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Gene RCOR1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
300 supporting clones for gene RCOR1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AI948906 2 pooled tumors (clear cell type), Kidney .a 1 to 283 283 to 1       283/284
(99 %)
6 diff
(97.9 %id)
BQ060091 lymph, lymphoma, cell line .a 1 to 542 33 to 577   available from MGC,   545/1008
(54 %)
23 diff
(97.8 %id)
TI_159706614   .a 1 to 409 466 to 58   tiling clone,   409/1116
(36 %)
0 diff
(100 %id)
TI_159706711   .a 1 to 409 470 to 62       409/1117
(36 %)
0 diff
(100 %id)
DB455887 testis .a 6 to 181 1 to 176   tiling clone,   176/176
(100 %)
0 diff
(100 %id)
BC064495 Lymph, lymphoma .a 8 to 1121 1 to 1114   available from MGC, AAA   1114/1114
(100 %)
1 diff
(100.0 %id)
BC051003 Lymph, lymphoma .a 8 to 1121 1 to 1114   available from MGC,   1114/1114
(100 %)
1 diff
(100.0 %id)
BQ055582 lymph, lymphoma, cell line .a 9 to 594 1 to 586       586/1037
(56 %)
2 diff
(99.9 %id)
BQ056032 lymph, lymphoma, cell line .a 9 to 594 1 to 586       586/1025
(57 %)
2 diff
(99.9 %id)
BQ061904 lymph, lymphoma, cell line .a 9 to 875 1 to 874       874/994
(87 %)
28 diff
(97.2 %id)
BQ643257 lymph, lymphoma, cell line .a 9 to 426 1 to 418       418/1052
(39 %)
2 diff
(99.9 %id)
BQ898926 lymph, lymphoma, cell line .a 9 to 594 1 to 586   available from MGC,   586/867
(67 %)
4 diff
(99.6 %id)
AW297119   .a 10 to 300 291 to 1       291/300
(97 %)
1 diff
(99.7 %id)
AI337324 colon, colon tumor, RER+ .a 23 to 283 261 to 1       261/261
(100 %)
0 diff
(100 %id)
AI380674 B-cell, chronic lymphotic leukemia .a 44 to 283 240 to 1       240/240
(100 %)
1 diff
(99.6 %id)
BF002505 colon, colon tumor, RER+ .a 45 to 292 249 to 1       249/249
(100 %)
4 diff
(98.4 %id)
BC111590 Synthetic constructs .a 228 to 1692 20 to 1484   tiling clone,   1465/1510
(97 %)
7 diff
(99.6 %id)
AF155595   .a 243 to 1691 1 to 1449       1449/1449
(100 %)
0 diff
(100 %id)
NM_015156.2   .a 243 to 5760 1 to 5518   RefSeq, AAA   5518/5518
(100 %)
0 diff
(100 %id)
AI018539 pooled .a 294 to 804 1 to 511     Submitted on the opposite strand 511/513
(99 %)
7 diff
(98.7 %id)
AI524265 B-cell, chronic lymphotic leukemia .a 294 to 795 1 to 503     Submitted on the opposite strand 503/503
(100 %)
2 diff
(99.7 %id)
AW001755 Kidney .a 294 to 927 1 to 633     Submitted on the opposite strand 633/633
(100 %)
6 diff
(99.1 %id)
AW058008 thymus, pooled .a 294 to 903 1 to 614     Submitted on the opposite strand 614/657
(93 %)
20 diff
(97.0 %id)
AW072551 pooled .a 294 to 842 1 to 547     Submitted on the opposite strand 547/579
(94 %)
17 diff
(97.1 %id)
AW182361 pooled .a 294 to 808 1 to 516     Submitted on the opposite strand 516/516
(100 %)
2 diff
(99.7 %id)
AI086014 B-cell, chronic lymphotic leukemia .a 312 to 794 1 to 483     Submitted on the opposite strand 483/483
(100 %)
0 diff
(100 %id)
AI808613 pooled .a 340 to 778 1 to 439     Submitted on the opposite strand 439/439
(100 %)
14 diff
(96.9 %id)
AW628690 pooled .a 387 to 1099 1 to 714     Submitted on the opposite strand 714/714
(100 %)
10 diff
(98.6 %id)
AW179055 stomach .a 489 to 829 1 to 341       341/341
(100 %)
0 diff
(100 %id)
D31888   .a 501 to 5739 1 to 5241   tiling clone, available from KIAA,   5241/5241
(100 %)
1 diff
(100.0 %id)
BI830459 brain, medulla .a 538 to 1211 1 to 692       690/959
(71 %)
28 diff
(97.1 %id)
BQ219259 epithelioid carcinoma, Pancreas .a 584 to 1121 574 to 37   AAA Submitted on the opposite strand 538/942
(57 %)
10 diff
(99.0 %id)
TI_57171297   .a 585 to 1211 82 to 726       643/993
(64 %)
28 diff
(97.2 %id)
AA491057 germinal center B cell .a 648 to 1093 446 to 1     Submitted on the opposite strand 446/446
(100 %)
1 diff
(99.8 %id)
BF355760 head_neck .a 853 to 1117 38 to 303       266/319
(83 %)
10 diff
(96.9 %id)
BF035206 adenocarcinoma, ovary .a 944 to 1576 1 to 630       630/912
(69 %)
9 diff
(99.1 %id)
BI032107 marrow .a 1014 to 1318 18 to 318       303/328
(92 %)
15 diff
(95.5 %id)
BI022121 marrow .a 1088 to 1473 11 to 409       399/410
(97 %)
15 diff
(96.4 %id)
BX282746 melanotic melanoma, skin .a 1133 to 1635 1 to 503       503/503
(100 %)
0 diff
(100 %id)
BQ423057 melanotic melanoma, skin .a 1134 to 1981 1 to 855       855/858
(99 %)
11 diff
(98.8 %id)
DA404728 thalamus .a 1141 to 1676 2 to 537   capped   536/536
(100 %)
0 diff
(100 %id)
BX437152 thymus .a 1164 to 1923 1 to 762       762/839
(90 %)
53 diff
(93.7 %id)
BG576156 breast, mammary adenocarcinoma, cell line .a 1278 to 2068 15 to 806       792/806
(98 %)
9 diff
(98.9 %id)
DA506400 brain .a 1294 to 1858 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
BQ213201 embryonal carcinoma, cell line, testis .a 1347 to 2226 1 to 884       884/884
(100 %)
8 diff
(99.1 %id)
CN313066 embryonic stem cells, cell lines H1, H7, andH9 .a 1431 to 2122 1 to 692       692/692
(100 %)
2 diff
(99.8 %id)
AK026612   .a 1466 to 2994 1 to 1529   available from FLJ, AAA   1529/1529
(100 %)
2 diff
(99.9 %id)
DR003154 fetal brain .a 1493 to 2109 7 to 623       617/623
(99 %)
6 diff
(99.1 %id)
DB096328 testis .a 1501 to 2035 2 to 536   capped   535/535
(100 %)
2 diff
(99.7 %id)
DA991949 synovial membrane tissue from rheumatioidarthritis .a 1519 to 2062 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
BM006648 ductal carcinoma, cell line, Pancreas .a 1529 to 2436 1 to 912       912/913
(99 %)
37 diff
(96.0 %id)
TI_59395412   .a 1530 to 2436 58 to 968       911/912
(99 %)
36 diff
(96.1 %id)
BQ691087 ductal carcinoma, cell line, Pancreas .a 1531 to 2335 1 to 814       814/964
(84 %)
18 diff
(98.2 %id)
DB086927 testis .a 1531 to 2088 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
BG818986 anaplastic oligodendroglioma with 1p/19qloss, brain .a 1539 to 2122 1 to 599       599/768
(77 %)
23 diff
(97.1 %id)
CA424962 cell lines, Chondrosarcoma .a 1571 to 2224 670 to 17   AAA   654/654
(100 %)
1 diff
(99.9 %id)
BI025730 marrow .a 1575 to 1970 425 to 30       396/425
(93 %)
0 diff
(100 %id)
BE004063 breast_normal .a 1579 to 1770 1 to 192       192/192
(100 %)
3 diff
(98.5 %id)
BE003968 breast_normal .a 1581 to 1779 11 to 214       204/230
(88 %)
16 diff
(93.1 %id)
BI025752 marrow .a 1589 to 1960 371 to 2       370/371
(99 %)
0 diff
(100 %id)
CN313069 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 1609 to 1845 1 to 238       238/238
(100 %)
2 diff
(99.2 %id)
DB280923 uterus .a 1627 to 2163 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
DB063017 testis .a 1630 to 2201 2 to 574   capped   573/573
(100 %)
3 diff
(99.5 %id)
DA799793 brain .a 1640 to 2194 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DA800519 brain .a 1640 to 2210 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
BM457149 embryonal carcinoma, cell line, testis .a 1674 to 2548 1 to 886       886/921
(96 %)
16 diff
(98.3 %id)
BF824874 head_normal .a 1725 to 2140 417 to 2     Submitted on the opposite strand 416/417
(99 %)
0 diff
(100 %id)
DA461622 tongue, tumor tissue .a 1906 to 2481 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DB080062 testis .a 1919 to 2478 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA854700 placenta .a 2000 to 2579 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
BF821703 kidney_tumor .a 2054 to 2472 15 to 428       414/435
(95 %)
6 diff
(98.7 %id)
BF821713 kidney_tumor .a 2066 to 2472 49 to 453       405/460
(88 %)
3 diff
(99.4 %id)
BU430426 lymph .a 2066 to 2508 1 to 443       443/443
(100 %)
5 diff
(98.9 %id)
TI_154151834   .a 2071 to 2745 78 to 754       677/678
(99 %)
36 diff
(94.7 %id)
DB208740 trachea .a 2146 to 2517 2 to 373   capped   372/372
(100 %)
0 diff
(100 %id)
DA441347 tongue, tumor tissue .a 2157 to 2738 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA491291 brain .a 2196 to 2767 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
DA859101 placenta .a 2204 to 2786 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
DA797119 brain .a 2230 to 2790 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA097417 cerebellum .a 2248 to 2826 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
DA803612 brain .a 2295 to 2866 2 to 573   capped   572/572
(100 %)
3 diff
(99.5 %id)
AA382833 testis .a 2301 to 2582 1 to 282       282/282
(100 %)
0 diff
(100 %id)
AA337668 endometrium .a 2330 to 2640 1 to 312       312/313
(99 %)
4 diff
(98.8 %id)
BM720612 eye, fetal eye .a 2344 to 3063 1 to 720       720/720
(100 %)
0 diff
(100 %id)
DB080948 testis .a 2362 to 2922 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DA706008   .a 2409 to 2981 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA440337 tongue, tumor tissue .a 2525 to 3064 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
CF136308 lymph .a 2532 to 3094 8 to 570       563/570
(98 %)
6 diff
(99.0 %id)
TI_154165228   .a 2532 to 3289 80 to 851       772/817
(94 %)
28 diff
(96.6 %id)
BF082111 breast_normal .a 2543 to 2863 1 to 320       320/326
(98 %)
3 diff
(99.1 %id)
DB141887 thymus .a 2553 to 3094 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DA149422 amygdala .a 2562 to 3071 2 to 511   capped   510/510
(100 %)
0 diff
(100 %id)
BQ677685 melanotic melanoma, cell line, skin .a 2564 to 3125 1 to 571       571/963
(59 %)
14 diff
(98.6 %id)
BF002811 Prostate .a 2565 to 2994 430 to 1       430/430
(100 %)
0 diff
(100 %id)
BF437188 Prostate .a 2565 to 2990 431 to 6       426/431
(98 %)
0 diff
(100 %id)
DA188379 amygdala .a 2570 to 3109 2 to 541   capped   540/540
(100 %)
0 diff
(100 %id)
AI686394 Prostate .a 2577 to 2994 441 to 24   AAA   418/418
(100 %)
4 diff
(99.1 %id)
DB079673 testis .a 2578 to 3127 2 to 554   capped   553/553
(100 %)
3 diff
(99.5 %id)
DA991753 synovial membrane tissue from rheumatioidarthritis .a 2583 to 3128 2 to 550   capped   549/549
(100 %)
5 diff
(99.1 %id)
DB142588 thymus .a 2583 to 3118 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
BE536823 cervix .a 2584 to 3179 8 to 607       600/789
(76 %)
29 diff
(96.4 %id)
AI669120 Prostate .a 2597 to 2983 398 to 12       387/398
(97 %)
0 diff
(100 %id)
DA863570 placenta .a 2689 to 3338 2 to 651   capped   650/650
(100 %)
0 diff
(100 %id)
DB165322 thymus .a 2693 to 3257 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB140332 thymus .a 2697 to 3263 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
CN313064 embryonic stem cells, cell lines H1, H7, andH9 .a 2734 to 3448 1 to 715       715/715
(100 %)
1 diff
(99.9 %id)
N79172 liver and spleen .a 2738 to 2960 223 to 1     Submitted on the opposite strand 223/223
(100 %)
0 diff
(100 %id)
DB163180 thymus .a 2740 to 3337 2 to 599   capped   598/598
(100 %)
0 diff
(100 %id)
BQ441870 embryonal carcinoma, cell line, testis .a 2762 to 3834 27 to 1093       1067/1093
(97 %)
6 diff
(99.5 %id)
DB142809 thymus .a 2807 to 3283 2 to 478   capped   477/477
(100 %)
2 diff
(99.6 %id)
CA395137 eye, RPE/choroid .a 2808 to 3266 1 to 459       459/459
(100 %)
0 diff
(100 %id)
BM542867 embryonal carcinoma, cell line, testis .a 2820 to 3762 1 to 948       948/993
(95 %)
24 diff
(97.6 %id)
CN313068 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2836 to 3548 1 to 712       712/712
(100 %)
1 diff
(99.9 %id)
DA438349 tongue, tumor tissue .a 2843 to 3394 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
AL709329 human skeletal muscle .a 2858 to 3496 1 to 640       640/640
(100 %)
1 diff
(99.9 %id)
BI020122 marrow .a 2876 to 3387 530 to 18       513/530
(96 %)
0 diff
(100 %id)
DB153434 thymus .a 2915 to 3504 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
CN313067 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 2938 to 3273 1 to 339       339/339
(100 %)
2 diff
(99.5 %id)
BI090347 cervix .a 2953 to 3799 1 to 859       859/859
(100 %)
33 diff
(96.2 %id)
DB098507 testis .a 2971 to 3544 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA664642   .a 2980 to 3533 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
BX494913 Liver .a 3016 to 3272 1 to 257       257/257
(100 %)
0 diff
(100 %id)
BI524039 pooled lung and spleen .a 3024 to 3780 1 to 765       765/769
(99 %)
23 diff
(97.1 %id)
TI_44159882   .a 3024 to 3780 31 to 795       765/799
(95 %)
23 diff
(97.2 %id)
AW865293 stomach_normal .a 3042 to 3195 155 to 2       154/155
(99 %)
0 diff
(100 %id)
AW865311 stomach_normal .a 3042 to 3199 157 to 1       157/157
(100 %)
4 diff
(97.5 %id)
BE002643 breast_normal .a 3087 to 3573 1 to 485       485/485
(100 %)
3 diff
(99.4 %id)
DA902139   .a 3113 to 3696 2 to 585   capped   584/584
(100 %)
1 diff
(99.9 %id)
AU135619 placenta .a 3119 to 3846 2 to 735   capped   734/743
(98 %)
16 diff
(97.9 %id)
BU431776 lymph .a 3159 to 3585 8 to 434       427/434
(98 %)
6 diff
(98.7 %id)
TI_154153722   .a 3159 to 3644 81 to 566       486/495
(98 %)
1 diff
(99.8 %id)
BG168138 hypernephroma, cell line, Kidney .a 3186 to 3892 1 to 688       688/940
(73 %)
15 diff
(98.5 %id)
AU137705 placenta .a 3210 to 3930 2 to 726   capped   725/738
(98 %)
8 diff
(99.0 %id)
X85650   .a 3213 to 3898 1 to 667       667/793
(84 %)
11 diff
(98.7 %id)
BX641460   .a 3215 to 3582 1 to 368       368/368
(100 %)
0 diff
(100 %id)
DB184145 liver, tumor tissue .a 3219 to 3785 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
BF734076 amnion_normal .a 3240 to 3544 300 to 1     Submitted on the opposite strand 300/300
(100 %)
8 diff
(97.4 %id)
AA742268 germinal center B cell .a 3273 to 3744 1 to 472     Submitted on the opposite strand 472/472
(100 %)
0 diff
(100 %id)
CN313065 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 3282 to 3934 1 to 653       653/653
(100 %)
17 diff
(97.4 %id)
AW085218 pooled .a 3286 to 3747 1 to 462     Submitted on the opposite strand 462/462
(100 %)
1 diff
(99.8 %id)
BG392186 embryonal carcinoma, cell line, testis .a 3310 to 3408 1 to 99       99/105
(94 %)
4 diff
(96.2 %id)
DA447515 tongue, tumor tissue .a 3352 to 3940 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
BM739080 Ascites, stomach .a 3354 to 3841 1 to 488       488/488
(100 %)
0 diff
(100 %id)
BM475707 embryonal carcinoma, cell line, testis .a 3357 to 4214 1 to 868       868/1013
(85 %)
17 diff
(98.4 %id)
DA955504 Spleen .a 3360 to 3914 2 to 556   capped   555/555
(100 %)
3 diff
(99.5 %id)
DB124055 thymus .a 3361 to 3853 2 to 494   capped   493/493
(100 %)
0 diff
(100 %id)
DA506150 brain .a 3364 to 3924 2 to 563   capped   562/562
(100 %)
2 diff
(99.7 %id)
DA526386 brain .a 3367 to 3931 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA595889   .a 3369 to 4091 2 to 724   capped   723/724
(99 %)
1 diff
(99.9 %id)
R91788 liver and spleen .a 3402 to 3693 1 to 293       293/293
(100 %)
1 diff
(99.7 %id)
AU137197 placenta .a 3464 to 4132 2 to 679   capped   678/705
(96 %)
18 diff
(97.5 %id)
DA959098 Spleen .a 3468 to 4032 2 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
BE003104 breast_normal .a 3481 to 3842 371 to 10     Submitted on the opposite strand 362/371
(97 %)
0 diff
(100 %id)
CN313070 embryonic stem cells, cell lines H1, H7, andH9 .a 3485 to 4183 1 to 699       699/699
(100 %)
2 diff
(99.8 %id)
CX870007 embryonic stem .a 3493 to 4130 1 to 638       638/638
(100 %)
0 diff
(100 %id)
BE819530 breast_normal .a 3498 to 3947 449 to 1       449/454
(98 %)
4 diff
(99.2 %id)
BE003020 breast_normal .a 3526 to 3842 325 to 9     Submitted on the opposite strand 317/325
(97 %)
0 diff
(100 %id)
DA881860   .a 3527 to 4078 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
BI086977 cervix .a 3552 to 4425 1 to 884   AAA   884/898
(98 %)
35 diff
(96.2 %id)
AA337568 endometrium .a 3554 to 3858 1 to 305       305/305
(100 %)
0 diff
(100 %id)
BI088621 cervix .a 3636 to 4134 1 to 504       504/970
(51 %)
16 diff
(98.4 %id)
R16318 whole brain .a 3648 to 3996 1 to 352       352/354
(99 %)
6 diff
(98.4 %id)
H09692 whole brain .a 3648 to 4088 1 to 449       449/450
(99 %)
9 diff
(98.0 %id)
AA300962 testis .a 3669 to 3986 1 to 318       318/318
(100 %)
2 diff
(99.4 %id)
AW963876   .a 3670 to 4229 1 to 563       563/570
(98 %)
13 diff
(97.8 %id)
AW963882   .a 3670 to 4238 1 to 570       570/571
(99 %)
25 diff
(95.7 %id)
AV750663 Pituitary .a 3679 to 4041 1 to 351       351/351
(100 %)
7 diff
(98.1 %id)
BP417929 small intestine .a 3703 to 4160 1 to 459     Submitted on the opposite strand 459/459
(100 %)
30 diff
(93.5 %id)
BG960697 colon .a 3808 to 4211 402 to 5       398/402
(99 %)
0 diff
(100 %id)
BI093868 cervix .a 3826 to 4553 1 to 735       735/797
(92 %)
24 diff
(97.0 %id)
DA041944 bladder .a 3828 to 4402 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA905602   .a 3833 to 4397 2 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
BM728410 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 3841 to 4554 1 to 714       714/714
(100 %)
3 diff
(99.6 %id)
CB127320 cervix, Uterine .a 3894 to 4460 1 to 567       567/567
(100 %)
0 diff
(100 %id)
CB127889 cervix, Uterine .a 3894 to 4437 1 to 544       544/544
(100 %)
0 diff
(100 %id)
BE893373 melanotic melanoma, skin .a 3925 to 4614 1 to 698       698/901
(77 %)
38 diff
(95.8 %id)
BM679322 eye, fetal eye .a 3928 to 4436 527 to 19   AAA   509/509
(100 %)
0 diff
(100 %id)
AF114139 lung .a 3942 to 4150 209 to 1       209/209
(100 %)
0 diff
(100 %id)
AA708175 liver and spleen .a 3982 to 4443 463 to 2       462/466
(99 %)
0 diff
(100 %id)
BI091013 cervix .a 4015 to 4767 1 to 739       739/740
(99 %)
24 diff
(96.8 %id)
BE538173 cervix .a 4028 to 4702 1 to 677       677/817
(82 %)
17 diff
(98.0 %id)
BP419316 small intestine .a 4153 to 4553 1 to 401     Submitted on the opposite strand 401/401
(100 %)
0 diff
(100 %id)
DB376285 placenta .a 5158 to 5742 581 to 1   tiling clone,   581/589
(98 %)
24 diff
(96.0 %id)
DB377082 placenta .a 5195 to 5739 541 to 1       541/608
(88 %)
19 diff
(96.9 %id)
DB319686   .a 5271 to 5731 458 to 1       458/458
(100 %)
6 diff
(98.7 %id)
AU156179 placenta .a 5281 to 5739 458 to 1       458/458
(100 %)
3 diff
(99.4 %id)
H09652 whole brain .a 5377 to 5746 383 to 5   tiling clone,   379/387
(97 %)
0 diff
(100 %id)
R41395 whole brain .a 5492 to 5725 238 to 1       238/238
(100 %)
6 diff
(97.5 %id)
R91789 liver and spleen .a 5494 to 5715 222 to 1       222/222
(100 %)
2 diff
(99.1 %id)
AW469564 pooled .b 1 to 470 470 to 1   tiling clone,   470/470
(100 %)
5 diff
(99.0 %id)
AW779126 pooled .b 169 to 470 304 to 1   tiling clone,   304/304
(100 %)
2 diff
(99.4 %id)
AA769448 germinal center B cell .b 408 to 884 480 to 5   tiling clone,   476/480
(99 %)
0 diff
(100 %id)
CB996198 placenta, pre-eclamptic placenta .b 721 to 1202 20 to 504   tiling clone, AAA   485/959
(50 %)
9 diff
(99.1 %id)
AL079580 testis .b 834 to 1039 1 to 207   tiling clone,   207/207
(100 %)
3 diff
(98.6 %id)
BX643933   .c-u 1 to 641 1 to 641 exact tiling clone,   641/641
(100 %)
7 diff
(99.0 %id)
AU118157 whole embryo, mainly head .d-u 1 to 862 2 to 861   tiling clone, capped   860/860
(100 %)
7 diff
(99.2 %id)
AU134409 ovary, tumor tissue .d-u 5 to 611 2 to 609   tiling clone, capped   608/608
(100 %)
3 diff
(99.6 %id)
CK430683 eye, lacrimal gland .d-u 99 to 721 1 to 623       623/623
(100 %)
0 diff
(100 %id)
BF093311 testis_normal .d-u 141 to 563 1 to 423       423/423
(100 %)
11 diff
(97.4 %id)
AA456869 germinal center B cell .d-u 154 to 571 1 to 420       420/420
(100 %)
2 diff
(99.6 %id)
T94912 lung .d-u 207 to 623 1 to 421       421/434
(97 %)
8 diff
(98.2 %id)
BQ933786 sciatic nerve .d-u 232 to 1018 1 to 792       792/956
(82 %)
27 diff
(97.2 %id)
BE873487 adenocarcinoma, colon .d-u 246 to 1030 1 to 793       793/800
(99 %)
53 diff
(93.4 %id)
W02255 liver and spleen .d-u 283 to 730 1 to 451       451/451
(100 %)
4 diff
(99.2 %id)
CB113118 Liver .d-u 292 to 710 1 to 419       419/419
(100 %)
1 diff
(99.8 %id)
CB116728 Liver .d-u 292 to 678 1 to 387       387/387
(100 %)
1 diff
(99.8 %id)
T10125   .d-u 298 to 602 13 to 319       307/319
(96 %)
6 diff
(98.2 %id)
AF070627 brain .d-u 301 to 1601 1 to 1301 exact tiling clone, AAA   1301/1301
(100 %)
1 diff
(100.0 %id)
F13020 brain, total brain .d-u 301 to 581 1 to 281       281/281
(100 %)
3 diff
(99.0 %id)
F12099 brain, total brain .d-u 301 to 651 1 to 351       351/351
(100 %)
1 diff
(99.8 %id)
T77599 whole brain .d-u 301 to 751 1 to 464       464/491
(94 %)
15 diff
(97.0 %id)
R35595 whole brain .d-u 301 to 682 1 to 395       395/472
(83 %)
20 diff
(95.8 %id)
H11870 whole brain .d-u 302 to 713 1 to 421       421/447
(94 %)
12 diff
(97.4 %id)
T80507 whole brain .d-u 324 to 658 1 to 348       348/362
(96 %)
18 diff
(95.1 %id)
T66052 whole brain .d-u 331 to 713 1 to 389       389/512
(75 %)
8 diff
(98.5 %id)
T80506.
matches multiple genes
whole brain .d-u 331 to 642 1 to 315     also hits gene GRM5 315/497
(63 %)
5 diff
(99.0 %id)
R59117 whole brain .d-u 331 to 713 1 to 383       383/490
(78 %)
2 diff
(99.6 %id)
AA148639 uterus .d-u 345 to 655 1 to 321       321/403
(79 %)
14 diff
(96.6 %id)
AA236061 germinal center B cell .d-u 417 to 881 1 to 465       465/465
(100 %)
0 diff
(100 %id)
AA417594 germinal center B cell .d-u 417 to 795 1 to 381       381/382
(99 %)
13 diff
(96.6 %id)
BQ057103 lymph, lymphoma, cell line .d-u 419 to 1055 1 to 643       643/1121
(57 %)
17 diff
(98.5 %id)
R96324 liver and spleen .d-u 440 to 657 1 to 219       219/219
(100 %)
1 diff
(99.6 %id)
AA284927 germinal center B cell .d-u 454 to 877 1 to 423     Submitted on the opposite strand 423/423
(100 %)
1 diff
(99.8 %id)
AW799163 uterus .d-u 524 to 1097 573 to 2 S26G     572/573
(99 %)
0 diff
(100 %id)
BU429293 lymph .d-u 534 to 1066 22 to 553       532/553
(96 %)
6 diff
(99.0 %id)
TI_154150330   .d-u 534 to 1267 95 to 819 exact     725/740
(97 %)
34 diff
(95.5 %id)
R30800 placenta .d-u 547 to 861 1 to 322       322/332
(96 %)
17 diff
(94.9 %id)
BU860522 adenocarcinoma, cell line, breast .d-u 572 to 1451 1 to 891 C55R     891/896
(99 %)
23 diff
(97.5 %id)
BG740225 skin .d-u 604 to 1380 1 to 778 exact     778/778
(100 %)
15 diff
(98.1 %id)
H57286 liver and spleen .d-u 626 to 1086 13 to 492 D24G S25F S26K F27L Y28L ...     480/495
(96 %)
21 diff
(95.8 %id)
DR423371 eye, Pterygium .d-u 635 to 1244 1 to 609 exact     609/609
(100 %)
7 diff
(98.9 %id)
BM471764 melanotic melanoma, skin .d-u 643 to 1607 1 to 980 exact     980/1060
(92 %)
29 diff
(97.3 %id)
TI_149299696   .d-u 670 to 1583 976 to 79 Q30S V31E K32T L33F S34L ... AAA   898/979
(91 %)
26 diff
(97.4 %id)
R76584 placenta .d-u 678 to 975 1 to 301       301/457
(65 %)
4 diff
(99.2 %id)
BG493793 lung, mucoepidermoid carcinoma .d-u 688 to 1487 1 to 793 exact     793/793
(100 %)
19 diff
(97.7 %id)
R10580 liver and spleen .d-u 777 to 1086 1 to 319 R20L V40G A41S R42Q S43G ...     319/397
(80 %)
11 diff
(97.3 %id)
R83218 breast .d-u 785 to 1208 1 to 431 exact     431/496
(86 %)
10 diff
(98.0 %id)
AL042190 testis .d-u 811 to 1360 1 to 553 exact     553/553
(100 %)
4 diff
(99.3 %id)
AA252747 germinal center B cell .d-u 834 to 1256 1 to 423 exact     423/423
(100 %)
2 diff
(99.6 %id)
AA278784 germinal center B cell .d-u 834 to 1267 1 to 434 exact     434/434
(100 %)
2 diff
(99.6 %id)
BU622020 Cell Line, Chondrosarcoma .d-u 841 to 1598 758 to 1 exact     758/758
(100 %)
6 diff
(99.3 %id)
T59898 ovary .d-u 844 to 1205 1 to 367 exact   Submitted on the opposite strand 367/548
(66 %)
6 diff
(99.0 %id)
BU742192 eye, fetal eye .d-u 882 to 1598 716 to 1       716/716
(100 %)
9 diff
(98.8 %id)
FN107178 breast carcinoma .d-u 891 to 998 109 to 1     Submitted on the opposite strand 109/109
(100 %)
1 diff
(99.1 %id)
CA443485 Fibrosarcoma .d-u 899 to 1583 700 to 16   AAA   685/685
(100 %)
0 diff
(100 %id)
BM975991 lung, Primary Lung Cystic Fibrosis EpithelialCells .d-u 900 to 1583 697 to 16   AAA   682/682
(100 %)
1 diff
(99.9 %id)
DB521320 testis .d-u 901 to 1580 1 to 680   AAA Submitted on the opposite strand 680/680
(100 %)
2 diff
(99.8 %id)
AA370849 Prostate .d-u 923 to 1322 1 to 398       398/398
(100 %)
4 diff
(99.0 %id)
BU625011 cell lines, Enchondroma .d-u 923 to 1574 670 to 19   AAA   652/656
(99 %)
2 diff
(99.7 %id)
CB146399 Liver .d-u 934 to 1414 1 to 480       480/480
(100 %)
6 diff
(98.8 %id)
AW057546 pooled .d-u 968 to 1595 628 to 1       628/628
(100 %)
0 diff
(100 %id)
AA259022 germinal center B cell .d-u 1003 to 1441 1 to 438       438/438
(100 %)
1 diff
(99.8 %id)
AA457026 germinal center B cell .d-u 1015 to 1583 569 to 1       569/572
(99 %)
0 diff
(100 %id)
BF439384 pooled .d-u 1032 to 1571 540 to 1       540/540
(100 %)
0 diff
(100 %id)
AU144796 whole embryo, mainly head .d-u 1039 to 1596 555 to 1       555/558
(99 %)
8 diff
(98.6 %id)
AU155404 ovary, tumor tissue .d-u 1039 to 1580 539 to 1       539/543
(99 %)
16 diff
(97.1 %id)
R27636 placenta .d-u 1054 to 1243 190 to 1       190/377
(50 %)
4 diff
(99.0 %id)
BE301408 cervical carcinoma cell line, cervix .d-u 1086 to 1584 499 to 1       499/499
(100 %)
0 diff
(100 %id)
BF978714 melanotic melanoma, high MDR, skin .d-u 1087 to 1598 24 to 536       513/702
(73 %)
6 diff
(99.2 %id)
BF690729 melanotic melanoma, high MDR, skin .d-u 1087 to 1580 24 to 516   AAA   493/516
(95 %)
7 diff
(98.7 %id)
AA236908 germinal center B cell .d-u 1109 to 1580 472 to 1       472/472
(100 %)
0 diff
(100 %id)
FN087555 breast carcinoma .d-u 1118 to 1182 1 to 65       65/79
(82 %)
1 diff
(98.8 %id)
AA482034 germinal center B cell .d-u 1127 to 1587 466 to 6       461/466
(98 %)
0 diff
(100 %id)
BQ005118 Chondrosarcoma, Left Pelvis .d-u 1132 to 1583 471 to 19   AAA   453/453
(100 %)
5 diff
(98.9 %id)
AA781251 parathyroid gland, parathyroid tumor .d-u 1147 to 1573 432 to 6       427/432
(98 %)
0 diff
(100 %id)
AA679728   .d-u 1148 to 1583 435 to 1       435/435
(100 %)
1 diff
(99.8 %id)
AA781223 parathyroid gland, parathyroid tumor .d-u 1149 to 1428 280 to 1       280/280
(100 %)
8 diff
(97.2 %id)
BX098274 whole brain .d-u 1155 to 1602 459 to 14       446/459
(97 %)
0 diff
(100 %id)
AI351502   .d-u 1157 to 1577 426 to 6       421/426
(98 %)
0 diff
(100 %id)
BE350243 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .d-u 1159 to 1573 420 to 6       415/420
(98 %)
0 diff
(100 %id)
T94867 lung .d-u 1163 to 1556 403 to 1       403/413
(97 %)
14 diff
(96.7 %id)
AI168200 pooled .d-u 1165 to 1601 454 to 18   AAA   437/437
(100 %)
0 diff
(100 %id)
AI081926 senescent fibroblast .d-u 1165 to 1587 424 to 2       423/424
(99 %)
0 diff
(100 %id)
AI758767 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .d-u 1170 to 1589 421 to 2       420/421
(99 %)
0 diff
(100 %id)
AI572024 adenocarcinoma, Pancreas .d-u 1173 to 1586 414 to 1       414/414
(100 %)
1 diff
(99.8 %id)
AI493627 adenocarcinoma, Pancreas .d-u 1181 to 1582 404 to 3       402/404
(99 %)
0 diff
(100 %id)
AI183709 lung .d-u 1190 to 1582 393 to 1       393/393
(100 %)
1 diff
(99.8 %id)
AI184058 lung .d-u 1190 to 1580 391 to 1       391/391
(100 %)
1 diff
(99.8 %id)
H11510 whole brain .d-u 1198 to 1602 428 to 9       420/437
(96 %)
0 diff
(100 %id)
AI094189 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d-u 1199 to 1580 392 to 11   AAA   382/382
(100 %)
0 diff
(100 %id)
BQ026678 placenta .d-u 1206 to 1583 392 to 15   AAA   378/378
(100 %)
0 diff
(100 %id)
R10581 liver and spleen .d-u 1218 to 1579 372 to 7       366/374
(97 %)
5 diff
(98.7 %id)
AA148693 uterus .d-u 1218 to 1583 373 to 1       373/401
(93 %)
9 diff
(97.8 %id)
R76585 placenta .d-u 1227 to 1556 347 to 1       347/399
(86 %)
23 diff
(94.3 %id)
DB532967 hippocampus .d-u 1234 to 1572 1 to 342     Submitted on the opposite strand 342/342
(100 %)
12 diff
(96.5 %id)
AI263305 adenocarcinoma, Pancreas .d-u 1239 to 1589 352 to 2       351/352
(99 %)
0 diff
(100 %id)
AI290579 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d-u 1241 to 1565 325 to 1       325/325
(100 %)
3 diff
(99.1 %id)
R38849 whole brain .d-u 1242 to 1602 377 to 9       369/382
(96 %)
0 diff
(100 %id)
AA831255 germinal center B cell .d-u 1242 to 1576 359 to 25   AAA   335/335
(100 %)
1 diff
(99.8 %id)
AI472617 pooled .d-u 1243 to 1492 250 to 1       250/250
(100 %)
0 diff
(100 %id)
AA781879   .d-u 1256 to 1573 320 to 3       318/320
(99 %)
0 diff
(100 %id)
AA262883 germinal center B cell .d-u 1258 to 1580 323 to 1       323/323
(100 %)
0 diff
(100 %id)
T59989 ovary .d-u 1266 to 1580 321 to 1     Submitted on the opposite strand 321/321
(100 %)
12 diff
(96.3 %id)
R39241 whole brain .d-u 1267 to 1573 310 to 1       310/310
(100 %)
13 diff
(95.9 %id)
R96325 liver and spleen .d-u 1280 to 1575 296 to 1       296/296
(100 %)
2 diff
(99.4 %id)
AA483699 Ewing's sarcoma .d-u 1287 to 1580 1 to 294   AAA   294/294
(100 %)
2 diff
(99.4 %id)
F09737 brain, total brain .d-u 1294 to 1601 308 to 1       308/308
(100 %)
1 diff
(99.7 %id)
FN170461 breast carcinoma .d-u 1305 to 1406 1 to 99       99/106
(93 %)
4 diff
(96.3 %id)
F10616 brain, total brain .d-u 1306 to 1601 296 to 1       296/296
(100 %)
0 diff
(100 %id)
T23504   .d-u 1307 to 1599 299 to 7       293/299
(97 %)
0 diff
(100 %id)
T10124   .d-u 1309 to 1601 299 to 7       293/299
(97 %)
0 diff
(100 %id)
R09165 liver and spleen .d-u 1313 to 1574 275 to 7       269/278
(96 %)
0 diff
(100 %id)
H72668 liver and spleen .d-u 1316 to 1574 263 to 3       261/263
(99 %)
0 diff
(100 %id)
T65240 whole brain .d-u 1324 to 1602 286 to 8   tiling clone,   279/286
(97 %)
0 diff
(100 %id)
AA860890 parathyroid gland, parathyroid tumor .d-u 1334 to 1573 245 to 6       240/245
(97 %)
0 diff
(100 %id)
AA282771 germinal center B cell .d-u 1335 to 1584 250 to 1     Submitted on the opposite strand 250/250
(100 %)
0 diff
(100 %id)
AA621116   .d-u 1340 to 1582 244 to 2       243/244
(99 %)
0 diff
(100 %id)
AI914801 ovary, tumor, 5 pooled (see description) .d-u 1341 to 1572 231 to 1       231/233
(99 %)
3 diff
(98.8 %id)
FN170786 breast carcinoma .d-u 1342 to 1445 104 to 1     Submitted on the opposite strand 104/105
(99 %)
4 diff
(96.2 %id)
AA483364 Ewing's sarcoma .d-u 1347 to 1587 8 to 248       241/259
(93 %)
1 diff
(99.7 %id)
T29512 prostate gland .d-u 1351 to 1580 230 to 1       230/230
(100 %)
0 diff
(100 %id)
N74017 liver and spleen .d-u 1354 to 1572 219 to 1       219/219
(100 %)
0 diff
(100 %id)
T65292 whole brain .d-u 1359 to 1600 247 to 6       242/247
(97 %)
0 diff
(100 %id)
FN082241 breast carcinoma .d-u 1455 to 1570 1 to 114       114/114
(100 %)
4 diff
(96.5 %id)
BE928172 colon .e-u 1 to 294 303 to 9 Y36H P63S tiling clone,   295/303
(97 %)
0 diff
(100 %id)
DB161704 thymus .e-u 252 to 836 2 to 586   tiling clone, capped   585/585
(100 %)
3 diff
(99.5 %id)
BF377682 testis_normal .e-u 407 to 666 1 to 261       261/261
(100 %)
10 diff
(96.2 %id)
BE831704 marrow .f 1 to 404 409 to 7 Y29D tiling clone,   403/409
(98 %)
5 diff
(98.8 %id)
BI013787 lung_tumor .g-u 1 to 326 338 to 13 F3S W4R tiling clone,   326/368
(88 %)
0 diff
(100 %id)
DB171929 kidney, tumor tissue Gene RCOR1, variant not shown       capped      
DB347325 kidney, tumor tissue Gene RCOR1, variant not shown              
DW453997 Liver Gene RCOR1, variant not shown       AAA This clone was ignored    
DA511336 brain Gene RCOR1, variant not shown       capped Suspected internal deletion, this clone was ignored    
W85724 liver and spleen Gene RCOR1, variant not shown         This clone was ignored    
W85790 liver and spleen Gene RCOR1, variant not shown         This clone was ignored    
AA761341 germinal center B cell Gene RCOR1, variant not shown              
AI922671 adenocarcinoma, Pancreas Gene RCOR1, variant not shown              
BF061766 pooled germ cell tumors Gene RCOR1, variant not shown         Submitted on the opposite strand, submitted on the opposite strand    
BU159562 eye, retinoblastoma Gene RCOR1, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c-u, .d-u, .e-u, .f, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI