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Gene RNF150TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
62 supporting clones for gene RNF150 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_020724.1   .a 1 to 4661 1 to 4661 exact RefSeq,   4661/4661
(100 %)
0 diff
(100 %id)
DR000778 fetal brain .a 406 to 1080 1 to 675   tiling clone,   675/675
(100 %)
6 diff
(99.2 %id)
CN357427 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 621 to 932 1 to 312       312/312
(100 %)
1 diff
(99.7 %id)
DR002008 fetal brain .a 741 to 1426 1 to 686       686/686
(100 %)
5 diff
(99.3 %id)
CN357426 embryonic stem cells, cell lines H1, H7, andH9 .a 938 to 1608 1 to 671   tiling clone,   671/671
(100 %)
0 diff
(100 %id)
DA865023 placenta .a 1139 to 1583 109 to 553   capped   445/552
(80 %)
6 diff
(99.0 %id)
BX480531   .a 1218 to 1926 1 to 709       709/709
(100 %)
6 diff
(99.2 %id)
AA187891   .a 1233 to 1785 1 to 553       553/554
(99 %)
5 diff
(99.1 %id)
DA187429 amygdala .a 1271 to 1809 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
BX389436 Neuroblastoma Cot 25-normalized .a 1540 to 2444 1 to 899   tiling clone,   899/902
(99 %)
15 diff
(98.4 %id)
AA332816 Embryo, 8 weeks .a 1606 to 1849 1 to 243       243/245
(99 %)
7 diff
(97.2 %id)
DA534127 brain .a 1624 to 2188 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
CA429354 Cell Line, Chondrosarcoma .a 1655 to 2375 736 to 19   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 718/718
(100 %)
4 diff
(99.5 %id)
BM717939 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1743 to 2342 1 to 600   tiling clone,   600/600
(100 %)
0 diff
(100 %id)
DA782853 brain .a 2046 to 2636 2 to 592   capped   591/591
(100 %)
0 diff
(100 %id)
CN357425 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2230 to 2828 1 to 599   tiling clone,   599/599
(100 %)
1 diff
(99.9 %id)
CD702046 normal nasopharynx .a 2273 to 2556 29 to 311       283/311
(90 %)
6 diff
(98.1 %id)
BE294503 muscle, rhabdomyosarcoma .a 2453 to 3029 1 to 576       576/576
(100 %)
1 diff
(99.9 %id)
BE297167 muscle, rhabdomyosarcoma .a 2455 to 3111 1 to 659       659/659
(100 %)
3 diff
(99.6 %id)
BU950002 Pancreas, Purified pancreatic islet .a 2460 to 3108 10 to 658       649/658
(98 %)
6 diff
(99.1 %id)
AA317893 retina .a 2466 to 2898 1 to 436       436/436
(100 %)
3 diff
(99.4 %id)
DA376345 thalamus .a 2577 to 3118 2 to 543   tiling clone, capped   542/542
(100 %)
0 diff
(100 %id)
BM719420 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 2647 to 3038 1 to 391   fully sequenced, Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 391/391
(100 %)
3 diff
(99.3 %id)
BF951317 nervous_normal .a 2827 to 3295 26 to 493       468/493
(94 %)
12 diff
(97.6 %id)
AA569861 breast .a 2827 to 3286 460 to 2       459/460
(99 %)
0 diff
(100 %id)
BM684251 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3008 to 3284 294 to 19   fully sequenced, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 276/276
(100 %)
2 diff
(99.3 %id)
BE781831 eye, retinoblastoma .a 3018 to 3649 1 to 636       636/1072
(59 %)
24 diff
(97.8 %id)
AA602648 adrenal adenoma, adrenal gland .a 3019 to 3390 372 to 1       372/372
(100 %)
0 diff
(100 %id)
BF857658 prostate_tumor .a 3022 to 3362 353 to 13     Submitted on the opposite strand 341/514
(66 %)
0 diff
(100 %id)
CD108848 brain, Pituitary .a 3092 to 3924 1 to 839   tiling clone,   839/844
(99 %)
12 diff
(98.6 %id)
AV721880 hypothalamus .a 3136 to 3756 1 to 613       613/622
(98 %)
7 diff
(98.9 %id)
AA187892   .a 4080 to 4629 549 to 1   tiling clone,   549/551
(99 %)
10 diff
(98.2 %id)
AB033040 brain .b 1 to 4535 1 to 5111   tiling clone, available from KIAA,   4365/5111
(85 %)
0 diff
(100 %id)
BC101992 PCR rescued clones .c 1 to 995 1 to 995 exact tiling clone,   995/995
(100 %)
0 diff
(100 %id)
BF508800   .c 577 to 1003 444 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 427/428
(99 %)
5 diff
(98.9 %id)
AK130520 salivary gland .d 1 to 3589 85 to 3673 exact tiling clone, available from FLJ,   3589/3673
(97 %)
6 diff
(99.9 %id)
DA568163 whole embryo, mainly head .d 2256 to 2990 2 to 739   capped   738/738
(100 %)
6 diff
(99.2 %id)
W24988 lung .d 2263 to 2667 1 to 407       407/407
(100 %)
2 diff
(99.6 %id)
DA571042 whole embryo, mainly head .d 2297 to 3165 2 to 881   fully sequenced, capped   880/880
(100 %)
25 diff
(97.2 %id)
AA487001 lung .d 2299 to 2618 1 to 315       315/315
(100 %)
7 diff
(97.8 %id)
BM705256 eye, RPE and Choroid .d 2458 to 2922 1 to 465       465/465
(100 %)
1 diff
(99.8 %id)
TI_151713360   .d 2710 to 3589 982 to 107   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 876/1000
(87 %)
51 diff
(94.9 %id)
BX350980 Neuroblastoma Cot 25-normalized .d 2713 to 3553 850 to 7       844/850
(99 %)
0 diff
(100 %id)
BF032423 adenocarcinoma, ovary .d 2794 to 3490 1 to 728       728/729
(99 %)
66 diff
(91.0 %id)
BI492329 cochlea, ear .d 2931 to 3618 689 to 3   tiling clone,   687/689
(99 %)
0 diff
(100 %id)
BU949713 Pancreas, Purified pancreatic islet .d 3019 to 3589 569 to 1       569/569
(100 %)
1 diff
(99.9 %id)
CK902756 Pancreas, Purified pancreatic islet .d 3048 to 3557 508 to 1     Submitted on the opposite strand 508/508
(100 %)
7 diff
(98.7 %id)
BU731042 eye, RPE and Choroid .d 3051 to 3590 7 to 546   AAA Submitted on the opposite strand 540/547
(98 %)
4 diff
(99.3 %id)
AA426138 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 3063 to 3260 1 to 197   fully sequenced,   197/197
(100 %)
1 diff
(99.5 %id)
AA426199 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 3063 to 3425 1 to 363   fully sequenced,   363/363
(100 %)
2 diff
(99.5 %id)
AA722069 pineal gland .d 3084 to 3588 495 to 1       495/495
(100 %)
10 diff
(98.0 %id)
TI_151750104   .d 3107 to 3606 595 to 92       504/1167
(43 %)
0 diff
(100 %id)
AI123583 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 3108 to 3601 494 to 1       494/494
(100 %)
4 diff
(99.2 %id)
N22353 cochlea, ear .d 3118 to 3572 458 to 1       458/458
(100 %)
7 diff
(98.5 %id)
DB357862 whole embryo, mainly head .d 3135 to 3587 446 to 1   fully sequenced,   446/446
(100 %)
6 diff
(98.7 %id)
BM694637 eye, RPE and Choroid .d 3147 to 3606 465 to 6   tiling clone, Submitted on the opposite strand 460/465
(98 %)
0 diff
(100 %id)
AW295292   .d 3184 to 3606 423 to 1       423/423
(100 %)
0 diff
(100 %id)
N95496 lung .d 3188 to 3598 406 to 1       406/406
(100 %)
4 diff
(99.1 %id)
AW028600 fibrotheoma, ovary .d 3203 to 3594 393 to 1       393/393
(100 %)
1 diff
(99.8 %id)
AI125900   .d 3213 to 3597 385 to 1       385/385
(100 %)
0 diff
(100 %id)
AA424918 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 3230 to 3589 360 to 1   fully sequenced,   360/360
(100 %)
0 diff
(100 %id)
AA682416 liver and spleen .d 3271 to 3589 341 to 23   AAA Possibly primed on the genome, locally A rich (28/29 A in genome downstream of last aligned base) 319/319
(100 %)
1 diff
(99.7 %id)
F15778 pectoral muscle (after mastectomy) .d 3333 to 3590 1 to 259       259/259
(100 %)
2 diff
(99.3 %id)
AA424754 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 3395 to 3590 196 to 1   fully sequenced,   196/196
(100 %)
0 diff
(100 %id)
BG205334   .e 1 to 744 39 to 769 L31S Q32H L154S K155* tiling clone,   731/890
(82 %)
33 diff
(96.3 %id)
BG203270   .e 2 to 486 1 to 485   tiling clone,   485/817
(59 %)
3 diff
(99.7 %id)
BG212647   .f 1 to 647 662 to 14 I2N E4L P5A G7R I10D ... tiling clone, Submitted on the opposite strand 649/680
(95 %)
20 diff
(97.1 %id)
AW295628   Gene RNF150, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C