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Gene RIPK1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
259 supporting clones for gene RIPK1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CR989261 T-Lymphocytes .a 1 to 801 1 to 804   tiling clone,   802/804
(99 %)
5 diff
(99.4 %id)
DA722943   .a 145 to 703 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
BX458899.
matches multiple genes
placenta .a 156 to 1108 1 to 957     also hits gene SLC12A3 957/961
(99 %)
29 diff
(97.0 %id)
BC126254 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 273 to 3543 1 to 3271   tiling clone,   3271/3271
(100 %)
1 diff
(100.0 %id)
BC126256 Pooled, cerebellum, kidney, placenta,testis, lung, colon, liver, heart, thyroid, bladder,uterus, PCR rescued clones .a 273 to 3543 1 to 3271       3271/3271
(100 %)
1 diff
(100.0 %id)
NM_003804.3   .a 299 to 4162 1 to 3864   RefSeq,   3864/3864
(100 %)
0 diff
(100 %id)
U50062 umbilical vein endothelium .a 299 to 2915 1 to 2617   tiling clone,   2617/2617
(100 %)
4 diff
(99.9 %id)
AU140586 placenta .a 683 to 1413 2 to 731   capped   730/731
(99 %)
7 diff
(99.1 %id)
AU158578 placenta .a 3615 to 4160 543 to 1   tiling clone,   543/544
(99 %)
8 diff
(98.6 %id)
DC369446   .b 1 to 576 1 to 576   tiling clone,   576/576
(100 %)
4 diff
(99.4 %id)
BP359390 mammary gland .b 22 to 600 1 to 580   tiling clone,   580/580
(100 %)
3 diff
(99.5 %id)
DC298307 adrenal gland .b 26 to 515 1 to 490       490/490
(100 %)
2 diff
(99.6 %id)
DC298350 adrenal gland .b 26 to 567 1 to 542       542/542
(100 %)
2 diff
(99.7 %id)
AK314176 adrenal gland .b 26 to 2273 1 to 2248   tiling clone,   2248/2248
(100 %)
4 diff
(99.9 %id)
DC423119 uterus .b 26 to 578 1 to 553       553/553
(100 %)
2 diff
(99.7 %id)
BP246889 Kidney .b 74 to 657 1 to 582       582/582
(100 %)
7 diff
(98.8 %id)
DA194322 amygdala .b 106 to 688 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
BP202280 amygdala .b 111 to 695 1 to 585       585/585
(100 %)
1 diff
(99.9 %id)
TI_1520875369   .b 232 to 1360 53 to 1172   tiling clone,   1120/1270
(88 %)
29 diff
(97.8 %id)
DN996712 breast cancer, Mammary gland (cancer tissue) .b 233 to 806 1 to 573       573/573
(100 %)
7 diff
(98.8 %id)
DB279106 uterus .b 399 to 883 2 to 487   capped   486/486
(100 %)
1 diff
(99.8 %id)
CR618624 Placenta Cot 25-normalized .c 1 to 2592 1 to 2592 exact tiling clone,   2592/2592
(100 %)
0 diff
(100 %id)
AL545479 placenta, Placenta Cot 25-normalized .c 1 to 1115 1 to 1104       1104/1137
(97 %)
28 diff
(97.6 %id)
BP235704 coronary artery .c 161 to 742 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BQ962541 epithelioid carcinoma cell line, Pancreas .c 193 to 980 20 to 811       792/931
(85 %)
22 diff
(97.7 %id)
BQ317122 colon .c 237 to 889 654 to 1       654/656
(99 %)
6 diff
(99.1 %id)
DA368678 subthalamic nucleus .c 2411 to 2969 2 to 561   capped   560/560
(100 %)
3 diff
(99.5 %id)
CF142254 CNCAP(3)T-225 cell line, Prostate .c 2419 to 2794 8 to 384       377/384
(98 %)
6 diff
(98.5 %id)
TI_154173207   .c 2419 to 3034 80 to 697       618/627
(98 %)
28 diff
(95.6 %id)
T35715 small intestine .c 2427 to 2677 1 to 254       254/256
(99 %)
5 diff
(98.1 %id)
AW408368 lymph .c 2468 to 3061 8 to 601       594/601
(98 %)
6 diff
(99.1 %id)
TI_154148011   .c 2468 to 3168 85 to 783       699/699
(100 %)
6 diff
(99.2 %id)
TI_1520877309   .c 2472 to 3162 1 to 693   tiling clone,   693/1197
(57 %)
6 diff
(99.5 %id)
TI_1520877317   .c 2483 to 3170 13 to 699       687/1336
(51 %)
7 diff
(99.5 %id)
BM827505 Ascites, stomach .c 2505 to 3019 1 to 515       515/515
(100 %)
1 diff
(99.9 %id)
ES312573 frontal balding hair, skin .c 2535 to 2730 1 to 196       196/196
(100 %)
0 diff
(100 %id)
BQ060050 lymph, lymphoma, cell line .c 2546 to 3188 1 to 647       647/1037
(62 %)
19 diff
(98.2 %id)
BF337190 brain, glioblastoma with EGFR amplification .c 2574 to 3237 1 to 670       670/928
(72 %)
20 diff
(97.9 %id)
BM789776 Ascites, stomach .c 2700 to 3365 1 to 667       667/667
(100 %)
3 diff
(99.6 %id)
CB159978 Liver .c 2711 to 3233 1 to 523       523/523
(100 %)
2 diff
(99.7 %id)
W86640 liver and spleen .c 2718 to 3143 1 to 426       426/428
(99 %)
3 diff
(99.3 %id)
BG741713 skin .c 2765 to 3365 1 to 601   tiling clone,   601/602
(99 %)
2 diff
(99.7 %id)
BX362738   .c 2781 to 3719 937 to 1       937/937
(100 %)
43 diff
(95.5 %id)
TI_149287185   .c 2852 to 3779 989 to 75   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 915/1119
(81 %)
14 diff
(98.8 %id)
BI252084 hepatocellular carcinoma, cell line, Liver .c 2896 to 3253 1 to 354   fully sequenced,   354/354
(100 %)
1 diff
(99.8 %id)
BQ649601 hepatocellular carcinoma, cell line, Liver .c 2901 to 3434 1 to 538       538/1017
(52 %)
22 diff
(97.9 %id)
TI_154122775   .c 2947 to 3779 907 to 79   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 829/980
(84 %)
14 diff
(98.6 %id)
TI_149303709   .c 2949 to 3779 905 to 82   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 824/960
(85 %)
11 diff
(98.9 %id)
BQ684814 ductal carcinoma, cell line, Pancreas .c 2956 to 3781 859 to 26     Submitted on the opposite strand 834/930
(89 %)
0 diff
(100 %id)
BM712292 eye, lens .c 3018 to 3573 1 to 556       556/556
(100 %)
1 diff
(99.9 %id)
TI_151716393   .c 3018 to 3781 905 to 135       771/1186
(65 %)
0 diff
(100 %id)
CB851078 lung, Primary Lung Cystic Fibrosis EpithelialCells .c 3035 to 3779 761 to 17   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 745/745
(100 %)
3 diff
(99.6 %id)
BQ015335 Chondrosarcoma, Left Pubic Bone .c 3046 to 3779 745 to 17   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 729/740
(98 %)
6 diff
(99.2 %id)
BQ006126 Chondrosarcoma, Left Pelvis .c 3052 to 3779 739 to 17   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 723/728
(99 %)
12 diff
(98.4 %id)
AA352372   .c 3061 to 3329 8 to 278       271/278
(97 %)
7 diff
(97.5 %id)
AA352373   .c 3068 to 3380 28 to 340       313/346
(90 %)
2 diff
(99.5 %id)
AW953591   .c 3068 to 3438 29 to 402       374/547
(68 %)
5 diff
(99.1 %id)
BM972544 lung .c 3072 to 3779 725 to 17   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 709/709
(100 %)
3 diff
(99.6 %id)
BM931946 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 3095 to 3722 1 to 628       628/628
(100 %)
1 diff
(99.9 %id)
AW978650   .c 3148 to 3777 632 to 2     Submitted on the opposite strand 631/637
(99 %)
0 diff
(100 %id)
BQ005750 Chondrosarcoma, Left Pubic Bone .c 3157 to 3779 639 to 17   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 623/623
(100 %)
1 diff
(99.9 %id)
CA423826 cell lines, Chondrosarcoma .c 3158 to 3779 638 to 17   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 622/622
(100 %)
2 diff
(99.7 %id)
BI252704 hepatocellular carcinoma, cell line, Liver .c 3223 to 3707 485 to 1   fully sequenced,   485/485
(100 %)
2 diff
(99.6 %id)
AI743085 pooled .c 3237 to 3781 550 to 5       546/550
(99 %)
0 diff
(100 %id)
BU931909 ovary, teratocarcinoma, cell line .c 3239 to 3779 1 to 541   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 541/541
(100 %)
1 diff
(99.9 %id)
H97473 melanocyte .c 3246 to 3779 539 to 1       539/539
(100 %)
8 diff
(98.6 %id)
BQ189626 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .c 3264 to 3785 1 to 522   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 522/522
(100 %)
3 diff
(99.5 %id)
TI_151734538   .c 3264 to 3785 603 to 82   tiling clone, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 522/967
(53 %)
1 diff
(99.9 %id)
BF109123 pooled .c 3266 to 3781 521 to 5       517/521
(99 %)
0 diff
(100 %id)
AI743084 pooled .c 3268 to 3781 518 to 5       514/518
(99 %)
0 diff
(100 %id)
AI123587 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3269 to 3781 518 to 6       513/518
(99 %)
0 diff
(100 %id)
AW081905 esophagus, squamous cell carcinoma .c 3276 to 3779 504 to 1       504/504
(100 %)
1 diff
(99.9 %id)
BP394064 pancreatic islet .c 3282 to 3779 1 to 498     Submitted on the opposite strand 498/498
(100 %)
1 diff
(99.8 %id)
CA308103 Alveolar Macrophage, lung .c 3303 to 3779 494 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 478/478
(100 %)
3 diff
(99.4 %id)
AI678938 Prostate .c 3310 to 3779 470 to 1       470/470
(100 %)
4 diff
(99.2 %id)
AW083521 colon, moderately differentiated adenocarcinoma .c 3310 to 3779 470 to 1       470/470
(100 %)
2 diff
(99.6 %id)
AA894831 Kidney .c 3311 to 3780 470 to 1       470/470
(100 %)
2 diff
(99.6 %id)
AI571027 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .c 3311 to 3781 471 to 1       471/471
(100 %)
1 diff
(99.8 %id)
AI754860 bone marrow stroma .c 3322 to 3779 477 to 20   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 458/458
(100 %)
0 diff
(100 %id)
BF000659 colon, colon tumor, RER+ .c 3322 to 3776 460 to 6       455/460
(98 %)
0 diff
(100 %id)
AI680623 Prostate .c 3342 to 3779 435 to 1       435/435
(100 %)
6 diff
(98.7 %id)
BE301343 Kidney, renal cell adenocarcinoma .c 3343 to 3781 440 to 2       439/440
(99 %)
0 diff
(100 %id)
BE043916 lymph node, lymphoma, follicular mixed small and largecell .c 3350 to 3777 430 to 3       428/430
(99 %)
0 diff
(100 %id)
AI680612 Prostate .c 3353 to 3779 427 to 1       427/427
(100 %)
4 diff
(99.1 %id)
AI420474 Prostate .c 3378 to 3779 402 to 1       402/402
(100 %)
0 diff
(100 %id)
AI971246 Prostate .c 3378 to 3779 402 to 1       402/402
(100 %)
0 diff
(100 %id)
AW206750   .c 3393 to 3779 402 to 16   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 387/403
(96 %)
0 diff
(100 %id)
AI080004 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3395 to 3781 401 to 15       387/401
(96 %)
0 diff
(100 %id)
AI312797 lung .c 3395 to 3780 386 to 1       386/386
(100 %)
0 diff
(100 %id)
AA501530 alveolar rhabdomyosarcoma .c 3398 to 3781 396 to 13       384/396
(96 %)
0 diff
(100 %id)
AW149196 Kidney, renal cell tumor .c 3410 to 3781 380 to 1       380/449
(84 %)
13 diff
(97.2 %id)
AA780118   .c 3413 to 3779 383 to 17   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 367/367
(100 %)
2 diff
(99.5 %id)
AW341067 carcinoid, lung .c 3415 to 3770 1 to 356     Submitted on the opposite strand 356/356
(100 %)
0 diff
(100 %id)
AW300141 Kidney .c 3421 to 3779 359 to 1       359/359
(100 %)
2 diff
(99.5 %id)
AW194784 Kidney .c 3425 to 3781 358 to 3       356/358
(99 %)
0 diff
(100 %id)
AI016425   .c 3433 to 3781 351 to 3       349/351
(99 %)
0 diff
(100 %id)
W86552 liver and spleen .c 3434 to 3777 345 to 1       345/345
(100 %)
1 diff
(99.8 %id)
AI510781 aorta .c 3436 to 3777 342 to 1       342/343
(99 %)
0 diff
(100 %id)
AI538489 B-cell, chronic lymphotic leukemia .c 3439 to 3781 343 to 1       343/343
(100 %)
0 diff
(100 %id)
AI272650 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 3441 to 3781 355 to 15       341/355
(96 %)
0 diff
(100 %id)
AI520889 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 3451 to 3780 330 to 1       330/330
(100 %)
0 diff
(100 %id)
AI087913 parathyroid gland, parathyroid tumor .c 3462 to 3758 297 to 1       297/297
(100 %)
5 diff
(98.4 %id)
AA412113   .c 3471 to 3781 311 to 1       311/311
(100 %)
1 diff
(99.7 %id)
AW083622 colon, moderately differentiated adenocarcinoma .c 3472 to 3774 350 to 48   AAA   303/314
(96 %)
0 diff
(100 %id)
BU751756 placenta .c 3502 to 3779 293 to 16   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 278/278
(100 %)
1 diff
(99.7 %id)
AI418080 Prostate .c 3514 to 3779 266 to 1       266/266
(100 %)
0 diff
(100 %id)
AI174323   .c 3523 to 3780 258 to 1       258/258
(100 %)
0 diff
(100 %id)
AI611751 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .c 3577 to 3780 204 to 1       204/204
(100 %)
0 diff
(100 %id)
AI753749 bone marrow stroma .c 3592 to 3781 214 to 25       190/214
(88 %)
0 diff
(100 %id)
CK430580 eye, lacrimal gland .c 3645 to 3781 1 to 137   AAA   137/262
(52 %)
1 diff
(99.7 %id)
AK304701 uterus .d 1 to 1989 1 to 1989 exact tiling clone,   1989/1989
(100 %)
1 diff
(100.0 %id)
DC422347 uterus .d 1 to 528 1 to 528       528/528
(100 %)
1 diff
(99.9 %id)
AB208926 brain .e 1 to 4281 1 to 4281 exact tiling clone,   4281/4281
(100 %)
4 diff
(100.0 %id)
EH346336   .e 324 to 402 1 to 77       77/79
(97 %)
5 diff
(93.7 %id)
CR995424 T-Lymphocytes .e 933 to 1724 1 to 795       795/797
(99 %)
5 diff
(99.4 %id)
AL521376 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .e 949 to 1825 1 to 877       877/877
(100 %)
0 diff
(100 %id)
TI_1520877325   .e 1024 to 2208 17 to 1199       1183/1285
(92 %)
21 diff
(98.4 %id)
BX436346 thymus .e 1046 to 1942 1 to 896       896/896
(100 %)
2 diff
(99.8 %id)
DA995997 synovial membrane tissue from rheumatioidarthritis .e 1060 to 1519 2 to 461   capped   460/460
(100 %)
0 diff
(100 %id)
BP223832 colon mucosa .e 1108 to 1900 1 to 786       786/786
(100 %)
20 diff
(97.5 %id)
CR984913 T-Lymphocytes .e 1194 to 1791 1 to 599       599/599
(100 %)
1 diff
(99.9 %id)
DA137553 alzheimer cortex .e 1201 to 1760 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
AL704842 human skeletal muscle .e 1202 to 1871 1 to 670       670/672
(99 %)
3 diff
(99.6 %id)
CN348589 embryonic stem cells, cell lines H1, H7, andH9 .e 1212 to 1960 1 to 749       749/749
(100 %)
0 diff
(100 %id)
CN348590 embryonic stem cells, cell lines H1, H7, andH9 .e 1212 to 1694 1 to 483       483/483
(100 %)
7 diff
(98.6 %id)
BP351261   .e 1290 to 1873 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
CF596469 Stomach, adenocarcinoma .e 1298 to 1993 1 to 699       699/734
(95 %)
10 diff
(98.7 %id)
DA127172 cerebellum .e 1302 to 1899 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
U25994   .e 1317 to 2556 1 to 1240       1240/1240
(100 %)
4 diff
(99.7 %id)
CD617580   .e 1323 to 1490 1 to 168       168/182
(92 %)
7 diff
(96.2 %id)
CD617581   .e 1324 to 1490 174 to 9       166/175
(94 %)
4 diff
(97.8 %id)
BI257769 cervical carcinoma cell line, cervix .e 1329 to 2001 8 to 685       678/894
(75 %)
14 diff
(98.5 %id)
BX348785 Placenta Cot 25-normalized .e 1336 to 2314 1 to 993       993/993
(100 %)
30 diff
(97.0 %id)
BX348786 Placenta Cot 25-normalized .e 1337 to 2268 1 to 923       923/923
(100 %)
25 diff
(97.3 %id)
DB208971 trachea .e 1337 to 1879 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
BP251192 hippocampus .e 1347 to 1930 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
CT004158 T-Lymphocytes .e 1368 to 2062 1 to 694       694/696
(99 %)
2 diff
(99.8 %id)
AL039269 breast cancer .e 1373 to 1856 1 to 484       484/484
(100 %)
0 diff
(100 %id)
BF737966 bladder_tumor .e 1417 to 1819 7 to 409       403/409
(98 %)
7 diff
(98.3 %id)
AW890282 nervous_tumor .e 1586 to 2116 563 to 32       532/563
(94 %)
5 diff
(99.2 %id)
BG387238 adenocarcinoma cell line, colon .e 1601 to 2119 1 to 525       525/786
(66 %)
17 diff
(97.9 %id)
CB122066 Liver .e 1603 to 1994 395 to 4     Submitted on the opposite strand 392/395
(99 %)
0 diff
(100 %id)
BG107606 Bone, osteosarcoma, cell line .e 1604 to 2324 1 to 717       717/719
(99 %)
11 diff
(98.5 %id)
BE001662 breast_normal .e 1651 to 2086 1 to 434       434/444
(97 %)
14 diff
(96.9 %id)
BE884263 leiomyosarcoma, uterus .e 1666 to 2422 1 to 761       761/812
(93 %)
25 diff
(97.0 %id)
DA371678 thalamus .e 1699 to 2258 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
TI_1520877331   .e 1727 to 2850 1 to 1119       1119/1232
(90 %)
12 diff
(99.1 %id)
CB120970 Liver .e 1821 to 1994 177 to 4     Submitted on the opposite strand 174/177
(98 %)
0 diff
(100 %id)
BQ647524 hepatocellular carcinoma, cell line, Liver .e 1850 to 2790 7 to 947       941/960
(98 %)
17 diff
(98.3 %id)
DA737435   .e 1867 to 2560 2 to 697   capped   696/696
(100 %)
3 diff
(99.6 %id)
TI_1520871923   .e 1951 to 2632 687 to 4       684/687
(99 %)
1 diff
(99.9 %id)
AL571266 placenta, Placenta Cot 25-normalized .e 1999 to 3094 1094 to 1       1094/1094
(100 %)
6 diff
(99.5 %id)
DA031499   .e 2006 to 2581 2 to 577   capped   576/576
(100 %)
0 diff
(100 %id)
DA965858 stomach .e 2018 to 2570 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
Z45688 brain, total brain .e 2037 to 2264 1 to 228       228/231
(98 %)
1 diff
(99.6 %id)
DA481627   .e 2058 to 2630 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA746772   .e 2059 to 2609 2 to 552   capped   551/551
(100 %)
1 diff
(99.9 %id)
DB203594 trachea .e 2128 to 2699 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
BP220359 colon .e 2152 to 2728 1 to 577       577/577
(100 %)
7 diff
(98.8 %id)
BP220470 colon .e 2168 to 2753 1 to 586       586/586
(100 %)
2 diff
(99.7 %id)
BX477521   .e 2170 to 2584 1 to 415       415/415
(100 %)
2 diff
(99.6 %id)
AL521375 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .e 2176 to 3093 929 to 8       922/929
(99 %)
20 diff
(97.9 %id)
TI_1520877313   .e 2187 to 3292 8 to 1106       1099/1278
(85 %)
20 diff
(98.5 %id)
BE898370 adenocarcinoma cell line, ovary .e 2216 to 2934 1 to 717       717/732
(97 %)
19 diff
(97.5 %id)
BU932729 mixed (pool of 40 RNAs) .e 2237 to 3034 1 to 800       800/802
(99 %)
18 diff
(97.8 %id)
DA039792 bladder .e 2271 to 2835 2 to 570   capped   569/569
(100 %)
4 diff
(99.3 %id)
BP263523 small intestine .e 2285 to 2865 1 to 582       582/582
(100 %)
15 diff
(97.5 %id)
TI_1520871925   .e 2300 to 3187 891 to 2       890/894
(99 %)
0 diff
(100 %id)
TI_44165713   .e 2300 to 3211 91 to 1013       923/1013
(91 %)
6 diff
(99.5 %id)
DA686459   .e 2341 to 2884 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
BY995246   .e 2390 to 3125 10 to 745       736/745
(98 %)
6 diff
(99.2 %id)
DA039701 bladder .e 2407 to 2985 2 to 580   capped   579/580
(99 %)
1 diff
(99.9 %id)
CA425127 cell lines, Chondrosarcoma .e 2417 to 3130 727 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 709/711
(99 %)
5 diff
(99.3 %id)
BU634345 cell lines, Chondrosarcoma .e 2417 to 3125 726 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 708/711
(99 %)
1 diff
(99.9 %id)
CA748651 Alveolar Macrophage, lung .e 2430 to 3126 715 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 697/697
(100 %)
0 diff
(100 %id)
CA430268 cell lines, Chondrosarcoma .e 2442 to 3125 698 to 19   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 680/680
(100 %)
4 diff
(99.5 %id)
BM911350 astrocytoma grade IV, cell line, brain .e 2445 to 2883 9 to 447       439/1343
(32 %)
8 diff
(99.5 %id)
TI_1520875375   .e 2487 to 3664 1237 to 74       1164/1266
(91 %)
0 diff
(100 %id)
BM853507 Ascites, stomach .e 2526 to 2983 1 to 458       458/458
(100 %)
0 diff
(100 %id)
BE167596 head_neck .e 2529 to 3070 1 to 542       542/542
(100 %)
4 diff
(99.3 %id)
BM722050 eye, fetal eye .e 2530 to 3171 1 to 642     Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 642/642
(100 %)
0 diff
(100 %id)
BM722088 eye, fetal eye .e 2530 to 3148 1 to 619     Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 619/619
(100 %)
0 diff
(100 %id)
BF920044 nervous_tumor .e 2541 to 2666 1 to 122       122/127
(96 %)
7 diff
(94.5 %id)
TI_1520871927   .e 2607 to 3524 922 to 7       916/1011
(90 %)
0 diff
(100 %id)
AA150537 Pancreas .e 2663 to 3097 437 to 1       437/438
(99 %)
5 diff
(98.9 %id)
AA150538 Pancreas .e 2671 to 3097 426 to 1       426/426
(100 %)
2 diff
(99.6 %id)
FN071131 breast carcinoma .e 2674 to 2756 1 to 83       83/100
(83 %)
1 diff
(99.0 %id)
BF922786 nervous_tumor .e 2692 to 3167 485 to 10     Submitted on the opposite strand 476/494
(96 %)
0 diff
(100 %id)
BU598269 mixed (pool of 40 RNAs) .e 2695 to 3481 1 to 787       787/787
(100 %)
13 diff
(98.4 %id)
CB159581 Liver .e 2695 to 3223 1 to 529       529/529
(100 %)
0 diff
(100 %id)
AA833722   .e 2752 to 3128 377 to 2       376/377
(99 %)
0 diff
(100 %id)
CB123939 Liver .e 2754 to 3118 1 to 365       365/365
(100 %)
1 diff
(99.8 %id)
TI_1520871909   .e 2765 to 3524 767 to 9       759/767
(98 %)
10 diff
(98.7 %id)
BP335896 coronary artery .e 2780 to 3361 1 to 582       582/582
(100 %)
1 diff
(99.9 %id)
BF375532 stomach .e 2786 to 3352 571 to 2       570/571
(99 %)
0 diff
(100 %id)
AJ420482   .e 2800 to 4281 10 to 1491   tiling clone, AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 1482/1491
(99 %)
6 diff
(99.6 %id)
AA426323 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 2800 to 3232 1 to 433     Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 433/433
(100 %)
3 diff
(99.4 %id)
AW449578   .e 2818 to 3135 335 to 18   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 318/328
(96 %)
0 diff
(100 %id)
AA149948 Pancreas .e 2827 to 3126 303 to 1       303/303
(100 %)
14 diff
(95.4 %id)
Z43667 brain, total brain .e 2839 to 3188 1 to 350       350/350
(100 %)
0 diff
(100 %id)
AI970005 Prostate .e 2851 to 3132 282 to 1       282/282
(100 %)
4 diff
(98.6 %id)
AI970925 Prostate .e 2851 to 3135 286 to 1       286/286
(100 %)
7 diff
(97.6 %id)
BF436924 Prostate .e 2851 to 3135 285 to 1       285/285
(100 %)
0 diff
(100 %id)
BE896360 melanotic melanoma, skin .e 2869 to 2980 569 to 686       618/686
(90 %)
24 diff
(96.6 %id)
DA832780 placenta .e 2899 to 3661 2 to 776   capped   775/777
(99 %)
20 diff
(97.5 %id)
BI545633 brain, hippocampus .e 3142 to 3210 861 to 927       837/928
(90 %)
41 diff
(95.6 %id)
BG167272 hypernephroma, cell line, Kidney .e 3312 to 3387 568 to 647       625/998
(62 %)
41 diff
(95.9 %id)
BM678670 eye, fetal eye .e 3560 to 4281 736 to 17   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 720/720
(100 %)
6 diff
(99.2 %id)
BM678636 eye, fetal eye .e 3633 to 4281 666 to 17   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 650/650
(100 %)
2 diff
(99.7 %id)
DB379145 placenta .e 3825 to 4281 459 to 1       459/562
(81 %)
12 diff
(97.9 %id)
DB370037   .e 3851 to 4281 432 to 1       432/432
(100 %)
1 diff
(99.8 %id)
AA426324 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 3904 to 4281 393 to 17   AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base) 377/386
(97 %)
1 diff
(99.8 %id)
Z39725 brain, total brain .e 3916 to 4261 346 to 1       346/346
(100 %)
0 diff
(100 %id)
F04575 brain, total brain .e 4085 to 4281 197 to 1       197/197
(100 %)
1 diff
(99.5 %id)
CR984883 T-Lymphocytes .f 1 to 733 1 to 734   tiling clone,   734/736
(99 %)
4 diff
(99.5 %id)
DB277582 uterus .f 512 to 1050 2 to 540   tiling clone, capped   539/539
(100 %)
0 diff
(100 %id)
BF086124 placenta_normal .f 688 to 1071 385 to 4       382/385
(99 %)
0 diff
(100 %id)
DA958479 Spleen .f 787 to 1194 2 to 409   tiling clone, capped   408/408
(100 %)
0 diff
(100 %id)
DB148279 thymus .f 865 to 1121 2 to 258   capped   257/257
(100 %)
0 diff
(100 %id)
AI902674 breast .g 1 to 302 302 to 1   tiling clone,   302/320
(94 %)
4 diff
(98.8 %id)
BX101881 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .g 134 to 460 11 to 337     Submitted on the opposite strand 327/367
(89 %)
4 diff
(99.0 %id)
AI801478 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .g 138 to 447 1 to 310     Submitted on the opposite strand 310/310
(100 %)
0 diff
(100 %id)
AW236421 pooled germ cell tumors .g 138 to 562 1 to 425   tiling clone, Submitted on the opposite strand 425/425
(100 %)
0 diff
(100 %id)
BF055235 pooled .g 472 to 1161 690 to 1   tiling clone,   690/693
(99 %)
19 diff
(97.3 %id)
BP228763 brain .h 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
0 diff
(100 %id)
AI572825 Kidney .i-u 1 to 458 1 to 458   tiling clone, Submitted on the opposite strand 458/458
(100 %)
2 diff
(99.6 %id)
BX281303   .i-u 24 to 460 1 to 436   tiling clone,   436/436
(100 %)
2 diff
(99.6 %id)
BF514067   .i-u 421 to 850 430 to 1   tiling clone,   430/430
(100 %)
2 diff
(99.6 %id)
CT003439 T-Lymphocytes .i-u 421 to 734 314 to 1   tiling clone, Submitted on the opposite strand 314/315
(99 %)
0 diff
(100 %id)
AI333495 lung .i-u 441 to 809 369 to 1       369/369
(100 %)
1 diff
(99.8 %id)
BP250457 hippocampus .j 1 to 588 1 to 587 S16A E21D Q22L P23S P36A ... tiling clone,   587/587
(100 %)
9 diff
(98.5 %id)
DA337293 hippocampus .k 1 to 578 2 to 580   tiling clone, capped   579/579
(100 %)
2 diff
(99.7 %id)
BQ355178 head_neck .k 79 to 653 1 to 572   tiling clone,   572/574
(99 %)
46 diff
(92.0 %id)
DA236181 brain .k 205 to 798 2 to 595 exact tiling clone, capped   594/594
(100 %)
0 diff
(100 %id)
T97495 liver and spleen .l-u 1 to 328 1 to 331   tiling clone, fully sequenced,   331/331
(100 %)
8 diff
(97.6 %id)
T97496 liver and spleen .l-u 298 to 720 427 to 1   tiling clone, fully sequenced,   427/427
(100 %)
5 diff
(98.9 %id)
DA179628 amygdala .m 1 to 514 2 to 516 exact tiling clone, capped   515/515
(100 %)
1 diff
(99.9 %id)
AA294820 Bone .n-u 1 to 267 1 to 267   tiling clone,   267/267
(100 %)
0 diff
(100 %id)
BI042588 ovary .n-u 206 to 571 17 to 380 exact     364/380
(95 %)
6 diff
(98.5 %id)
BI042574 ovary .n-u 207 to 557 14 to 362 exact     349/362
(96 %)
6 diff
(98.4 %id)
BI042540 ovary .n-u 222 to 607 1 to 385 exact tiling clone,   385/385
(100 %)
4 diff
(99.0 %id)
DW464730 Liver .n-u 565 to 911 17 to 362   tiling clone,   346/362
(95 %)
6 diff
(98.4 %id)
BG953679 colon .n-u 792 to 1015 224 to 1   tiling clone,   224/224
(100 %)
1 diff
(99.6 %id)
BI042930 ovary .n-u 792 to 1015 224 to 1       224/224
(100 %)
1 diff
(99.6 %id)
AK096523 brain Gene RIPK1, variant not shown       available from FLJ, Suspected internal deletion, this clone was ignored    
AW958226   Gene RIPK1, variant not shown         Suspected internal deletion, this clone was ignored    
BG656028 Pancreas, Purified pancreatic islet Gene RIPK1, variant not shown              
BG656334 Pancreas, Purified pancreatic islet Gene RIPK1, variant not shown         Submitted on the opposite strand    
BI021215 marrow Gene RIPK1, variant not shown              
DB299435 cerebellum Gene RIPK1, variant not shown              
DA105108 cerebellum Gene RIPK1, variant not shown       capped      
DB300145 cerebellum Gene RIPK1, variant not shown              
DA115283 cerebellum Gene RIPK1, variant not shown       capped      
DB300596 cerebellum Gene RIPK1, variant not shown         This clone was ignored    
DA122777 cerebellum Gene RIPK1, variant not shown       capped This clone was ignored    
DB305204 brain Gene RIPK1, variant not shown              
DA225780 brain Gene RIPK1, variant not shown       capped      
DB306124 brain Gene RIPK1, variant not shown              
DA246053 brain Gene RIPK1, variant not shown       capped      
DB312853 thalamus Gene RIPK1, variant not shown         This clone was ignored    
DA418429 thalamus Gene RIPK1, variant not shown       capped This clone was ignored    
BX105577 liver and spleen Gene RIPK1, variant not shown              
CN288654 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 Gene RIPK1, variant not shown              
BX482042   Gene RIPK1, variant not shown         Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base)    
BX482043   Gene RIPK1, variant not shown       AAA Possibly primed on the genome, locally A rich (15/16 A in genome downstream of last aligned base)    
BX954042   Gene RIPK1, variant not shown              
BP398783 pancreatic islet Gene RIPK1, variant not shown         Submitted on the opposite strand    
AA682838 liver and spleen Gene RIPK1, variant not shown              
AI380341 B-cell, chronic lymphotic leukemia Gene RIPK1, variant not shown         Suspected internal deletion, this clone was ignored    
BF511244   Gene RIPK1, variant not shown       AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base)    
BE856953 pooled Gene RIPK1, variant not shown       AAA Suspected internal deletion, this clone was ignored    
BF968970 adrenal cortex carcinoma, cell line, adrenal gland Gene RIPK1, variant not shown         Submitted on the opposite strand    
BI599131 brain, hypothalamus Gene RIPK1, variant not shown         Suspected internal deletion, this clone was ignored    
TI_45211801   Gene RIPK1, variant not shown         Suspected internal deletion, this clone was ignored    
DB325800 brain Gene RIPK1, variant not shown         Suspected internal deletion, this clone was ignored    
DA772291 brain Gene RIPK1, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB381114 placenta Gene RIPK1, variant not shown              
DA834056 placenta Gene RIPK1, variant not shown       capped      
DB062433 testis Gene RIPK1, variant not shown       capped This clone was ignored    
DB339391 testis Gene RIPK1, variant not shown         This clone was ignored    
BM666599 eye, optic nerve Gene RIPK1, variant not shown              
BM701746 eye, optic nerve Gene RIPK1, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i-u, .j, .k, .l-u, .m, .n-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI