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Gene RIN1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
130 supporting clones for gene RIN1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
L36463   .a 1 to 2673 1 to 2673 A392D P394Q E395R Q400E L423V ... tiling clone,   2673/2676
(99 %)
17 diff
(99.4 %id)
NM_004292.2   .a 1 to 2684 1 to 2684 exact RefSeq, AAA   2684/2684
(100 %)
0 diff
(100 %id)
BE242251 leukopheresis .a 93 to 214 1 to 120       120/133
(90 %)
8 diff
(94.0 %id)
DA027338   .a 97 to 669 2 to 574   capped   573/573
(100 %)
2 diff
(99.7 %id)
BG747755 eye, normal pigmented retinal epithelium .a 106 to 876 1 to 778       778/781
(99 %)
14 diff
(98.3 %id)
BG330908 large cell carcinoma, lung .a 110 to 863 1 to 754       754/754
(100 %)
14 diff
(98.2 %id)
BC014417 Lung, large cell carcinoma .a 111 to 2684 1 to 2574 exact tiling clone, available from MGC, AAA   2574/2574
(100 %)
2 diff
(100.0 %id)
CB125665 Liver .a 112 to 614 1 to 503       503/503
(100 %)
1 diff
(99.9 %id)
BU177811 melanotic melanoma, cell line, skin .a 115 to 1009 36 to 941       906/988
(91 %)
45 diff
(95.5 %id)
BQ681598 melanotic melanoma, cell line, skin .a 115 to 674 13 to 577       565/1009
(55 %)
25 diff
(97.6 %id)
BU195794 melanotic melanoma, cell line, skin .a 116 to 925 1 to 816       816/915
(89 %)
13 diff
(98.6 %id)
BU162426 melanotic melanoma, cell line, skin .a 116 to 944 1 to 843       843/866
(97 %)
23 diff
(97.4 %id)
BU162849 melanotic melanoma, cell line, skin .a 116 to 956 1 to 849       849/919
(92 %)
25 diff
(97.3 %id)
BQ681932 melanotic melanoma, cell line, skin .a 116 to 394 1 to 279       279/286
(97 %)
2 diff
(99.4 %id)
BG763794 melanotic melanoma, high MDR (cell line), skin .a 124 to 924 1 to 803       803/835
(96 %)
14 diff
(98.4 %id)
BF000321 colon, colon tumor, RER+ .a 126 to 363 238 to 1       238/238
(100 %)
2 diff
(99.2 %id)
TI_1948149156   .a 127 to 1196 131 to 1186       1056/1279
(82 %)
53 diff
(95.9 %id)
CV028586 mixed .a 128 to 735 1 to 608       608/608
(100 %)
1 diff
(99.9 %id)
BQ960380 epidermoid carcinoma, cell line, lung .a 131 to 906 1 to 785       785/883
(88 %)
19 diff
(97.9 %id)
AA781219 parathyroid gland, parathyroid tumor .a 356 to 779 1 to 423     Submitted on the opposite strand 423/423
(100 %)
2 diff
(99.6 %id)
BF434342 fibrotheoma, ovary .a 356 to 945 1 to 590     Submitted on the opposite strand 590/591
(99 %)
1 diff
(99.9 %id)
BF434426 fibrotheoma, ovary .a 356 to 958 1 to 603     Submitted on the opposite strand 603/603
(100 %)
0 diff
(100 %id)
DA177632 amygdala .a 368 to 929 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
AB209445 brain .b 1 to 4412 5 to 4415 H7Y tiling clone,   4415/4415
(100 %)
9 diff
(99.8 %id)
DC300017   .b 385 to 955 1 to 571   tiling clone,   571/571
(100 %)
0 diff
(100 %id)
DA579228   .b 595 to 1138 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA161028 amygdala .b 609 to 1175 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
CB111808 Liver .b 650 to 993 1 to 344       344/344
(100 %)
0 diff
(100 %id)
BM810572 astrocytoma grade IV, cell line, brain .b 741 to 1453 1 to 714       714/1062
(67 %)
6 diff
(99.5 %id)
BG750141 eye, normal pigmented retinal epithelium .b 781 to 1528 1 to 746       746/1041
(71 %)
14 diff
(98.7 %id)
AW068335 Bone, Hip .b 826 to 1034 230 to 22       209/230
(90 %)
0 diff
(100 %id)
BI259896 cervical carcinoma cell line, cervix .b 863 to 1377 1 to 518       518/640
(80 %)
5 diff
(99.3 %id)
CA487685   .b 1054 to 1548 1 to 499       499/956
(52 %)
30 diff
(96.9 %id)
DA082748 cerebellum .b 1140 to 1649 2 to 512   capped   511/511
(100 %)
1 diff
(99.9 %id)
BI222881 cervical carcinoma cell line, cervix .b 1184 to 1681 1 to 515       515/526
(97 %)
29 diff
(94.5 %id)
AW068067 Bone, Hip .b 1245 to 1590 354 to 9       346/354
(97 %)
0 diff
(100 %id)
DR761176 embryonic stem .b 1296 to 2055 1 to 760       760/760
(100 %)
1 diff
(99.9 %id)
BU540488 large cell carcinoma, lung .b 1306 to 2144 22 to 867       846/926
(91 %)
18 diff
(98.1 %id)
BG332122 large cell carcinoma, lung .b 1309 to 1694 1 to 384       384/384
(100 %)
4 diff
(99.0 %id)
BM018879 astrocytoma grade IV, cell line, brain .b 1309 to 2135 1 to 835       833/948
(87 %)
44 diff
(95.4 %id)
TI_59389551   .b 1310 to 2135 101 to 934       832/947
(87 %)
43 diff
(95.5 %id)
AW068789 Bone, Hip .b 1339 to 1887 9 to 559       551/559
(98 %)
10 diff
(98.3 %id)
BM790741 stomach .b 1347 to 1872 1 to 526       526/526
(100 %)
0 diff
(100 %id)
BX284038 skin, squamous cell carcinoma .b 1356 to 1849 1 to 494       494/494
(100 %)
0 diff
(100 %id)
BG680466 skin, squamous cell carcinoma .b 1357 to 2154 1 to 789       789/798
(98 %)
16 diff
(98.0 %id)
AW966168   .b 1364 to 1900 1 to 537       537/538
(99 %)
14 diff
(97.4 %id)
TI_1948149157   .b 1404 to 2377 1093 to 127       967/1392
(69 %)
32 diff
(97.8 %id)
TI_1948149158   .b 1407 to 2377 1108 to 129       977/1388
(70 %)
44 diff
(96.9 %id)
CN484730 eye .b 1489 to 1710 1 to 222       222/222
(100 %)
0 diff
(100 %id)
CK906154 Islets of Langerhans, Pancreas .b 1530 to 2109 1 to 580       580/580
(100 %)
1 diff
(99.9 %id)
BM127550 Islets of Langerhans, Pancreas .b 1546 to 2129 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
BM126947 Islets of Langerhans, Pancreas .b 1547 to 2109 1 to 563       563/563
(100 %)
1 diff
(99.9 %id)
BM701275 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1633 to 1746 1 to 114       114/114
(100 %)
0 diff
(100 %id)
BM716793 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 1633 to 2188 1 to 556       556/556
(100 %)
1 diff
(99.9 %id)
BM826094 Ascites, stomach .b 1638 to 2059 1 to 422       422/422
(100 %)
3 diff
(99.3 %id)
BE887879 leiomyosarcoma, uterus .b 1656 to 2277 1 to 619       619/619
(100 %)
5 diff
(99.2 %id)
BF764176 colon_est .b 1704 to 1989 286 to 1     Submitted on the opposite strand 286/286
(100 %)
7 diff
(97.6 %id)
BF766209 colon_est .b 1704 to 1972 1 to 269   tiling clone,   269/269
(100 %)
0 diff
(100 %id)
BM017863 astrocytoma grade IV, cell line, brain .b 1708 to 2484 1 to 780       780/781
(99 %)
18 diff
(97.7 %id)
TI_59388440   .b 1709 to 2484 104 to 882       779/780
(99 %)
17 diff
(97.9 %id)
BP205221 coronary artery .b 1712 to 2294 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BM819388 stomach .b 1800 to 2305 1 to 506       506/506
(100 %)
3 diff
(99.5 %id)
AA400958 ovarian tumor, ovary .b 1809 to 2175 1 to 364   fully sequenced,   364/364
(100 %)
6 diff
(98.4 %id)
BG492017 amelanotic melanoma, cell line, skin .b 1854 to 2522 691 to 16       676/691
(97 %)
0 diff
(100 %id)
BU633361 cell lines, Chondrosarcoma .b 1876 to 2592 736 to 19   AAA   718/718
(100 %)
3 diff
(99.6 %id)
AI476758 pooled .b 1900 to 2583 685 to 2       684/692
(98 %)
0 diff
(100 %id)
CB853417 Human Lung Epithelial cells, lung .b 1900 to 2585 704 to 19   AAA   686/691
(99 %)
2 diff
(99.8 %id)
BG927136 cartilage .b 1922 to 2341 84 to 503       420/433
(96 %)
6 diff
(98.7 %id)
BQ675606 epidermoid carcinoma, cell line, salivary gland .b 1922 to 2591 1 to 672       672/1025
(65 %)
10 diff
(99.1 %id)
BQ331960 lung_tumor .b 1982 to 2505 535 to 15       521/560
(93 %)
0 diff
(100 %id)
AI343290 colon, colon tumor, RER+ .b 1995 to 2588 614 to 21   AAA   594/594
(100 %)
10 diff
(98.4 %id)
BM674417 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .b 2005 to 2588 601 to 19   AAA   583/583
(100 %)
1 diff
(99.9 %id)
BF000630 colon, colon tumor, RER+ .b 2055 to 2581 534 to 8       527/534
(98 %)
0 diff
(100 %id)
AA586779 colon, colon tumor RER+ .b 2080 to 2583 506 to 5       502/506
(99 %)
0 diff
(100 %id)
AA862015 squamous cell carcinoma from base of tongue, tongue .b 2094 to 2583 491 to 3       489/491
(99 %)
0 diff
(100 %id)
AA262014 germinal center B cell .b 2097 to 2583 499 to 17   AAA Submitted on the opposite strand 483/483
(100 %)
13 diff
(97.4 %id)
BU622405 cell lines, Chondrosarcoma .b 2105 to 2588 502 to 19   AAA   484/484
(100 %)
1 diff
(99.8 %id)
BG163919 hypernephroma, cell line, Kidney .b 2119 to 2583 1 to 466   AAA   466/466
(100 %)
1 diff
(99.8 %id)
BG164193 hypernephroma, cell line, Kidney .b 2120 to 2583 1 to 458   AAA   458/458
(100 %)
6 diff
(98.7 %id)
AI915425 pooled .b 2121 to 2590 472 to 2       471/532
(88 %)
0 diff
(100 %id)
AA400889 ovarian tumor, ovary .b 2145 to 2583 438 to 1   fully sequenced,   438/438
(100 %)
4 diff
(99.1 %id)
BG254316 adenocarcinoma, cell line, Prostate .b 2166 to 2583 1 to 417   AAA   417/417
(100 %)
1 diff
(99.8 %id)
AI354357 esophagus, squamous cell carcinoma .b 2172 to 2591 420 to 1       420/420
(100 %)
0 diff
(100 %id)
AA291556 ovarian tumor, ovary .b 2176 to 2583 408 to 1       408/412
(99 %)
0 diff
(100 %id)
BQ433434 melanotic melanoma, skin .b 2214 to 2588 78 to 452   AAA   375/452
(82 %)
6 diff
(98.7 %id)
AI806225 pooled .b 2317 to 2590 276 to 3       274/276
(99 %)
11 diff
(96.1 %id)
AI806406 pooled .b 2317 to 2576 277 to 18       260/277
(93 %)
0 diff
(100 %id)
AA523929 colon .b 2337 to 2588 278 to 27   AAA   252/252
(100 %)
0 diff
(100 %id)
BM850958 stomach .b 2345 to 2585 1 to 241   AAA   241/241
(100 %)
0 diff
(100 %id)
BF737377 bladder_tumor .b 2369 to 2477 1 to 106       106/106
(100 %)
7 diff
(93.4 %id)
AI224255 borderline ovarian carcinoma, ovary .b 2378 to 2584 27 to 233   AAA Submitted on the opposite strand 207/233
(88 %)
6 diff
(97.5 %id)
AI336566 invasive adenocarcinoma, lung .b 2378 to 2588 10 to 220   AAA Submitted on the opposite strand 211/220
(95 %)
6 diff
(97.3 %id)
AI334573 brain, oligodendroglioma .b 2378 to 2582 22 to 226   AAA Submitted on the opposite strand 205/226
(90 %)
6 diff
(97.4 %id)
AW073462 bone marrow, stem cell 34+/38+ .b 2378 to 2588 10 to 220   AAA Submitted on the opposite strand 211/220
(95 %)
6 diff
(97.3 %id)
AW074921 bone marrow, stem cell 34+/38+ .b 2378 to 2582 22 to 226   AAA Submitted on the opposite strand 205/226
(90 %)
6 diff
(97.4 %id)
BE138635 invasive adenocarcinoma, lung .b 2378 to 2581 13 to 216   AAA Submitted on the opposite strand 204/216
(94 %)
6 diff
(97.3 %id)
BE041980 borderline ovarian carcinoma, ovary .b 2378 to 2585 28 to 235   AAA   208/235
(88 %)
6 diff
(97.5 %id)
AI224198 borderline ovarian carcinoma, ovary .b 2380 to 2582 1 to 203   AAA Submitted on the opposite strand 203/203
(100 %)
5 diff
(97.6 %id)
AI223651 borderline ovarian carcinoma, ovary .b 2380 to 2580 1 to 201   AAA Submitted on the opposite strand 201/201
(100 %)
5 diff
(97.6 %id)
AI335069 bronchioalveolar carcinoma, lung .b 2380 to 2587 1 to 208   AAA Submitted on the opposite strand 208/208
(100 %)
7 diff
(96.7 %id)
AI349205 bone marrow, stem cell 34+/38+ .b 2380 to 2584 1 to 205   AAA Submitted on the opposite strand 205/205
(100 %)
8 diff
(96.1 %id)
AI345136 invasive adenocarcinoma, lung .b 2380 to 2587 1 to 208   AAA Submitted on the opposite strand 208/208
(100 %)
6 diff
(97.2 %id)
AI348903 invasive adenocarcinoma, lung .b 2380 to 2584 1 to 205   AAA Submitted on the opposite strand 205/205
(100 %)
7 diff
(96.6 %id)
AI349042 invasive adenocarcinoma, lung .b 2380 to 2588 1 to 209   AAA Submitted on the opposite strand 209/209
(100 %)
7 diff
(96.7 %id)
AI307517 bone marrow, stem cell 34+/38+ .b 2380 to 2581 1 to 202   AAA Submitted on the opposite strand 202/202
(100 %)
5 diff
(97.6 %id)
AI582787 anaplastic oligodendroglioma, brain .b 2387 to 2583 203 to 7       197/203
(97 %)
0 diff
(100 %id)
AI253552 Prostate .b 2421 to 2583 166 to 4       163/166
(98 %)
0 diff
(100 %id)
AK295365 corpus callosum .c 1 to 2123 1 to 2123 R133Q P502L tiling clone,   2123/2123
(100 %)
8 diff
(99.7 %id)
DC328268 corpus callosum .c 1 to 546 1 to 547       547/547
(100 %)
4 diff
(99.3 %id)
DC304607 cerebellum .c 275 to 829 1 to 555       555/555
(100 %)
2 diff
(99.7 %id)
DC386940   .c 278 to 853 1 to 576   tiling clone,   576/576
(100 %)
2 diff
(99.7 %id)
DA914303   .c 326 to 867 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
BU162754 melanotic melanoma, cell line, skin .c 356 to 916 85 to 660       578/1141
(50 %)
32 diff
(97.2 %id)
BQ673958 epidermoid carcinoma, cell line, salivary gland .c 356 to 1132 1 to 788   tiling clone,   788/911
(86 %)
25 diff
(97.3 %id)
BQ674561 epidermoid carcinoma, cell line, salivary gland .c 356 to 609 1 to 253       253/254
(99 %)
2 diff
(99.3 %id)
BM793499 Ascites, stomach .c 421 to 846 1 to 426       426/426
(100 %)
2 diff
(99.6 %id)
AK301430 synovial membrane tissue from rheumatoidarthritis .d 1 to 1834 1 to 1834 S143G tiling clone,   1834/1834
(100 %)
3 diff
(99.9 %id)
DC295670 synovial membrane tissue from rheumatioidarthritis .d 1 to 573 1 to 573       573/573
(100 %)
1 diff
(99.9 %id)
AA291217 germinal center B cell .e 1 to 439 1 to 438 S39P F40S V41S S42P S43A ... tiling clone, Submitted on the opposite strand 438/438
(100 %)
2 diff
(99.6 %id)
DC352563 brain .f 1 to 558 4 to 561 E19* tiling clone,   561/561
(100 %)
2 diff
(99.7 %id)
DC348443   .f 21 to 549 1 to 529   tiling clone,   529/529
(100 %)
0 diff
(100 %id)
DC355574   .f 28 to 544 1 to 518       518/518
(100 %)
1 diff
(99.9 %id)
BQ956294 sciatic nerve .g 1 to 831 1 to 841 V113M tiling clone,   841/863
(97 %)
22 diff
(97.5 %id)
AA322903 brain, cerebellum .g 88 to 346 1 to 259       259/259
(100 %)
0 diff
(100 %id)
T28057 brain .g 88 to 413 1 to 326   tiling clone,   326/326
(100 %)
2 diff
(99.4 %id)
BM840009 myeloma .h 1 to 479 1 to 479       479/479
(100 %)
0 diff
(100 %id)
BM839835 myeloma .h 1 to 591 1 to 591   tiling clone,   591/591
(100 %)
0 diff
(100 %id)
BM846894 myeloma .h 10 to 483 1 to 473       473/473
(100 %)
2 diff
(99.6 %id)
BM845941 myeloma .h 31 to 430 1 to 401 L44T I46H G47W K48*     401/401
(100 %)
2 diff
(99.6 %id)
AK297757   Gene RIN1, variant not shown         Suspected internal deletion, this clone was ignored    
CB047130 2 pooled tumors (clear cell type), Kidney Gene RIN1, variant not shown       fully sequenced, AAA Suspected internal deletion, this clone was ignored    
CB047131 2 pooled tumors (clear cell type), Kidney Gene RIN1, variant not shown       fully sequenced, AAA Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI