3860 to 4287 428 to 1       428/428
(100 %)
2 diff
(99.6 %id)
AA565685 germ cell tumor .a 3867 to 4290 425 to 2       424/425
(99 %)
0 diff
(100 %id)
AI274287 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3868 to 4260 404 to 12   AAA   393/393
(100 %)
0 diff
(100 %id)
AI369624 anaplastic oligodendroglioma, brain .a 3868 to 4287 420 to 1       420/420
(100 %)
1 diff
(99.8 %id)
DB537265 hippocampus .a 3873 to 4287 1 to 422     Submitted on the opposite strand 422/422
(100 %)
14 diff
(96.7 %id)
AA250899 germinal center B cell .a 3877 to 4256 1 to 379   fully sequenced,   379/379
(100 %)
9 diff
(97.7 %id)
AI951511 breast, four pooled high-grade tumors, including twoprimary tumors and two metastatic to ovary .a 3877 to 4290 418 to 5       414/418
(99 %)
0 diff
(100 %id)
BF435552 sciatic nerve .a 3878 to 4288 411 to 1       411/411
(100 %)
2 diff
(99.6 %id)
AI241064 Kidney .a 3888 to 4287 398 to 1       398/398
(100 %)
6 diff
(98.5 %id)
AI890115 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .a 3891 to 4253 394 to 32   AAA   363/363
(100 %)
15 diff
(95.9 %id)
TI_59391822   .a 3906 to 4287 83 to 464   AAA   382/382
(100 %)
0 diff
(100 %id)
TI_59391986   .a 3906 to 4288 124 to 507       384/996
(38 %)
2 diff
(99.8 %id)
BM014033 breast, mammary adenocarcinoma, cell line .a 3907 to 4288 1 to 383       383/400
(95 %)
2 diff
(99.5 %id)
BM013880 breast, mammary adenocarcinoma, cell line .a 3907 to 4287 1 to 381   AAA   381/381
(100 %)
0 diff
(100 %id)
BU736801 eye, RPE and Choroid .a 3918 to 4287 388 to 19   fully sequenced, AAA   370/370
(100 %)
0 diff
(100 %id)
BM450854 eye, retinoblastoma .a 3922 to 4555 1 to 634   tiling clone,   634/927
(68 %)
13 diff
(98.6 %id)
AA431109   .a 3924 to 4281 1 to 352   fully sequenced,   352/352
(100 %)
5 diff
(98.6 %id)
BG055903 anaplastic oligodendroglioma, brain .a 3932 to 4290 365 to 7       359/365
(98 %)
0 diff
(100 %id)
AA257007 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3934 to 4253 320 to 1       320/320
(100 %)
1 diff
(99.7 %id)
T15511   .a 3942 to 4253 312 to 1       312/312
(100 %)
0 diff
(100 %id)
T15512   .a 3942 to 4253 312 to 1       312/312
(100 %)
0 diff
(100 %id)
AI688367 colon .a 3950 to 4288 339 to 1       339/339
(100 %)
2 diff
(99.5 %id)
AA528055 colon .a 3951 to 4290 340 to 1       340/340
(100 %)
1 diff
(99.8 %id)
AI688366 colon .a 3951 to 4288 338 to 1       338/338
(100 %)
2 diff
(99.5 %id)
AV703383 adrenal gland .a 3952 to 4290 1 to 339   AAA   339/424
(79 %)
1 diff
(99.8 %id)
T15597   .a 3953 to 4253 301 to 1       301/301
(100 %)
20 diff
(93.4 %id)
AI868427 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3955 to 4287 333 to 1       333/333
(100 %)
0 diff
(100 %id)
AI828976 lung, squamous cell carcinoma, poorlydifferentiated (4 pooled tumors, including primary andmetastatic) .a 3972 to 4288 341 to 26   AAA   316/316
(100 %)
17 diff
(94.7 %id)
AA512878 normal prostate, Prostate .a 3986 to 4290 306 to 2       305/306
(99 %)
0 diff
(100 %id)
AI246027 adenocarcinoma, colon .a 3995 to 4287 293 to 1       293/293
(100 %)
0 diff
(100 %id)
AA864515 pooled germ cell tumors .a 4003 to 4287 285 to 1       285/285
(100 %)
5 diff
(98.3 %id)
AW020080 cochlea, ear .a 4005 to 4287 1 to 283   AAA   283/283
(100 %)
4 diff
(98.6 %id)
BI491169 cochlea, ear .a 4010 to 4287 307 to 30   AAA   278/283
(98 %)
10 diff
(96.5 %id)
AW020137.
matches multiple genes
cochlea, ear .a 4010 to 4287 8 to 285   AAA also hits gene IQGAP2 278/285
(97 %)
6 diff
(97.9 %id)
AA729926 pooled germ cell tumors .a 4012 to 4288 277 to 1       277/277
(100 %)
1 diff
(99.7 %id)
AA292102 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4019 to 4287 269 to 1   fully sequenced,   269/269
(100 %)
0 diff
(100 %id)
EC509943 Prostate .a 4030 to 4121 1 to 92       92/92
(100 %)
0 diff
(100 %id)
AA629173 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 4031 to 4226 195 to 1       195/195
(100 %)
1 diff
(99.5 %id)
BM854816 stomach .a 4032 to 4253 1 to 222   AAA   222/241
(92 %)
1 diff
(99.6 %id)
R33428 placenta .a 4034 to 4280 259 to 9   fully sequenced,   251/259
(96 %)
6 diff
(97.7 %id)
AA432122   .a 4047 to 4290 243 to 1   fully sequenced,   243/243
(100 %)
1 diff
(99.6 %id)
AI866895 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 4085 to 4287 241 to 39   AAA   203/203
(100 %)
8 diff
(96.1 %id)
GD140476   .a 4117 to 4253 1 to 136   AAA   136/136
(100 %)
9 diff
(93.4 %id)
CA443423 Fibrosarcoma .a 4136 to 4287 170 to 19   AAA   152/152
(100 %)
2 diff
(98.7 %id)
AA911731 pooled germ cell tumors .a 4139 to 4260 122 to 1       122/122
(100 %)
0 diff
(100 %id)
AI128565 heart .a 4141 to 4287 147 to 1       147/147
(100 %)
2 diff
(98.7 %id)
AA250841 germinal center B cell .a 4181 to 4258 99 to 22   fully sequenced,   78/99
(78 %)
5 diff
(95.0 %id)
BQ637494 eye, retina .a 4239 to 4879 1 to 641   tiling clone,   641/641
(100 %)
1 diff
(99.9 %id)
BM474744 eye, retinoblastoma .a 4533 to 5024 42 to 535       494/1171
(42 %)
9 diff
(99.3 %id)
BM473700 melanotic melanoma, skin .a 4551 to 5314 1 to 770       770/1165
(66 %)
20 diff
(98.3 %id)
BF666292 brain, primitive neuroectoderm .a 4603 to 5295 1 to 684       684/857
(79 %)
13 diff
(98.5 %id)
TI_149292968   .a 4659 to 5377 793 to 80   AAA   714/726
(98 %)
11 diff
(98.5 %id)
BM975009 lung .a 4743 to 5377 652 to 19   tiling clone, AAA   634/634
(100 %)
4 diff
(99.4 %id)
BU631027 cell lines, Chondrosarcoma .a 4801 to 5372 591 to 19   AAA   573/573
(100 %)
2 diff
(99.7 %id)
BM987338 Bone, Subchondral Bone .a 4812 to 5377 584 to 19   AAA   566/566
(100 %)
4 diff
(99.3 %id)
TI_151787363   .a 4838 to 5379 84 to 625       542/982
(55 %)
30 diff
(97.0 %id)
BF439210 pooled .a 4846 to 5375 534 to 4       531/534
(99 %)
0 diff
(100 %id)
AI373490 Kidney .a 4973 to 5379 410 to 4   tiling clone,   407/410
(99 %)
0 diff
(100 %id)
BF683477 leiomyosarcoma cell line, uterus .a 5010 to 5372 1 to 362   AAA   362/362
(100 %)
1 diff
(99.8 %id)
BF685552 leiomyosarcoma cell line, uterus .a 5010 to 5372 1 to 361   AAA   361/361
(100 %)
2 diff
(99.5 %id)
BM682766 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 5119 to 5379 278 to 17   AAA   262/262
(100 %)
8 diff
(97.0 %id)
DB077915 testis .b 1 to 561 2 to 562   tiling clone, capped   561/561
(100 %)
1 diff
(99.9 %id)
DA185928 amygdala .b 21 to 559 2 to 540   tiling clone, capped   539/539
(100 %)
0 diff
(100 %id)
DC400140 testis .b 414 to 801 1 to 391   tiling clone,   391/391
(100 %)
5 diff
(98.8 %id)
NM_014771.2   .b 732 to 4961 1 to 4230 Q615R RefSeq, AAA   4230/4230
(100 %)
3 diff
(100.0 %id)
DB099260 testis .b 732 to 1319 2 to 589   capped   588/588
(100 %)
1 diff
(99.9 %id)
DA234662 brain .b 733 to 1325 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
DA808170 brain .b 734 to 1320 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA109451 cerebellum .b 739 to 1325 2 to 588   capped   587/588
(99 %)
2 diff
(99.7 %id)
DB099204 testis .b 739 to 1328 2 to 591   capped   590/590
(100 %)
2 diff
(99.7 %id)
DA101561 cerebellum .b 743 to 1332 2 to 591   capped   590/590
(100 %)
2 diff
(99.7 %id)
CN361650 embryonic stem cells, cell lines H1, H7, andH9 .b 743 to 1383 1 to 641       641/641
(100 %)
3 diff
(99.6 %id)
DA582707 lung .b 743 to 1332 2 to 591   capped   590/590
(100 %)
3 diff
(99.5 %id)
BQ420914 embryonal carcinoma, cell line, testis .b 743 to 1755 27 to 1045       1019/1096
(92 %)
59 diff
(94.7 %id)
DA332719 hippocampus .b 744 to 1340 2 to 599   capped   598/598
(100 %)
3 diff
(99.5 %id)
BX471988   .b 744 to 1396 1 to 654       654/654
(100 %)
5 diff
(99.3 %id)
TI_57242932   .b 744 to 1504 27 to 798   AAA   772/917
(84 %)
31 diff
(96.7 %id)
DA335308 hippocampus .b 745 to 1332 2 to 589   capped   588/588
(100 %)
2 diff
(99.7 %id)
DA418687 thalamus .b 745 to 1378 2 to 635   capped   634/634
(100 %)
2 diff
(99.7 %id)
DA530817 brain .b 745 to 1353 2 to 609   capped   608/608
(100 %)
3 diff
(99.6 %id)
DA113370 cerebellum .b 746 to 1344 2 to 600   capped   599/599
(100 %)
2 diff
(99.7 %id)
DA221403 brain .b 746 to 1337 2 to 592   capped   591/591
(100 %)
2 diff
(99.7 %id)
DA248627 brain .b 746 to 1332 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DA339880 hippocampus .b 746 to 1341 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DA339901 hippocampus .b 746 to 1338 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
DA382762 thalamus .b 746 to 1373 2 to 629   capped   628/628
(100 %)
1 diff
(99.9 %id)
DA402938 thalamus .b 746 to 1352 2 to 608   capped   607/607
(100 %)
2 diff
(99.7 %id)
DA410844 thalamus .b 746 to 1380 2 to 636   capped   635/635
(100 %)
2 diff
(99.7 %id)
DA445179 tongue, tumor tissue .b 746 to 1338 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
DA531603 brain .b 746 to 1357 2 to 612   capped   611/611
(100 %)
2 diff
(99.7 %id)
DA807851 brain .b 746 to 1346 2 to 602   capped   601/601
(100 %)
1 diff
(99.9 %id)
DA832869 placenta .b 746 to 1349 2 to 605   capped   604/609
(99 %)
3 diff
(99.6 %id)
DA854330 placenta .b 746 to 1338 2 to 595   capped   594/594
(100 %)
2 diff
(99.7 %id)
DB061396 testis .b 746 to 1271 2 to 527   capped   526/526
(100 %)
0 diff
(100 %id)
DB098344 testis .b 746 to 1332 2 to 589   capped   588/588
(100 %)
2 diff
(99.7 %id)
DB100407 testis .b 746 to 1340 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
DB100568 testis .b 746 to 1348 2 to 605   capped   604/604
(100 %)
3 diff
(99.6 %id)
DB155051 thymus .b 746 to 1342 2 to 598   capped   597/597
(100 %)
1 diff
(99.9 %id)
DB158600 thymus .b 746 to 1339 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
DB226089 trachea .b 746 to 1334 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DB233345 trachea .b 746 to 1343 2 to 601   capped   600/600
(100 %)
4 diff
(99.4 %id)
DA222589 brain .b 747 to 1371 2 to 626   capped   625/625
(100 %)
1 diff
(99.9 %id)
DA234925 brain .b 747 to 1338 2 to 594   capped   591/593
(99 %)
3 diff
(99.5 %id)
DA245605 brain .b 747 to 1342 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
DB232902 trachea .b 748 to 1346 2 to 600   capped   599/599
(100 %)
2 diff
(99.7 %id)
DA404465 thalamus .b 749 to 1341 2 to 594   capped   593/593
(100 %)
2 diff
(99.7 %id)
AL519586 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .b 749 to 1625 10 to 884       875/884
(98 %)
12 diff
(98.7 %id)
AL543292 placenta, Placenta Cot 25-normalized .b 750 to 1769 12 to 1018       1007/1018
(98 %)
24 diff
(97.7 %id)
BM802383 duodenal adenocarcinoma, cell line, small intestine .b 751 to 1586 1 to 842   tiling clone,   840/929
(90 %)
22 diff
(97.7 %id)
DR002267 fetal brain .b 752 to 1420 1 to 667       667/672
(99 %)
7 diff
(99.0 %id)
DA318966 hippocampus .b 753 to 1343 2 to 592   capped   591/591
(100 %)
2 diff
(99.7 %id)
DB232457 trachea .b 753 to 1351 2 to 600   capped   599/599
(100 %)
1 diff
(99.9 %id)
BX362747   .b 758 to 1484 19 to 743       725/743
(97 %)
8 diff
(99.0 %id)
BX384984   .b 758 to 1504 19 to 763       745/763
(97 %)
10 diff
(98.7 %id)
BM453778 melanotic melanoma, skin .b 758 to 1504 1 to 749       749/889
(84 %)
7 diff
(99.3 %id)
CN361648 embryonic stem cells, cell lines H1, H7, andH9 .b 761 to 1395 1 to 635       635/635
(100 %)
2 diff
(99.7 %id)
CN308109 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 762 to 1421 1 to 660       660/660
(100 %)
3 diff
(99.6 %id)
BG831523 epithelioid carcinoma cell line, Pancreas .b 762 to 1439 1 to 674       674/674
(100 %)
6 diff
(99.2 %id)
BM456922 embryonal carcinoma, cell line, testis .b 762 to 1507 1 to 750       750/1107
(67 %)
9 diff
(99.2 %id)
BQ438236 leiomyosarcoma, uterus .b 762 to 1367 1 to 608       608/957
(63 %)
5 diff
(99.5 %id)
AB014561 brain .b 763 to 4961 1 to 4199 Q615R tiling clone, available from KIAA,   4199/4199
(100 %)
3 diff
(100.0 %id)
BM452399 eye, retinoblastoma .b 764 to 1504 1 to 742       742/1049
(70 %)
16 diff
(98.5 %id)
BM466033 embryonal carcinoma, cell line, testis .b 764 to 1424 1 to 662       662/1225
(54 %)
23 diff
(98.2 %id)
CN308106 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 765 to 1368 1 to 604       604/604
(100 %)
3 diff
(99.6 %id)
BC006133 Brain, neuroblastoma .b 768 to 4934 1 to 4167 Q615R available from MGC, AAA   4167/4167
(100 %)
4 diff
(100.0 %id)
BC011769 Uterus, endometrium adenocarcinoma .b 768 to 4961 1 to 4194 Q615R available from MGC, AAA   4194/4194
(100 %)
3 diff
(100.0 %id)
BC018647 Skin, melanotic melanoma. .b 768 to 4961 1 to 4194   available from MGC, AAA   4194/4194
(100 %)
3 diff
(100.0 %id)
BQ278522 adenocarcinoma, cell line, breast .b 771 to 1507 1 to 745       745/913
(81 %)
13 diff
(98.6 %id)
AL558159 T cells from T cell leukemia .b 775 to 1576 1 to 811       773/998
(77 %)
15 diff
(98.5 %id)
TI_57170922   .b 775 to 1463 20 to 721       702/721
(97 %)
29 diff
(96.0 %id)
BE252621 eye, retinoblastoma .b 788 to 1393 1 to 610       610/610
(100 %)
5 diff
(99.2 %id)
BM905089 melanotic melanoma, skin .b 792 to 1772 1 to 994       994/1014
(98 %)
35 diff
(96.6 %id)
CN308103 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 813 to 1436 1 to 624       624/624
(100 %)
2 diff
(99.7 %id)
DR002229 fetal brain .b 820 to 1526 1 to 709       709/709
(100 %)
6 diff
(99.2 %id)
DB133089 thymus .b 833 to 1382 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
DB066637 testis .b 835 to 1369 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
TI_1948087660   .b 854 to 1625 136 to 906       771/1360
(56 %)
12 diff
(99.2 %id)
TI_1948087827   .b 854 to 1768 136 to 1050       915/1296
(70 %)
40 diff
(97.0 %id)
TI_1948088181   .b 854 to 1773 137 to 1064       928/1320
(70 %)
29 diff
(97.9 %id)
CV026959 mixed .b 855 to 1477 1 to 623       623/623
(100 %)
4 diff
(99.4 %id)
DA313382 hippocampus .b 873 to 1435 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
TI_1948088005   .b 885 to 1625 156 to 896       741/1295
(57 %)
21 diff
(98.4 %id)
DA809035 brain .b 951 to 1492 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
BG979851 colon_normal .b 1004 to 1296 346 to 51       295/346
(85 %)
1 diff
(99.8 %id)
DB293918   .b 1005 to 1771 2 to 766   capped   765/782
(97 %)
13 diff
(98.4 %id)
DA570964 whole embryo, mainly head .b 1015 to 1863 2 to 847   capped   846/846
(100 %)
11 diff
(98.7 %id)
CA389777 eye, RPE/choroid .b 1051 to 1753 1 to 703       703/703
(100 %)
0 diff
(100 %id)
DA098371 cerebellum .b 1059 to 1608 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
BG989958 head_neck .b 1062 to 1184 1 to 122       122/122
(100 %)
5 diff
(96.0 %id)
DA190646 amygdala .b 1063 to 1667 2 to 606   capped   605/605
(100 %)
0 diff
(100 %id)
BF848344 lung_normal .b 1080 to 1474 395 to 1     Submitted on the opposite strand 395/395
(100 %)
1 diff
(99.8 %id)
BP339683 Spleen .b 1086 to 1668 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BE397378 Burkitt lymphoma, lymph .b 1121 to 1772 30 to 680       651/925
(70 %)
10 diff
(99.0 %id)
BE397560 Burkitt lymphoma, lymph .b 1121 to 1843 29 to 748       720/825
(87 %)
18 diff
(97.9 %id)
BQ933392 large cell carcinoma, lung .b 1135 to 2064 1 to 932       932/932
(100 %)
7 diff
(99.3 %id)
DA312326 hippocampus .b 1145 to 1685 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DB069224 testis .b 1148 to 1665 10 to 527   capped   518/518
(100 %)
0 diff
(100 %id)
BQ222726 leiomyosarcoma, uterus .b 1165 to 1772 12 to 622       611/1305
(46 %)
15 diff
(98.9 %id)
DA322582 hippocampus .b 1190 to 1740 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
BG683325 brain, neuroblastoma, cell line .b 1251 to 1978 1 to 748       724/768
(94 %)
25 diff
(96.8 %id)
BU931202 ovary, teratocarcinoma, cell line .b 1296 to 1973 1 to 682       682/950
(71 %)
6 diff
(99.4 %id)
DA335389 hippocampus .b 1310 to 1900 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
BQ933846 epidermoid carcinoma, cell line, lung .b 1326 to 2145 1 to 822       822/895
(91 %)
3 diff
(99.7 %id)
CN361646 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 1363 to 1987 1 to 625       625/625
(100 %)
1 diff
(99.9 %id)
BF794449 lymph, lymphoma, cell line .b 1386 to 2144 1 to 769       769/837
(91 %)
28 diff
(96.7 %id)
DA217481 brain .b 1482 to 2015 2 to 535   capped   534/534
(100 %)
0 diff
(100 %id)
BQ437043 embryonal carcinoma, cell line, testis .b 1517 to 2284 1 to 768       768/899
(85 %)
4 diff
(99.6 %id)
DA068880 cerebellum .b 1522 to 2029 2 to 509   capped   508/508
(100 %)
0 diff
(100 %id)
BG773615 choriocarcinoma, placenta .b 1609 to 2284 1 to 681       681/686
(99 %)
9 diff
(98.7 %id)
DB087531 testis .b 1643 to 2200 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
BP287814 lung .b 1666 to 2247 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BE620490 large cell carcinoma, undifferentiated, lung .b 1693 to 2405 1 to 709       709/776
(91 %)
18 diff
(97.7 %id)
BU553774 ovary, teratocarcinoma, cell line .b 1702 to 2509 24 to 835       812/957
(84 %)
23 diff
(97.6 %id)
DA378343 thalamus .b 1710 to 2200 2 to 492   capped   491/491
(100 %)
0 diff
(100 %id)
BP287793 lung .b 1710 to 2292 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP238622 Liver .b 1728 to 2315 1 to 588       588/588
(100 %)
5 diff
(99.2 %id)
AU309695 neuroblastoma .b 1734 to 2405 1 to 671       671/716
(93 %)
6 diff
(99.2 %id)
BU158070 ductal carcinoma, cell line, Pancreas .b 1754 to 2506 1 to 754       754/947
(79 %)
13 diff
(98.7 %id)
BU179835 ductal carcinoma, cell line, Pancreas .b 1754 to 2507 1 to 755       755/757
(99 %)
12 diff
(98.5 %id)
BU196586 ductal carcinoma, cell line, Pancreas .b 1754 to 2509 1 to 754       754/865
(87 %)
10 diff
(98.9 %id)
BU163233 ductal carcinoma, cell line, Pancreas .b 1754 to 2506 1 to 756       756/760
(99 %)
10 diff
(98.7 %id)
BU157598 ductal carcinoma, cell line, Pancreas .b 1754 to 2506 1 to 753       753/909
(82 %)
5 diff
(99.5 %id)
BQ685574 ductal carcinoma, cell line, Pancreas .b 1754 to 2495 1 to 742       742/755
(98 %)
3 diff
(99.7 %id)
BQ691549 ductal carcinoma, cell line, Pancreas .b 1754 to 2503 1 to 746       746/754
(98 %)
8 diff
(99.0 %id)
BQ688446 ductal carcinoma, cell line, Pancreas .b 1754 to 2495 1 to 740   AAA Internal priming: the 3' end of the oligo dT primed clone lies in the CDS 740/757
(97 %)
6 diff
(99.3 %id)
BQ689584 ductal carcinoma, cell line, Pancreas .b 1754 to 2481 1 to 728       728/754
(96 %)
1 diff
(99.9 %id)
BQ685896 ductal carcinoma, cell line, Pancreas .b 1754 to 2483 1 to 732       732/762
(96 %)
6 diff
(99.3 %id)
BQ687874 ductal carcinoma, cell line, Pancreas .b 1754 to 2484 1 to 733       733/763
(96 %)
6 diff
(99.3 %id)
BU521761 leiomyosarcoma, uterus .b 1828 to 2515 1 to 692       692/893
(77 %)
8 diff
(99.2 %id)
CN361643 embryonic stem cells, cell lines H1, H7, andH9 .b 1835 to 2452 1 to 618       618/618
(100 %)
0 diff
(100 %id)
DA759052   .b 1848 to 2397 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
BC030802 Breast, mammary adenocarcinoma. .b 1874 to 4927 1 to 3054   available from MGC, AAA   3054/3054
(100 %)
2 diff
(100.0 %id)
TI_154165998   .b 1900 to 2398 80 to 578       499/500
(99 %)
11 diff
(97.8 %id)
TI_57215511   .b 1999 to 2895 38 to 927       890/927
(96 %)
31 diff
(96.7 %id)
BI755318 brain .b 2000 to 2895 1 to 889       889/889
(100 %)
24 diff
(97.4 %id)
TI_154186531   .b 2067 to 2813 43 to 784       742/742
(100 %)
14 diff
(98.2 %id)
CF125696 Chondrosarcoma Lung Metastasis cell lines, lung .b 2068 to 2709 1 to 641       641/641
(100 %)
7 diff
(99.0 %id)
TI_57230619   .b 2091 to 2723 53 to 716       614/686
(89 %)
33 diff
(95.2 %id)
BM049504 carcinoma, cell line, Prostate .b 2099 to 2783 1 to 687       687/687
(100 %)
4 diff
(99.5 %id)
BG393671 embryonal carcinoma, cell line, testis .b 2114 to 2840 1 to 722       722/768
(94 %)
15 diff
(98.1 %id)
CN361645 embryonic stem cells, cell lines H1, H7, andH9 .b 2143 to 2496 1 to 354       354/354
(100 %)
0 diff
(100 %id)
BG106284 lymph, lymphoma, cell line .b 2238 to 2954 1 to 721       721/924
(78 %)
14 diff
(98.5 %id)
DB028094 testis .b 2250 to 2620 2 to 372   capped   371/371
(100 %)
0 diff
(100 %id)
DA919323 small intestine .b 2292 to 2666 2 to 376   capped   375/375
(100 %)
0 diff
(100 %id)
CX786572 human embryonic stem cells .b 2542 to 3339 1 to 798       798/798
(100 %)
1 diff
(99.9 %id)
AL525794 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 2590 to 3487 1 to 901       795/901
(88 %)
55 diff
(93.9 %id)
BQ920768 carcinoma, cell line, Prostate .b 2707 to 3437 1 to 734       734/862
(85 %)
11 diff
(98.8 %id)
BU542729 carcinoma, cell line, Prostate .b 2707 to 3396 1 to 692       692/806
(85 %)
17 diff
(97.9 %id)
CB156733 brain .b 2747 to 3375 1 to 629       629/629
(100 %)
1 diff
(99.9 %id)
TI_57232571   .b 2757 to 3593 31 to 865       835/865
(96 %)
12 diff
(98.7 %id)
BX367206   .b 2758 to 3796 1 to 1038       1038/1038
(100 %)
24 diff
(97.7 %id)
BI907375 leukocyte .b 2760 to 3593 1 to 832       832/832
(100 %)
7 diff
(99.2 %id)
DA676194   .b 2821 to 3413 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
BG765615 melanotic melanoma, high MDR (cell line), skin .b 2823 to 3644 1 to 821       821/821
(100 %)
12 diff
(98.6 %id)
BG251990 adenocarcinoma, cell line, Liver .b 2831 to 3562 13 to 743       731/751
(97 %)
18 diff
(97.7 %id)
BF984956 duodenal adenocarcinoma, cell line, small intestine .b 2834 to 3170 2 to 338       337/338
(99 %)
0 diff
(100 %id)
BC113827 PCR rescued clones .b 2859 to 3606 11 to 758       748/765
(97 %)
11 diff
(98.6 %id)
BM558177 astrocytoma grade IV, cell line, brain .b 2873 to 3721 17 to 869       853/1068
(79 %)
23 diff
(97.9 %id)
BM560719 astrocytoma grade IV, cell line, brain .b 2879 to 3850 23 to 1009       987/1079
(91 %)
36 diff
(96.7 %id)
BM909977 astrocytoma grade IV, cell line, brain .b 2881 to 3879 1 to 1013       1013/1019
(99 %)
24 diff
(97.7 %id)
DA418954 cord Blood .b 2884 to 3596 2 to 709   capped   708/708
(100 %)
10 diff
(98.6 %id)
BM010593 amelanotic melanoma, cell line, skin .b 2891 to 3723 1 to 843       841/843
(99 %)
23 diff
(97.3 %id)
TI_59385424   .b 2891 to 3723 107 to 949       841/843
(99 %)
23 diff
(97.3 %id)
BM915529 amelanotic melanoma, cell line, skin .b 2895 to 3875 1 to 984       984/1055
(93 %)
11 diff
(99.0 %id)
BE297533 muscle, rhabdomyosarcoma .b 2898 to 3575 1 to 675       675/734
(91 %)
17 diff
(97.7 %id)
AI905604 breast .b 2899 to 3408 552 to 46       507/570
(88 %)
7 diff
(98.8 %id)
AW751710 colon .b 2906 to 3046 1 to 141       141/141
(100 %)
9 diff
(93.7 %id)
TI_1948088006   .b 2945 to 3859 1044 to 123       922/1315
(70 %)
36 diff
(97.3 %id)
CK000382 mixed .b 2958 to 3754 8 to 799       790/803
(98 %)
23 diff
(97.2 %id)
TI_1948087661   .b 2965 to 3859 1019 to 124       896/1275
(70 %)
17 diff
(98.7 %id)
TI_1948087828   .b 2965 to 3859 1026 to 125       902/1273
(70 %)
32 diff
(97.5 %id)
CV364002 lung_normal .b 2986 to 3162 1 to 184       182/187
(97 %)
19 diff
(89.9 %id)
BG470893 eye, retinoblastoma .b 3010 to 3633 1 to 626       626/626
(100 %)
6 diff
(99.1 %id)
BM918011 blood, natural killer cells, cell line .b 3010 to 3684 15 to 690       676/1106
(61 %)
17 diff
(98.5 %id)
BQ711853 Spleen .b 3011 to 3918 1 to 917       917/929
(98 %)
33 diff
(96.5 %id)
TI_59390131   .b 3024 to 3875 102 to 952       851/851
(100 %)
25 diff
(97.1 %id)
BM549867 astrocytoma grade IV, cell line, brain .b 3026 to 3902 28 to 909       882/1007
(87 %)
34 diff
(96.7 %id)
BM019446 astrocytoma grade IV, cell line, brain .b 3027 to 3875 1 to 848       848/848
(100 %)
25 diff
(97.1 %id)
BX644728   .b 3040 to 3759 5 to 724       720/724
(99 %)
7 diff
(99.1 %id)
TI_57196868   .b 3042 to 3828 59 to 846       786/849
(92 %)
12 diff
(98.6 %id)
BI824772 pooled brain, lung, testis .b 3052 to 3771 1 to 720       720/720
(100 %)
1 diff
(99.9 %id)
BU855039 ovary, teratocarcinoma, cell line .b 3066 to 3755 1 to 698       698/821
(85 %)
15 diff
(98.2 %id)
BE389620 endometrium, adenocarcinoma cell line, uterus .b 3071 to 3688 1 to 618       618/735
(84 %)
10 diff
(98.7 %id)
BI042624 ovary .b 3087 to 3309 1 to 223       223/223
(100 %)
0 diff
(100 %id)
TI_1948088182   .b 3098 to 3859 891 to 125       767/1327
(57 %)
7 diff
(99.5 %id)
BY798705 eye .b 3119 to 3723 1 to 606       606/606
(100 %)
3 diff
(99.6 %id)
BG281821 melanotic melanoma, skin .b 3131 to 3922 1 to 793       793/794
(99 %)
18 diff
(97.8 %id)
CX753294 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 3135 to 3875 1 to 738     Submitted on the opposite strand 738/742
(99 %)
5 diff
(99.4 %id)
BM724065 eye, fetal eye .b 3141 to 3757 1 to 618       618/618
(100 %)
2 diff
(99.7 %id)
BE302734 melanotic melanoma, skin .b 3168 to 3799 1 to 632       632/636
(99 %)
10 diff
(98.5 %id)
BE274433 melanotic melanoma, skin .b 3186 to 3912 1 to 725       725/738
(98 %)
6 diff
(99.2 %id)
BE388432 endometrium, adenocarcinoma cell line, uterus .b 3186 to 3868 1 to 680       680/683
(99 %)
10 diff
(98.6 %id)
BF025941 melanotic melanoma, skin .b 3186 to 3925 1 to 740       740/1050
(70 %)
16 diff
(98.5 %id)
BU508318 leiomyosarcoma, uterus .b 3190 to 4012 1 to 836       836/931
(89 %)
22 diff
(97.7 %id)
TI_154171545   .b 3200 to 3641 79 to 524       446/992
(44 %)
7 diff
(99.3 %id)
BU526651 epidermoid carcinoma, cell line, lung .b 3234 to 4004 1 to 777       777/886
(87 %)
15 diff
(98.4 %id)
TI_154188335   .b 3284 to 4070 119 to 892       774/908
(85 %)
35 diff
(96.2 %id)
DB046140 testis .b 3306 to 3879 2 to 574   capped   573/573
(100 %)
4 diff
(99.4 %id)
BQ671194 epidermoid carcinoma, cell line, salivary gland .b 3316 to 4109 1 to 801       801/841
(95 %)
14 diff
(98.4 %id)
TI_57216901   .b 3324 to 3937 37 to 650       614/730
(84 %)
16 diff
(97.9 %id)
BE792003 lung, small cell carcinoma .b 3373 to 3502 1 to 125       125/135
(92 %)
12 diff
(91.2 %id)
AW247410 lung, small cell carcinoma .b 3450 to 3692 1 to 243       243/248
(97 %)
5 diff
(98.0 %id)
BQ062152 lymph, lymphoma, cell line .b 3519 to 4443 1 to 940       940/1037
(90 %)
28 diff
(97.3 %id)
BU173478 leiomyosarcoma, uterus .b 3537 to 4412 1 to 892       892/895
(99 %)
22 diff
(97.6 %id)
TI_43963740   .b 3550 to 4252 30 to 743   fully sequenced,   714/743
(96 %)
23 diff
(97.0 %id)
BG396858 eye, retinoblastoma .b 3583 to 4416 1 to 815       815/822
(99 %)
34 diff
(95.9 %id)
BM802447 duodenal adenocarcinoma, cell line, small intestine .b 3626 to 4412 11 to 810       800/999
(80 %)
42 diff
(95.8 %id)
BG769118 melanotic melanoma, high MDR (cell line), skin .b 3639 to 4442 1 to 807       807/807
(100 %)
23 diff
(97.2 %id)
BM694979 eye, RPE and Choroid .b 3690 to 4195 1 to 506       506/506
(100 %)
0 diff
(100 %id)
CD626122   .b 3706 to 3922 1 to 216       216/220
(98 %)
7 diff
(96.9 %id)
BE887585 leiomyosarcoma, uterus .b 3777 to 4467 1 to 698       698/1048
(66 %)
14 diff
(98.7 %id)
CN361647 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .b 3843 to 4126 1 to 284       284/284
(100 %)
0 diff
(100 %id)
AL569870 placenta, Placenta Cot 25-normalized .b 3849 to 4944 1087 to 1       1087/1123
(96 %)
20 diff
(98.3 %id)
BX367205   .b 3875 to 4946 1067 to 6       1062/1067
(99 %)
0 diff
(100 %id)
AL044720 testis .b 3878 to 4017 1 to 140       140/140
(100 %)
0 diff
(100 %id)
AL519585 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .b 3886 to 4913 1023 to 1       1023/1034
(98 %)
21 diff
(98.0 %id)
BP422431 small intestine .b 3895 to 4396 1 to 502     Submitted on the opposite strand 502/502
(100 %)
0 diff
(100 %id)
BQ063646 lymph, lymphoma, cell line .b 3899 to 4504 213 to 823       611/1097
(55 %)
23 diff
(98.0 %id)
Z43896 brain, total brain .b 3917 to 4210 1 to 294       294/294
(100 %)
0 diff
(100 %id)
BP305334   .b 3939 to 4521 1 to 583       583/583
(100 %)
0 diff
(100 %id)
CN361651 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .b 3957 to 4613 12 to 669       658/669
(98 %)
6 diff
(99.2 %id)
EL954479 eyeball .b 3959 to 4469 1 to 510       510/510
(100 %)
5 diff
(99.1 %id)
BM020474 astrocytoma grade IV, cell line, brain .b 3973 to 4735 1 to 763       763/763
(100 %)
2 diff
(99.8 %id)
TI_59391261   .b 3973 to 4735 115 to 877       763/763
(100 %)
2 diff
(99.8 %id)
BG819882 anaplastic oligodendroglioma with 1p/19qloss, brain .b 3992 to 4736 1 to 747       747/747
(100 %)
6 diff
(99.2 %id)
AA442340   .b 3998 to 4086 1 to 89       89/89
(100 %)
0 diff
(100 %id)
BI710774 insulinoma, Pancreas .b 4045 to 4230 8 to 193       186/193
(96 %)
6 diff
(96.9 %id)
CK820416 insulinoma, Pancreas .b 4045 to 4607 8 to 570       563/570
(98 %)
6 diff
(99.0 %id)
TI_154105578   .b 4045 to 4961 992 to 90   AAA   903/965
(93 %)
25 diff
(97.5 %id)
BI907779 leukocyte .b 4078 to 4861 1 to 776       776/777
(99 %)
18 diff
(97.7 %id)
TI_57234372   .b 4078 to 4861 29 to 804       776/805
(96 %)
18 diff
(97.8 %id)
AL580056 T cells from T cell leukemia .b 4084 to 4881 832 to 34       799/922
(86 %)
0 diff
(100 %id)
BE885885 leiomyosarcoma, uterus .b 4089 to 4711 1 to 621       621/621
(100 %)
3 diff
(99.6 %id)
BI114822 muscle, rhabdomyosarcoma .b 4092 to 4912 1 to 822       822/823
(99 %)
13 diff
(98.5 %id)
BQ438214 leiomyosarcoma, uterus .b 4106 to 4955 12 to 861       850/861
(98 %)
7 diff
(99.2 %id)
TI_149285141   .b 4111 to 4961 931 to 94   AAA   838/1039
(80 %)
28 diff
(97.4 %id)
AA158054 Pancreas .b 4120 to 4576 1 to 458   fully sequenced,   458/458
(100 %)
8 diff
(98.3 %id)
BX384983   .b 4137 to 4934 800 to 1       800/800
(100 %)
5 diff
(99.4 %id)
TI_154113130   .b 4138 to 4961 923 to 108   AAA   816/936
(87 %)
10 diff
(99.0 %id)
BX362746   .b 4159 to 4925 780 to 14       767/780
(98 %)
0 diff
(100 %id)
TI_149293058   .b 4164 to 4961 862 to 82   AAA   781/799
(97 %)
25 diff
(96.9 %id)
TI_43963741   .b 4222 to 4893 673 to 1   fully sequenced,   673/673
(100 %)
28 diff
(95.9 %id)
AL562567 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .b 4247 to 4879 650 to 17       634/738
(85 %)
0 diff
(100 %id)
BU731769 eye, RPE and Choroid .b 4307 to 4961 673 to 19   AAA   655/655
(100 %)
1 diff
(99.9 %id)
DB379285 placenta .b 4534 to 4961 427 to 1       427/427
(100 %)
4 diff
(99.1 %id)
AA158055 Pancreas .b 4546 to 4931 386 to 1   fully sequenced,   386/386
(100 %)
3 diff
(99.3 %id)
AW248501 lung, small cell carcinoma .b 4568 to 4927 370 to 11   AAA   360/360
(100 %)
0 diff
(100 %id)
DB383863   .b 4588 to 4961 374 to 1       374/376
(99 %)
2 diff
(99.5 %id)
F03139 brain, total brain .b 4615 to 4927 313 to 1       313/313
(100 %)
0 diff
(100 %id)
AK291666 placenta .c 1 to 3311 1 to 3311 Q615R tiling clone,   3311/3311
(100 %)
5 diff
(99.9 %id)
DB293370   .d 1 to 701 5 to 706   tiling clone, capped   705/707
(99 %)
4 diff
(99.5 %id)
AK027406   .d 4 to 3920 1 to 3917 N56D L108P S172G Q515R D614N tiling clone, available from FLJ,   3917/3917
(100 %)
8 diff
(99.8 %id)
DA834566 placenta .d 5 to 701 2 to 699   capped   698/700
(99 %)
3 diff
(99.6 %id)
DB293490   .d 5 to 683 2 to 680   capped   679/679
(100 %)
2 diff
(99.8 %id)
DB328110 placenta .d 3385 to 3920 538 to 1       538/538
(100 %)
10 diff
(98.2 %id)
DB383427   .d 3489 to 3920 433 to 1       433/433
(100 %)
1 diff
(99.8 %id)
DB383309   .d 3621 to 3920 300 to 1       300/300
(100 %)
3 diff
(99.0 %id)
DB293100   .e 1 to 720 10 to 729   tiling clone, capped   728/732
(99 %)
10 diff
(98.7 %id)
AF122819   .e 8 to 4286 1 to 4279 R96L Q615R tiling clone, AAA   4279/4279
(100 %)
4 diff
(100.0 %id)
BG979222 colon_normal .e 2364 to 2653 303 to 6       298/308
(96 %)
0 diff
(100 %id)
BI020524 marrow .e 2546 to 2745 1 to 198       198/207
(95 %)
6 diff
(97.2 %id)
DB383038   .e 3843 to 4286 444 to 1       444/444
(100 %)
1 diff
(99.8 %id)
AK297531 brain .f 1 to 2634 1 to 2634 L154Q Q307R tiling clone,   2634/2634
(100 %)
4 diff
(99.9 %id)
DC352783 brain .f 1 to 539 1 to 539       539/539
(100 %)
1 diff
(99.9 %id)
DC320817 brain .f 4 to 386 1 to 384       384/384
(100 %)
2 diff
(99.5 %id)
DA511570 brain .g 1 to 585 2 to 586   tiling clone, capped   585/585
(100 %)
0 diff
(100 %id)
BQ881258 dorsal root ganglia .g 223 to 985 1 to 773   tiling clone,   773/833
(92 %)
13 diff
(98.5 %id)
FN060360 breast carcinoma .g 785 to 851 67 to 1     Submitted on the opposite strand 67/70
(95 %)
0 diff
(100 %id)
BP288247 lung .h 1 to 584 1 to 583 exact tiling clone,   583/583
(100 %)
2 diff
(99.7 %id)
CN308107 embryonic stem cells, DMSO-treated H9 cellline .i 1 to 536 1 to 536 R2P tiling clone,   536/536
(100 %)
5 diff
(99.1 %id)
DB071412 testis .j 1 to 539 7 to 546 D12* tiling clone, capped   545/545
(100 %)
2 diff
(99.7 %id)
BG290875 bladder, transitional cell papilloma, cell line .k 1 to 659 1 to 662 exact tiling clone,   662/1029
(64 %)
15 diff
(98.6 %id)
DB070393 testis .l 1 to 475 9 to 483 P137S E140* tiling clone, capped   482/482
(100 %)
4 diff
(99.2 %id)
BM263806 Pancreas, Purified pancreatic islet .m-u 1 to 514 1 to 515 Y21S T78H E79R P80A R81S ... tiling clone,   515/515
(100 %)
4 diff
(99.3 %id)
BX105695 Kidney .m-u 194 to 372 1 to 179       179/179
(100 %)
0 diff
(100 %id)
AI793034 Kidney .m-u 194 to 660 1 to 467   tiling clone,   467/467
(100 %)
3 diff
(99.4 %id)
CA389643 eye, RPE/choroid .m-u 217 to 398 183 to 1       183/183
(100 %)
1 diff
(99.5 %id)
BM263495 Pancreas, Purified pancreatic islet .m-u 223 to 754 532 to 1       532/533
(99 %)
7 diff
(98.7 %id)
AI366891 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .m-u 370 to 749 380 to 1       380/380
(100 %)
2 diff
(99.5 %id)
AI793211 Kidney .m-u 370 to 893 524 to 1   tiling clone,   524/524
(100 %)
7 diff
(98.7 %id)
AA598924.
matches multiple genes
  .m-u 404 to 752 351 to 1     also hits gene spuskerby 351/351
(100 %)
12 diff
(96.6 %id)
GD146747   .m-u 488 to 757 1 to 270   tiling clone,   270/270
(100 %)
6 diff
(97.8 %id)
AI261223 Kidney .m-u 534 to 893 360 to 1   tiling clone,   360/360
(100 %)
6 diff
(98.4 %id)
BP366381 thymus .n 1 to 580 1 to 580   tiling clone,   580/580
(100 %)
0 diff
(100 %id)
DA440370 tongue, tumor tissue .n 85 to 608 2 to 525 H52X tiling clone, capped   524/524
(100 %)
0 diff
(100 %id)
AK054773 cerebellum .o-u 1 to 1810 2 to 1811 exact tiling clone, available from FLJ,   1811/1811
(100 %)
2 diff
(99.9 %id)
DA055547 cerebellum .o-u 1 to 543 2 to 544   capped   543/543
(100 %)
2 diff
(99.7 %id)
CK003033 brain/CNS, Human Brain - Cerebellar Cortex .o-u 969 to 1551 1 to 584       584/660
(88 %)
15 diff
(97.8 %id)
TI_154046788   .o-u 1016 to 1810 873 to 90   AAA   784/940
(83 %)
16 diff
(98.3 %id)
DB296543 cerebellum .o-u 1256 to 1810 555 to 1       555/555
(100 %)
1 diff
(99.9 %id)
AI379492 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .o-u 1334 to 1811 479 to 2       478/479
(99 %)
0 diff
(100 %id)
DB331556 small intestine .o-u 1354 to 1865 1 to 502   tiling clone, Submitted on the opposite strand 502/502
(100 %)
23 diff
(95.5 %id)
AW295377   .o-u 1362 to 1810 466 to 18   AAA   449/459
(97 %)
2 diff
(99.6 %id)
AW264879 lung, two pooled squamous cell carcinomas .o-u 1448 to 1810 373 to 11   AAA   363/363
(100 %)
0 diff
(100 %id)
CD106121 brain, Pituitary .o-u 1464 to 1812 10 to 356       347/392
(88 %)
5 diff
(98.8 %id)
DB291800 uterus .p-u 1 to 596 2 to 597 exact tiling clone, capped   596/596
(100 %)
0 diff
(100 %id)
AK075526 whole embryo, mainly head Gene RNF40, variant not shown         Suspected internal deletion, this clone was ignored    
AK131310 brain Gene RNF40, variant not shown       available from FLJ, Suspected internal deletion, suspected internal deletion, this clone was ignored    
AK293710 cerebellum Gene RNF40, variant not shown         This clone was ignored    
AK294258 amygdala Gene RNF40, variant not shown         This clone was ignored    
AK304521 uterus Gene RNF40, variant not shown         Suspected internal deletion, this clone was ignored    
DC306197 cerebellum Gene RNF40, variant not shown         This clone was ignored    
DC314325 amygdala Gene RNF40, variant not shown         This clone was ignored    
DC315217 amygdala Gene RNF40, variant not shown         This clone was ignored    
DA232943 brain Gene RNF40, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB307055 caudate nucleus Gene RNF40, variant not shown              
DA272467 caudate nucleus Gene RNF40, variant not shown       capped      
BX640763 rectum tumor Gene RNF40, variant not shown       available from DKFZ, AAA Suspected internal deletion, this clone was ignored    
DC351541 brain Gene RNF40, variant not shown         This clone was ignored    
BQ881436 dorsal root ganglia Gene RNF40, variant not shown              
TI_154123545   Gene RNF40, variant not shown       AAA Suspected internal deletion, this clone was ignored    
DB216217 trachea Gene RNF40, variant not shown       capped This clone was ignored    
TI_151746664   Gene RNF40, variant not shown         This clone was ignored    
DC420062 uterus Gene RNF40, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m-u, .n, .o-u, .p-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI