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Gene RLBP1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
102 supporting clones for gene RLBP1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BM707730 eye, RPE and Choroid .a 1 to 294 1 to 294   tiling clone,   294/294
(100 %)
0 diff
(100 %id)
BU733252 eye, RPE and Choroid .a 1097 to 1540 462 to 19   tiling clone, AAA   444/447
(99 %)
2 diff
(99.6 %id)
BU155511 melanotic melanoma, skin .b -11 to 806 13 to 830   tiling clone,   818/888
(92 %)
19 diff
(97.9 %id)
BM705175 eye, RPE and Choroid .b 55 to 594 1 to 540   tiling clone,   540/540
(100 %)
2 diff
(99.7 %id)
BU734445 eye, RPE and Choroid .b 1229 to 1593 383 to 19   tiling clone, AAA   365/365
(100 %)
2 diff
(99.5 %id)
DQ980611 retina .c 1 to 309 1 to 309   tiling clone,   309/309
(100 %)
0 diff
(100 %id)
DA089849 cerebellum .c 56 to 620 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA130778 alzheimer cortex .c 67 to 604 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
BX490622   .c 82 to 564 1 to 483       483/483
(100 %)
4 diff
(99.2 %id)
NM_000326.4   .c 83 to 1834 1 to 1752 exact RefSeq,   1752/1752
(100 %)
0 diff
(100 %id)
DA210261 brain .c 87 to 662 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
BI666716 brain, hypothalamus .c 89 to 809 1 to 727       727/737
(98 %)
24 diff
(96.8 %id)
TI_44343168   .c 94 to 809 130 to 851       722/861
(83 %)
26 diff
(97.0 %id)
BE896018 melanotic melanoma, skin .c 136 to 907 1 to 765       765/1030
(74 %)
26 diff
(97.5 %id)
BQ428208 melanotic melanoma, skin .c 175 to 987 1 to 814       814/868
(93 %)
4 diff
(99.6 %id)
BC004199 Uterus, endometrium adenocarcinoma .c 181 to 1831 1 to 1651 exact tiling clone, available from MGC, AAA   1651/1651
(100 %)
2 diff
(99.9 %id)
BY798168 eye .c 183 to 778 1 to 596       596/596
(100 %)
3 diff
(99.5 %id)
AK312457 caudate nucleus .c 195 to 1416 1 to 1222 exact     1222/1222
(100 %)
0 diff
(100 %id)
DA272991 caudate nucleus .c 196 to 760 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
BE387922 endometrium, adenocarcinoma cell line, uterus .c 200 to 699 1 to 500       500/500
(100 %)
0 diff
(100 %id)
BF692549 melanotic melanoma, high MDR, skin .c 204 to 795 1 to 594       594/925
(64 %)
36 diff
(96.2 %id)
BM685451 eye, RPE and Choroid .c 206 to 674 1 to 469       469/469
(100 %)
5 diff
(99.0 %id)
BG476252 melanotic melanoma, skin .c 207 to 982 1 to 795       694/904
(76 %)
28 diff
(97.0 %id)
CA395738 eye, RPE/choroid .c 213 to 544 1 to 332       332/332
(100 %)
4 diff
(98.8 %id)
AV749493 Pituitary .c 218 to 636 1 to 413       413/414
(99 %)
10 diff
(97.6 %id)
BG761103 melanotic melanoma, high MDR (cell line), skin .c 220 to 1040 1 to 850       699/850
(82 %)
35 diff
(95.9 %id)
BG763547 melanotic melanoma, high MDR (cell line), skin .c 220 to 1148 1 to 932       930/955
(97 %)
27 diff
(97.2 %id)
BG764209 melanotic melanoma, high MDR (cell line), skin .c 220 to 1097 1 to 888       888/1076
(82 %)
27 diff
(97.5 %id)
BM707806 eye, RPE and Choroid .c 221 to 672 1 to 452       452/452
(100 %)
0 diff
(100 %id)
CA398005 eye, RPE/choroid .c 224 to 836 1 to 613       613/613
(100 %)
0 diff
(100 %id)
J04213   .c 280 to 1596 1 to 1317 exact     1317/1317
(100 %)
2 diff
(99.9 %id)
BM693922 eye, RPE and Choroid .c 299 to 898 1 to 600       600/600
(100 %)
2 diff
(99.7 %id)
BM704782 eye, RPE and Choroid .c 299 to 909 1 to 611       611/611
(100 %)
2 diff
(99.7 %id)
EL951603 eyeball .c 363 to 826 13 to 476       463/476
(97 %)
9 diff
(98.2 %id)
BM698791 eye, fetal eyes .c 409 to 848 1 to 439       439/439
(100 %)
13 diff
(97.1 %id)
BQ221865 melanotic melanoma, skin .c 445 to 1258 12 to 830       819/929
(88 %)
26 diff
(97.3 %id)
W28826 eye, retina .c 449 to 934 505 to 22       484/803
(60 %)
5 diff
(99.4 %id)
TI_1948085532   .c 462 to 1259 129 to 932       804/1379
(58 %)
28 diff
(98.0 %id)
CV026184 mixed .c 463 to 1101 1 to 639       639/639
(100 %)
2 diff
(99.7 %id)
TI_1948085365   .c 466 to 1238 129 to 911       783/1408
(55 %)
27 diff
(98.1 %id)
TI_1948085443   .c 466 to 1147 130 to 811       682/1393
(48 %)
52 diff
(96.3 %id)
BG763831 melanotic melanoma, high MDR (cell line), skin .c 553 to 1382 1 to 835       835/841
(99 %)
11 diff
(98.7 %id)
BU189560 melanotic melanoma, skin .c 561 to 1456 1 to 897       897/897
(100 %)
9 diff
(99.0 %id)
CA391503 eye, RPE/choroid .c 575 to 1233 1 to 659       659/659
(100 %)
1 diff
(99.9 %id)
BM717879 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 583 to 1151 1 to 569   fully sequenced,   569/569
(100 %)
1 diff
(99.9 %id)
BQ640629 eye, retina .c 666 to 1182 1 to 515       513/515
(99 %)
5 diff
(99.1 %id)
EL947174 eyeball .c 752 to 897 16 to 162       147/162
(90 %)
7 diff
(95.7 %id)
W22918 eye, retina .c 821 to 1308 2 to 491       490/727
(67 %)
44 diff
(94.0 %id)
W22884 eye, retina .c 827 to 1311 8 to 489       482/716
(67 %)
13 diff
(98.2 %id)
BM708212 eye, RPE and Choroid .c 895 to 1288 1 to 393   fully sequenced,   393/393
(100 %)
2 diff
(99.5 %id)
BU730346 eye, RPE and Choroid .c 909 to 1613 723 to 19   AAA   705/705
(100 %)
1 diff
(99.9 %id)
BI480785 Native Retinal Pigment Epithelium sheets, retina .c 914 to 1375 4 to 478       486/478
(101 %)
59 diff
(87.7 %id)
BE275439 melanotic melanoma, skin .c 914 to 1549 1 to 634       634/635
(99 %)
3 diff
(99.6 %id)
BG182729   .c 981 to 1297 80 to 396       320/396
(80 %)
11 diff
(97.3 %id)
BG214999   .c 981 to 1753 33 to 805       776/805
(96 %)
27 diff
(96.7 %id)
BG195210   .c 988 to 1734 1 to 746       746/746
(100 %)
13 diff
(98.3 %id)
BG197235   .c 988 to 1764 1 to 774       774/783
(98 %)
24 diff
(97.0 %id)
BG205561   .c 988 to 1811 1 to 816       816/894
(91 %)
28 diff
(96.9 %id)
BG206589   .c 988 to 1756 1 to 763       763/775
(98 %)
31 diff
(96.0 %id)
BG207594   .c 988 to 1802 1 to 805       805/807
(99 %)
25 diff
(97.0 %id)
BG208137   .c 988 to 1769 1 to 776       776/780
(99 %)
43 diff
(94.5 %id)
BG211264   .c 988 to 1689 1 to 695       695/782
(88 %)
36 diff
(95.4 %id)
BG218691   .c 988 to 1807 1 to 803       803/811
(99 %)
25 diff
(97.0 %id)
BG220176   .c 988 to 1815 1 to 814       814/821
(99 %)
31 diff
(96.3 %id)
BM685691 eye, RPE and Choroid .c 988 to 1505 1 to 518   fully sequenced,   518/518
(100 %)
6 diff
(98.9 %id)
BM685343 eye, RPE and Choroid .c 992 to 1496 8 to 511   fully sequenced,   504/511
(98 %)
6 diff
(98.9 %id)
BX096745   .c 1025 to 1826 1 to 805   AAA   805/805
(100 %)
7 diff
(99.2 %id)
CA388623 eye, RPE/choroid .c 1025 to 1479 1 to 455       455/455
(100 %)
0 diff
(100 %id)
EL953098 eyeball .c 1026 to 1656 8 to 639       632/639
(98 %)
9 diff
(98.6 %id)
BM686722 eye, optic nerve .c 1029 to 1666 5 to 645       641/645
(99 %)
10 diff
(98.5 %id)
EL952611 eyeball .c 1047 to 1456 1 to 413       413/413
(100 %)
9 diff
(97.9 %id)
BM704704 eye, RPE and Choroid .c 1076 to 1610 1 to 535   tiling clone,   535/535
(100 %)
1 diff
(99.9 %id)
CA395970 eye, RPE/choroid .c 1077 to 1619 1 to 543       543/543
(100 %)
1 diff
(99.9 %id)
BU742095 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 1122 to 1826 722 to 19   fully sequenced, AAA   704/704
(100 %)
4 diff
(99.5 %id)
BG207595   .c 1145 to 1827 1 to 681       681/715
(95 %)
27 diff
(96.3 %id)
BF940774.
matches multiple genes
brain, glioblastoma (pooled), pooled .c 1177 to 1819 642 to 1     Possibly primed on the genome, locally A rich (13/14 A in genome downstream of last aligned base), also hits gene romomo, yumomo 642/642
(100 %)
5 diff
(99.3 %id)
TI_151713301   .c 1185 to 1618 554 to 117       438/1250
(35 %)
4 diff
(99.7 %id)
TI_151745092   .c 1211 to 1816 681 to 77       605/1065
(56 %)
4 diff
(99.7 %id)
BU732053 eye, RPE and Choroid .c 1227 to 1826 618 to 19   fully sequenced, AAA   600/600
(100 %)
3 diff
(99.5 %id)
T27894 eye .c 1229 to 1564 1 to 337       337/337
(100 %)
1 diff
(99.8 %id)
BM694859 eye, RPE and Choroid .c 1248 to 1799 1 to 552   fully sequenced,   552/552
(100 %)
1 diff
(99.9 %id)
BM662990 eye, RPE and Choroid .c 1256 to 1826 584 to 18   AAA   567/575
(98 %)
6 diff
(99.0 %id)
TI_151715176   .c 1258 to 1822 748 to 183       566/770
(73 %)
0 diff
(100 %id)
AA992102   .c 1279 to 1827 544 to 5       540/544
(99 %)
0 diff
(100 %id)
AA317192 retina .c 1283 to 1509 1 to 230       230/230
(100 %)
3 diff
(98.7 %id)
BE349146 malignant melanoma, metastatic to lymphnode, skin .c 1320 to 1827 509 to 2       508/509
(99 %)
0 diff
(100 %id)
EL951868 eyeball .c 1378 to 1827 20 to 470       451/470
(95 %)
7 diff
(98.6 %id)
CA398004 eye, RPE/choroid .c 1379 to 1831 481 to 29   AAA   453/453
(100 %)
6 diff
(98.7 %id)
M78192   .c 1431 to 1807 380 to 1       380/380
(100 %)
4 diff
(99.0 %id)
M78194   .c 1431 to 1807 380 to 1       380/381
(99 %)
4 diff
(99.0 %id)
BU942922 mixed (pool of 40 RNAs) .c 1438 to 1799 1 to 362   AAA   362/362
(100 %)
3 diff
(99.2 %id)
EL946577 eyeball .c 1460 to 1832 1 to 371   tiling clone,   371/395
(93 %)
5 diff
(98.8 %id)
BM663177 eye, RPE and Choroid .c 1466 to 1826 378 to 18   fully sequenced, AAA   361/361
(100 %)
1 diff
(99.8 %id)
BM663145 eye, RPE and Choroid .c 1475 to 1836 362 to 1   fully sequenced,   362/362
(100 %)
6 diff
(98.4 %id)
BU733299 eye, RPE and Choroid .c 1497 to 1826 348 to 19   AAA   330/330
(100 %)
2 diff
(99.4 %id)
BU731664 eye, RPE and Choroid .c 1552 to 1826 294 to 19   fully sequenced, AAA   276/276
(100 %)
2 diff
(99.3 %id)
BG108664 retina, Retinal Pigment Epithelium sheets .c 1657 to 1812 1 to 155       155/155
(100 %)
5 diff
(96.8 %id)
BG209219   .c 1659 to 1817 195 to 38     Submitted on the opposite strand 158/195
(81 %)
0 diff
(100 %id)
BM690548 eye, RPE and Choroid .c 1661 to 1826 15 to 180   fully sequenced, AAA   166/180
(92 %)
0 diff
(100 %id)
BU726061 eye, RPE and Choroid .c 1704 to 1826 140 to 18   fully sequenced, AAA   123/123
(100 %)
0 diff
(100 %id)
BM727522 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 1 to 150 1 to 150   tiling clone, fully sequenced,   150/150
(100 %)
0 diff
(100 %id)
BU740756 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 120 to 607 506 to 19   tiling clone, fully sequenced, AAA   488/488
(100 %)
1 diff
(99.8 %id)
AL711467 human skeletal muscle .e 1 to 369 1 to 369 exact tiling clone,   369/369
(100 %)
0 diff
(100 %id)
BX490605   .e 158 to 629 1 to 472       472/472
(100 %)
6 diff
(98.8 %id)
BE409404 choriocarcinoma, placenta .e 171 to 841 1 to 670   tiling clone,   670/672
(99 %)
3 diff
(99.6 %id)
BE277154 melanotic melanoma, skin .e 173 to 969 1 to 786   tiling clone,   786/819
(95 %)
25 diff
(97.0 %id)
BE391005 endometrium, adenocarcinoma cell line, uterus .e 177 to 668 10 to 501       492/501
(98 %)
6 diff
(98.9 %id)
DB047073 testis .f 1 to 543 12 to 554 exact tiling clone, capped   543/543
(100 %)
0 diff
(100 %id)
CA397976 eye, RPE/choroid Gene RLBP1, variant not shown       AAA This clone was ignored    
CA397977 eye, RPE/choroid Gene RLBP1, variant not shown         This clone was ignored    
BQ638358 eye, retina Gene RLBP1, variant not shown         Suspected internal deletion, this clone was ignored    
BQ639926 eye, retina Gene RLBP1, variant not shown         Suspected internal deletion, this clone was ignored    
BQ640131 eye, retina Gene RLBP1, variant not shown         Suspected internal deletion, this clone was ignored    
BM921294 pooled brain, lung, testis Gene RLBP1, variant not shown         This clone was ignored    
BU193650 melanotic melanoma, skin Gene RLBP1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI