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Gene TRIM54TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
59 supporting clones for gene TRIM54 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_032546.3   .a 1 to 2058 2 to 2059 exact RefSeq, AAA   2059/2059
(100 %)
0 diff
(100 %id)
AJ291714   .a 303 to 1631 1 to 1329 N256T tiling clone,   1329/1329
(100 %)
1 diff
(100.0 %id)
NM_187841.2   .b 1 to 1932 2 to 1933 exact RefSeq, AAA   1933/1933
(100 %)
0 diff
(100 %id)
DA897493 skeletal muscle .b 1 to 553 3 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA897004 skeletal muscle .b 1 to 553 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
DA897011 skeletal muscle .b 1 to 569 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
DA899614 skeletal muscle .b 29 to 553 2 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
BM726338 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 33 to 690 1 to 658       658/658
(100 %)
0 diff
(100 %id)
DA900663 skeletal muscle .b 190 to 748 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
BC141807 Donated clones,Novartis FGA collection .b 228 to 1928 1 to 1701 exact tiling clone, AAA   1701/1701
(100 %)
0 diff
(100 %id)
TI_1971558347   .b 319 to 1136 824 to 8       817/1234
(66 %)
0 diff
(100 %id)
TI_1971559553   .b 319 to 910 136 to 727     Submitted on the opposite strand 592/727
(81 %)
6 diff
(99.2 %id)
TI_1607547577   .b 319 to 749 131 to 561     Submitted on the opposite strand 431/561
(76 %)
6 diff
(99.0 %id)
BF855618 prostate_normal .b 380 to 906 555 to 28     Submitted on the opposite strand 528/555
(95 %)
5 diff
(99.1 %id)
BF855619 prostate_normal .b 380 to 887 512 to 2     Submitted on the opposite strand 511/512
(99 %)
5 diff
(99.1 %id)
TI_1971558033   .b 693 to 1734 1103 to 58     Submitted on the opposite strand 1046/1318
(79 %)
17 diff
(98.8 %id)
TI_1971554001   .b 867 to 1140 278 to 4       275/278
(98 %)
0 diff
(100 %id)
F26252 pectoral muscle (after mastectomy) .b 1086 to 1225 1 to 140       140/140
(100 %)
0 diff
(100 %id)
AA447961   .b 1089 to 1506 420 to 1       418/420
(99 %)
3 diff
(99.3 %id)
AJ403135 colon, larynx carcinoma .b 1160 to 1429 1 to 270       270/270
(100 %)
1 diff
(99.7 %id)
BM680943 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1439 to 1928 508 to 19   AAA   490/490
(100 %)
0 diff
(100 %id)
AA808889 germinal center B-cells, tonsil .c-u 1 to 551 553 to 3 A54Q P56Q G57V A59Q M60C ... tiling clone,   551/553
(99 %)
0 diff
(100 %id)
BF826027 head_normal .d 1 to 125 6 to 130   tiling clone,   125/130
(96 %)
6 diff
(95.4 %id)
BF827080 head_normal .d 1 to 478 13 to 494   tiling clone,   482/494
(97 %)
17 diff
(96.6 %id)
BF828780 head_normal .d 1 to 562 33 to 593 A57X Q73P Y74V G75W D76R ...     561/593
(94 %)
11 diff
(98.2 %id)
BF828593 head_normal .d 5 to 540 16 to 550   tiling clone,   535/550
(97 %)
9 diff
(98.4 %id)
BF828712 head_normal .d 6 to 302 17 to 311       295/311
(94 %)
6 diff
(98.1 %id)
BF828692 head_normal .d 9 to 550 19 to 559       541/559
(96 %)
11 diff
(98.1 %id)
BF829678 head_normal .d 11 to 560 27 to 581   tiling clone,   555/581
(95 %)
7 diff
(98.8 %id)
BQ359221 head_normal .d 52 to 429 21 to 388       368/388
(94 %)
12 diff
(97.0 %id)
C03660 heart .e 1 to 114 1 to 114   tiling clone,   114/114
(100 %)
1 diff
(99.2 %id)
CR738663   .e 103 to 807 1 to 705   tiling clone,   705/705
(100 %)
2 diff
(99.8 %id)
AA428229.
matches multiple genes
  .e 349 to 823 1 to 475 exact tiling clone, Suspected internal deletion, this clone was ignored, also hits gene INTS9 475/475
(100 %)
2 diff
(99.6 %id)
AA182748 muscle, skeletal muscle .f 1 to 354 354 to 1 P81L tiling clone,   354/354
(100 %)
5 diff
(98.6 %id)
AJ573393 pectoral muscle (after mastectomy) .f 36 to 342 16 to 322       307/322
(95 %)
6 diff
(98.2 %id)
BU633919 cell lines, Chondrosarcoma .f 36 to 799 779 to 19   tiling clone, AAA   761/770
(98 %)
3 diff
(99.7 %id)
TI_154127552   .f 72 to 795 805 to 87   AAA   719/931
(77 %)
5 diff
(99.5 %id)
CA417215 Chondrosarcoma Cell line .f 72 to 795 737 to 19   AAA   719/770
(93 %)
5 diff
(99.4 %id)
AA868267   .f 126 to 375 264 to 15   AAA   250/250
(100 %)
2 diff
(99.2 %id)
CA423735 cell lines, Chondrosarcoma .f 154 to 799 660 to 15   AAA   646/646
(100 %)
6 diff
(99.1 %id)
CA423690 cell lines, Chondrosarcoma .f 269 to 795 545 to 19   AAA   527/527
(100 %)
1 diff
(99.9 %id)
AW241837 pooled .f 328 to 796 472 to 3       470/472
(99 %)
0 diff
(100 %id)
AJ574408 pectoral muscle (after mastectomy) .f 362 to 599 2 to 239       238/239
(99 %)
6 diff
(97.5 %id)
AI262941 Kidney .f 369 to 800 438 to 7       432/438
(98 %)
0 diff
(100 %id)
F23238 pectoral muscle (after mastectomy) .f 370 to 707 1 to 337       337/337
(100 %)
2 diff
(99.5 %id)
F34480 pectoral muscle (after mastectomy) .f 376 to 532 1 to 156       156/156
(100 %)
5 diff
(96.8 %id)
AI005475 pooled .f 421 to 796 379 to 4       376/379
(99 %)
0 diff
(100 %id)
AA625641   .f 425 to 796 373 to 3       371/373
(99 %)
0 diff
(100 %id)
AI420561 Prostate .f 467 to 796 338 to 8       331/338
(97 %)
0 diff
(100 %id)
BF058468 fibrotheoma, ovary .f 516 to 995 480 to 1   tiling clone,   480/480
(100 %)
0 diff
(100 %id)
AA621257   .f 554 to 798 246 to 3       244/246
(99 %)
0 diff
(100 %id)
F34295 pectoral muscle (after mastectomy) .f 554 to 684 1 to 130       130/130
(100 %)
5 diff
(96.2 %id)
AW294748   .f 583 to 1022 439 to 1   tiling clone,   439/439
(100 %)
3 diff
(99.4 %id)
BF941825 fibrotheoma, ovary .f 640 to 995 356 to 1       356/356
(100 %)
1 diff
(99.8 %id)
AI971801 fibrotheoma, ovary .f 745 to 995 251 to 1       251/251
(100 %)
0 diff
(100 %id)
AI352333 pooled germ cell tumors .f 777 to 995 219 to 1       219/219
(100 %)
0 diff
(100 %id)
AI631150 pooled germ cell tumors .f 777 to 995 219 to 1       219/219
(100 %)
0 diff
(100 %id)
DA899187 skeletal muscle Gene TRIM54, variant not shown       capped This clone was ignored    
AK300699 skeletal muscle Gene TRIM54, variant not shown         Suspected internal deletion, this clone was ignored    
AK311516 skeletal muscle Gene TRIM54, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI