To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene RCHY1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
290 supporting clones for gene RCHY1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DB044826 testis .a 1 to 566 2 to 569   tiling clone, capped   568/568
(100 %)
2 diff
(99.7 %id)
BI601663 brain, hypothalamus .a 251 to 934 1 to 684       684/862
(79 %)
17 diff
(98.1 %id)
BC047393 Brain, hypothalamus .a 255 to 1710 1 to 1456 R142Q available from MGC, AAA   1456/1456
(100 %)
2 diff
(99.9 %id)
TI_45214719   .a 255 to 934 124 to 803       680/981
(69 %)
18 diff
(98.2 %id)
DB493401 hypothalamus .a 260 to 760 1 to 499       499/499
(100 %)
6 diff
(98.8 %id)
NM_015436.2   .a 267 to 4575 1 to 4309 exact RefSeq, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 4309/4309
(100 %)
0 diff
(100 %id)
AK091501 brain .a 284 to 4072 1 to 3791 exact tiling clone, available from FLJ,   3791/3791
(100 %)
6 diff
(99.9 %id)
AX747022   .a 284 to 4072 1 to 3791 exact     3791/3791
(100 %)
6 diff
(99.9 %id)
BF967416 brain, hypothalamus .a 295 to 994 1 to 699   fully sequenced,   699/699
(100 %)
16 diff
(97.8 %id)
CR598430 T cells (Jurkat cell line) Cot10-normalized .a 299 to 1662 1 to 1364 exact     1364/1364
(100 %)
0 diff
(100 %id)
AL558973 T cells from T cell leukemia .a 299 to 965 1 to 664   fully sequenced,   664/664
(100 %)
4 diff
(99.4 %id)
DA730206   .a 317 to 998 2 to 683   capped   682/682
(100 %)
0 diff
(100 %id)
TI_57216603   .a 336 to 1086 21 to 772       752/774
(97 %)
12 diff
(98.5 %id)
BI756231 brain .a 345 to 1086 1 to 742       742/744
(99 %)
1 diff
(99.9 %id)
DA079174 cerebellum .a 356 to 941 2 to 587   capped   586/586
(100 %)
0 diff
(100 %id)
AF305424   .a 365 to 1472 1 to 1107 exact     1107/1110
(99 %)
10 diff
(99.1 %id)
CR612839 HeLa cells Cot 25-normalized .a 367 to 1868 1 to 1502 exact     1502/1502
(100 %)
0 diff
(100 %id)
AL556403 placenta .a 368 to 1202 1 to 834 S11T G12V Q13K E14S R15E ...     834/834
(100 %)
5 diff
(99.5 %id)
DR000555 fetal brain .a 369 to 1084 1 to 717       717/717
(100 %)
8 diff
(98.9 %id)
GU937000   .a 372 to 1244 1 to 874 I68N Q69S H70T A71C Q72P ...     874/874
(100 %)
1 diff
(99.9 %id)
AF255666   .a 373 to 1893 1 to 1521 S11T Q13E tiling clone, AAA   1521/1521
(100 %)
3 diff
(99.9 %id)
CV804764 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 374 to 976 32 to 634       603/929
(64 %)
15 diff
(98.4 %id)
TI_45214152   .a 376 to 1099 122 to 845       724/846
(85 %)
8 diff
(99.1 %id)
DB229581 trachea .a 376 to 970 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
BI601424 brain, hypothalamus .a 377 to 1099 1 to 723       723/724
(99 %)
5 diff
(99.4 %id)
DA322369 hippocampus .a 381 to 959 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
TI_45208826   .a 382 to 1229 134 to 985 W197R P210Q C225L N226Y T230H ...     852/986
(86 %)
34 diff
(96.6 %id)
BI596920 brain, hypothalamus .a 385 to 1229 1 to 849 W197R P210Q C225L N226Y T230H ...     849/850
(99 %)
31 diff
(96.4 %id)
BU166379 melanotic melanoma, skin .a 385 to 1277 1 to 893 G237X Q250X     893/911
(98 %)
8 diff
(99.2 %id)
DA248555 brain .a 389 to 973 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
AB209072 brain .a 392 to 2109 1 to 1722 I220F tiling clone,   1722/1722
(100 %)
4 diff
(99.8 %id)
BG481510 choriocarcinoma, placenta .a 392 to 1237 1 to 852 K178T E179R G180R Y181L R182Q ...     852/875
(97 %)
22 diff
(97.5 %id)
BU177670 melanotic melanoma, skin .a 392 to 1240 1 to 852 G237X     852/871
(97 %)
10 diff
(98.9 %id)
CX760529 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .a 396 to 1114 1 to 719     Submitted on the opposite strand 719/719
(100 %)
1 diff
(99.9 %id)
DA415582 thalamus .a 397 to 1055 2 to 659   capped   658/658
(100 %)
1 diff
(99.9 %id)
DA540195 lung .a 397 to 974 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
AW963668   .a 398 to 1130 1 to 733       733/738
(99 %)
14 diff
(98.2 %id)
AF247041   .a 399 to 1184 1 to 786 exact     786/786
(100 %)
0 diff
(100 %id)
EL733971 mixed .a 399 to 1055 1 to 657       657/665
(98 %)
2 diff
(99.7 %id)
GQ250944   .a 399 to 1184 1 to 786 S11T Q13E     786/786
(100 %)
3 diff
(99.7 %id)
TI_1948155716   .a 399 to 622 133 to 356       224/252
(88 %)
6 diff
(97.7 %id)
TI_1948155880   .a 399 to 559 135 to 295   fully sequenced,   161/189
(85 %)
6 diff
(96.9 %id)
TI_1948156050   .a 399 to 519 135 to 255   fully sequenced,   121/149
(81 %)
6 diff
(96.0 %id)
CN483543 eye .a 410 to 1030 1 to 621       621/621
(100 %)
0 diff
(100 %id)
CX787716 human embryonic stem cells .a 412 to 1275 1 to 864       864/864
(100 %)
0 diff
(100 %id)
BE778550 eye, retinoblastoma .a 418 to 1045 1 to 640       636/1152
(55 %)
29 diff
(97.5 %id)
CN271775 embryonic stem cells, DMSO-treated H9 cellline .a 423 to 1153 8 to 738       731/738
(99 %)
6 diff
(99.2 %id)
BQ669477 epidermoid carcinoma, cell line, salivary gland .a 434 to 1320 1 to 902       902/904
(99 %)
33 diff
(96.4 %id)
TI_1948156051   .a 446 to 1183 861 to 121   fully sequenced,   740/860
(86 %)
5 diff
(99.5 %id)
BF128013 leiomyosarcoma cell line, uterus .a 461 to 1143 1 to 670       670/937
(71 %)
27 diff
(97.2 %id)
CR596363 Placenta Cot 25-normalized .a 487 to 1688 1 to 1202       1202/1202
(100 %)
0 diff
(100 %id)
AL554812 placenta, Placenta Cot 25-normalized .a 487 to 934 1 to 451   fully sequenced,   449/449
(100 %)
6 diff
(98.7 %id)
DB288794 uterus .a 510 to 1059 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DA403579 thalamus .a 514 to 1074 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
TI_1948155881   .a 529 to 1183 780 to 126   fully sequenced,   655/780
(83 %)
2 diff
(99.8 %id)
BU155481 bone marrow, from acute myelogenous leukemia .a 665 to 1452 1 to 795       795/806
(98 %)
16 diff
(98.1 %id)
BX284092 skin .a 684 to 1181 1 to 498       498/498
(100 %)
1 diff
(99.8 %id)
BG740908 skin .a 685 to 1543 1 to 857       857/859
(99 %)
8 diff
(99.1 %id)
BF670330 muscle (skeletal) .a 698 to 1420 1 to 717       717/875
(81 %)
27 diff
(97.0 %id)
DA227691 brain .a 703 to 1265 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
BG209409   .a 726 to 1426 1 to 701       701/785
(89 %)
43 diff
(94.6 %id)
BE383064 brain, neuroblastoma .a 798 to 1472 1 to 675       675/678
(99 %)
11 diff
(98.4 %id)
BG026196 Bone, osteosarcoma, cell line .a 799 to 1518 1 to 716       716/931
(76 %)
16 diff
(98.3 %id)
BG203599   .a 802 to 1572 1 to 766       766/768
(99 %)
22 diff
(97.2 %id)
BE708820 head_neck .a 816 to 1087 15 to 285       271/294
(92 %)
15 diff
(94.9 %id)
BG530143 embryonal carcinoma, testis .a 872 to 1569 1 to 698       698/699
(99 %)
12 diff
(98.3 %id)
AL577449 placenta, Placenta Cot 25-normalized .a 877 to 1688 819 to 1   fully sequenced,   819/819
(100 %)
54 diff
(93.5 %id)
AL558972 T cells from T cell leukemia .a 909 to 1662 754 to 1   fully sequenced,   754/754
(100 %)
10 diff
(98.7 %id)
TI_1948155717   .a 928 to 1183 380 to 125       256/283
(90 %)
0 diff
(100 %id)
BF967638 brain, hypothalamus .a 967 to 1669 704 to 1   fully sequenced,   704/704
(100 %)
6 diff
(99.2 %id)
H74123 liver and spleen .a 2444 to 2917 1 to 478       478/482
(99 %)
7 diff
(98.6 %id)
CB241669 Human Lung Epithelial cells, lung .a 3933 to 4584 672 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 654/654
(100 %)
6 diff
(99.1 %id)
BQ024871 placenta .a 3999 to 4683 705 to 19   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 687/687
(100 %)
9 diff
(98.7 %id)
DN919417   .a 4119 to 4584 466 to 1   tiling clone,   466/466
(100 %)
1 diff
(99.8 %id)
AW236209 myeloid cells, 18 pooled CML cases, BCR/ABLrearrangement positive, includes both chronic phase andmyeloid blast crisis, whole blood .a 4293 to 4683 391 to 1       391/391
(100 %)
0 diff
(100 %id)
H73931 liver and spleen .a 4477 to 4688 212 to 1   tiling clone,   212/212
(100 %)
0 diff
(100 %id)
NM_001009922.1   .b 1 to 4282 1 to 4282 exact RefSeq, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 4282/4282
(100 %)
0 diff
(100 %id)
BG703283 brain, hippocampus .b 12 to 548 1 to 536       536/536
(100 %)
6 diff
(98.9 %id)
DB449666 testis .b 16 to 484 1 to 469       469/469
(100 %)
7 diff
(98.6 %id)
DB480899 hippocampus .b 16 to 497 1 to 482       482/482
(100 %)
0 diff
(100 %id)
DA223247 brain .b 17 to 576 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA314546 hippocampus .b 17 to 579 2 to 564   tiling clone, capped   563/563
(100 %)
0 diff
(100 %id)
DA394128 thalamus .b 17 to 473 2 to 459   capped   458/458
(100 %)
1 diff
(99.8 %id)
DA797191 brain .b 17 to 576 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA502384 brain .b 19 to 482 2 to 465   capped   464/464
(100 %)
0 diff
(100 %id)
DB239384 trachea .b 19 to 589 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DB488919 hypothalamus .b 28 to 482 1 to 455       455/455
(100 %)
4 diff
(99.2 %id)
DA953579 Spleen .b 28 to 612 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DB180399 kidney, tumor tissue .b 81 to 641 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
AA370904 Prostate .b 99 to 373 1 to 274       274/274
(100 %)
1 diff
(99.7 %id)
DA754597   .b 100 to 582 2 to 483   capped   482/482
(100 %)
0 diff
(100 %id)
DB211777 trachea .b 104 to 628 2 to 526   capped   525/525
(100 %)
0 diff
(100 %id)
AA424427   .b 107 to 636 1 to 530       530/530
(100 %)
2 diff
(99.7 %id)
CB119489 Liver .b 107 to 639 1 to 533       533/533
(100 %)
0 diff
(100 %id)
R56517 whole brain .b 114 to 522 1 to 412       412/418
(98 %)
13 diff
(96.9 %id)
DB463089 hippocampus .b 116 to 544 1 to 429       429/429
(100 %)
0 diff
(100 %id)
DB479942 hippocampus .b 116 to 612 1 to 497       497/498
(99 %)
1 diff
(99.8 %id)
DB492097 hypothalamus .b 124 to 559 1 to 434       434/434
(100 %)
4 diff
(99.1 %id)
DB502422 hypothalamus .b 124 to 593 1 to 470       470/470
(100 %)
1 diff
(99.8 %id)
DB499497 hypothalamus .b 127 to 627 1 to 507       510/507
(100 %)
32 diff
(93.7 %id)
AA373712 lung .b 131 to 338 1 to 208       208/208
(100 %)
4 diff
(98.1 %id)
EL736422 mixed .b 133 to 644 1 to 512       512/603
(84 %)
1 diff
(99.9 %id)
GQ250945   .b 133 to 891 1 to 759 S11T Q13E     759/759
(100 %)
3 diff
(99.7 %id)
TI_1948156216   .b 133 to 298 140 to 305       166/194
(85 %)
6 diff
(97.0 %id)
TI_1948228533   .b 133 to 644 133 to 644       512/659
(77 %)
7 diff
(99.0 %id)
TI_1948228534   .b 133 to 639 132 to 638       507/536
(94 %)
6 diff
(98.9 %id)
TI_1948228822   .b 133 to 644 121 to 632       512/544
(94 %)
7 diff
(98.8 %id)
TI_1948228824   .b 133 to 644 638 to 127       512/639
(80 %)
1 diff
(99.9 %id)
TI_1948229138   .b 133 to 644 134 to 645       512/553
(92 %)
6 diff
(99.0 %id)
TI_1948229139   .b 133 to 622 127 to 616       490/518
(94 %)
6 diff
(98.9 %id)
TI_1948229441   .b 133 to 644 136 to 647       512/565
(90 %)
7 diff
(98.8 %id)
TI_1948229442   .b 133 to 644 131 to 642       512/549
(93 %)
7 diff
(98.8 %id)
AA092864   .b 137 to 343 1 to 207       207/218
(94 %)
3 diff
(98.7 %id)
AA214466   .b 141 to 300 1 to 158       158/158
(100 %)
3 diff
(98.2 %id)
DB455131 testis .b 144 to 612 1 to 470       470/470
(100 %)
1 diff
(99.8 %id)
BE891876 melanotic melanoma, skin .b 158 to 777 1 to 622       618/622
(99 %)
1 diff
(99.9 %id)
BE696259 colon .b 168 to 497 9 to 338       330/350
(94 %)
9 diff
(97.5 %id)
CB157985 Liver .b 182 to 597 1 to 415       415/415
(100 %)
1 diff
(99.8 %id)
N27035 melanocyte .b 205 to 560 1 to 357       357/357
(100 %)
2 diff
(99.5 %id)
BM698306 eye, fetal eyes .b 210 to 589 1 to 380       380/380
(100 %)
0 diff
(100 %id)
AA213494 germinal center B cell .b 211 to 534 1 to 327       327/351
(93 %)
3 diff
(99.2 %id)
TI_1948228823   .b 228 to 644 544 to 128       417/444
(93 %)
0 diff
(100 %id)
BI913695 brain .b 294 to 986 1 to 689       689/689
(100 %)
11 diff
(98.5 %id)
TI_57241316   .b 294 to 986 30 to 718       689/718
(95 %)
17 diff
(97.7 %id)
AA053216 colon, tumor .b 304 to 497 1 to 194       194/194
(100 %)
1 diff
(99.5 %id)
BP262622 small intestine .b 496 to 1078 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BC015464 Skin, melanotic melanoma. .b 537 to 1424 1 to 888   tiling clone, available from MGC, AAA   888/888
(100 %)
0 diff
(100 %id)
BE890349 melanotic melanoma, skin .b 558 to 1222 1 to 668   available from MGC,   668/887
(75 %)
9 diff
(99.0 %id)
W01424 lung .b 610 to 975 1 to 388   fully sequenced,   388/388
(100 %)
20 diff
(94.9 %id)
TI_159723013   .b 642 to 1431 883 to 95   AAA   789/1006
(78 %)
2 diff
(99.9 %id)
TI_151710036   .b 643 to 1424 880 to 99   AAA   782/1055
(74 %)
7 diff
(99.4 %id)
CA944823 Human Lung Epithelial cells, lung .b 647 to 1431 801 to 17   AAA   785/785
(100 %)
2 diff
(99.8 %id)
BU629062 cell lines, Chondrosarcoma .b 647 to 1424 796 to 20   AAA   777/777
(100 %)
2 diff
(99.8 %id)
DA106219 cerebellum .b 675 to 1236 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
BI087719 cervix .b 696 to 1426 1 to 741   AAA   723/741
(97 %)
19 diff
(97.5 %id)
AI096477 brain, glioblastoma (pooled) .b 697 to 1421 734 to 10       725/734
(98 %)
0 diff
(100 %id)
AI655307 pooled germ cell tumors .b 697 to 1419 747 to 25       723/747
(96 %)
1 diff
(99.9 %id)
AL578672 placenta .b 702 to 1575 878 to 1       878/878
(100 %)
5 diff
(99.5 %id)
BU742289 eye, fetal eye .b 712 to 1417 724 to 19   AAA   706/706
(100 %)
1 diff
(99.9 %id)
CV340043 breast .b 723 to 987 1 to 267       267/272
(98 %)
26 diff
(90.5 %id)
BI334338 cervical carcinoma cell line, cervix .b 742 to 1471 1 to 726       726/726
(100 %)
14 diff
(98.1 %id)
BG214118   .b 759 to 1397 1 to 639       639/661
(96 %)
2 diff
(99.7 %id)
BG181385   .b 764 to 1387 626 to 6     Submitted on the opposite strand 621/729
(85 %)
0 diff
(100 %id)
BQ016201 lung, Metastatic Chondrosarcoma .b 764 to 1431 686 to 17   AAA   670/677
(98 %)
2 diff
(99.8 %id)
AA524525 colon .b 765 to 1418 652 to 1       652/659
(98 %)
7 diff
(99.0 %id)
AF118087 Liver .b 776 to 1600 680 to 1504   AAA   825/1504
(54 %)
6 diff
(99.7 %id)
BE768659 prostate_tumor .b 782 to 917 136 to 1       136/136
(100 %)
0 diff
(100 %id)
CA308599 Alveolar Macrophage, lung .b 812 to 1424 632 to 20   AAA   613/613
(100 %)
5 diff
(99.2 %id)
BX390057   .b 822 to 1607 1 to 787       787/787
(100 %)
8 diff
(99.0 %id)
BX390058   .b 835 to 1565 21 to 743       723/783
(92 %)
31 diff
(96.1 %id)
N93724 lung .b 847 to 1424 602 to 24   AAA   579/579
(100 %)
12 diff
(98.0 %id)
H30832 eye, retina .b 848 to 1131 1 to 284       284/284
(100 %)
0 diff
(100 %id)
BF196678 brain, glioblastoma (pooled) .b 888 to 1417 530 to 1       530/530
(100 %)
0 diff
(100 %id)
AI767446 Kidney .b 898 to 1424 529 to 3       527/529
(99 %)
0 diff
(100 %id)
AA779880   .b 913 to 1424 528 to 17   AAA   512/512
(100 %)
1 diff
(99.9 %id)
FN140395 breast carcinoma .b 916 to 1013 1 to 99       99/99
(100 %)
1 diff
(99.0 %id)
AA700238 liver and spleen .b 919 to 1408 490 to 1       490/490
(100 %)
3 diff
(99.4 %id)
AI423080 brain, glioblastoma (pooled) .b 925 to 1421 522 to 26   AAA   497/497
(100 %)
0 diff
(100 %id)
BF940770 brain, glioblastoma (pooled) .b 927 to 1417 491 to 1       491/491
(100 %)
0 diff
(100 %id)
CA425666 cell lines, Chondrosarcoma .b 928 to 1338 642 to 229   AAA   414/624
(66 %)
0 diff
(100 %id)
BE768658 prostate_tumor .b 932 to 1381 449 to 2       448/449
(99 %)
0 diff
(100 %id)
AI802641 colon, colonic mucosa from 5 ulcerative colitispatients .b 938 to 1421 486 to 3       484/486
(99 %)
0 diff
(100 %id)
AI161097 uterus .b 941 to 1423 486 to 4       483/486
(99 %)
0 diff
(100 %id)
AI161098 uterus .b 941 to 1423 486 to 4       483/486
(99 %)
0 diff
(100 %id)
N70827 lung .b 946 to 1432 491 to 1   fully sequenced,   491/491
(100 %)
7 diff
(98.6 %id)
AI378296   .b 950 to 1424 484 to 10       475/484
(98 %)
0 diff
(100 %id)
AA767091 germinal center B cell .b 952 to 1417 483 to 19   AAA   465/465
(100 %)
4 diff
(99.2 %id)
EC471463 Prostate .b 953 to 1047 1 to 94       94/94
(100 %)
3 diff
(96.9 %id)
AW295957   .b 955 to 1424 488 to 19   AAA   470/474
(99 %)
1 diff
(99.8 %id)
FN148444 breast carcinoma .b 956 to 1051 1 to 98       98/98
(100 %)
4 diff
(96.0 %id)
DB570625 hypothalamus .b 958 to 1432 1 to 477     Submitted on the opposite strand 477/478
(99 %)
3 diff
(99.4 %id)
DB573638 hypothalamus .b 961 to 1421 1 to 461     Submitted on the opposite strand 461/465
(99 %)
2 diff
(99.6 %id)
AA214570 germinal center B cell .b 963 to 1427 479 to 14   AAA   466/467
(99 %)
3 diff
(99.4 %id)
DB564488 hypothalamus .b 971 to 1421 1 to 451     Submitted on the opposite strand 451/451
(100 %)
0 diff
(100 %id)
BG210937   .b 973 to 1234 266 to 6     Submitted on the opposite strand 261/266
(98 %)
0 diff
(100 %id)
AW392932 stomach .b 978 to 1583 607 to 3       605/607
(99 %)
0 diff
(100 %id)
BG337949 leiomyosarcoma cell line, uterus .b 978 to 1424 1 to 441   AAA   441/441
(100 %)
8 diff
(98.2 %id)
BF196169 carcinoid, lung .b 979 to 1171 193 to 1       193/193
(100 %)
2 diff
(99.0 %id)
AI161096 uterus .b 987 to 1423 440 to 4       437/440
(99 %)
0 diff
(100 %id)
AI493820 Kidney .b 987 to 1424 441 to 4       438/441
(99 %)
0 diff
(100 %id)
AI433870 Kidney .b 987 to 1424 439 to 2       438/439
(99 %)
0 diff
(100 %id)
AI261379 Kidney .b 990 to 1434 448 to 2       447/448
(99 %)
0 diff
(100 %id)
DB514853 testis .b 991 to 1424 1 to 434     Submitted on the opposite strand 434/435
(99 %)
12 diff
(97.3 %id)
DB563043 hypothalamus .b 994 to 1421 1 to 427     Submitted on the opposite strand 427/431
(99 %)
5 diff
(98.9 %id)
N58942 multiple sclerosis lesions .b 994 to 1424 436 to 2       435/436
(99 %)
0 diff
(100 %id)
DB560278 hypothalamus .b 996 to 1424 1 to 429     Submitted on the opposite strand 429/435
(98 %)
6 diff
(98.7 %id)
AA446867   .b 1006 to 1419 429 to 16       414/429
(96 %)
0 diff
(100 %id)
AA831228 germinal center B cell .b 1016 to 1423 434 to 27   AAA   408/408
(100 %)
0 diff
(100 %id)
AA928591 pooled germ cell tumors .b 1016 to 1419 405 to 1       405/405
(100 %)
10 diff
(97.6 %id)
AW291818   .b 1030 to 1419 411 to 22       390/411
(94 %)
0 diff
(100 %id)
AA053464 colon, tumor .b 1037 to 1430 395 to 1       395/396
(99 %)
1 diff
(99.8 %id)
BF590396 Kidney .b 1039 to 1419 384 to 3       382/389
(98 %)
0 diff
(100 %id)
FN161516 breast carcinoma .b 1042 to 1139 104 to 8     Submitted on the opposite strand 97/104
(93 %)
0 diff
(100 %id)
AI290855 carcinoid, lung .b 1044 to 1430 387 to 1       387/388
(99 %)
5 diff
(98.8 %id)
DB513916 testis .b 1047 to 1424 1 to 378     Submitted on the opposite strand 378/380
(99 %)
4 diff
(99.0 %id)
AA424323.
matches multiple genes
  .b 1049 to 1434 391 to 4     also hits gene EBF3 388/391
(99 %)
0 diff
(100 %id)
AA938436 2 pooled tumors (clear cell type), Kidney .b 1053 to 1421 371 to 3       369/371
(99 %)
0 diff
(100 %id)
AW128845 ovary, tumor, 5 pooled (see description) .b 1072 to 1423 367 to 16   AAA   352/352
(100 %)
0 diff
(100 %id)
BF431152 Kidney .b 1073 to 1419 365 to 18       348/365
(95 %)
0 diff
(100 %id)
BG183939   .b 1084 to 1377 295 to 3     Submitted on the opposite strand 293/295
(99 %)
0 diff
(100 %id)
DB199009 trachea .b 1085 to 1570 2 to 487   capped   486/486
(100 %)
0 diff
(100 %id)
DN919456   .b 1088 to 1294 207 to 1       207/207
(100 %)
5 diff
(97.6 %id)
AI150448   .b 1094 to 1430 341 to 3       339/341
(99 %)
0 diff
(100 %id)
AI131015 heart .b 1122 to 1602 481 to 1       481/481
(100 %)
1 diff
(99.8 %id)
AI015243   .b 1128 to 1424 302 to 5       298/302
(98 %)
0 diff
(100 %id)
AA886467 carcinoid, lung .b 1129 to 1423 310 to 16   AAA   295/295
(100 %)
0 diff
(100 %id)
AI524779 serous papillary carcinoma, high grade, 2pooled tumors, uterus .b 1131 to 1429 317 to 20   AAA   298/298
(100 %)
3 diff
(99.0 %id)
BU570965 brain, glioblastoma .b 1135 to 1602 1 to 470       470/507
(92 %)
5 diff
(99.1 %id)
DB549708 hippocampus .b 1138 to 1605 1 to 470     Submitted on the opposite strand 470/470
(100 %)
1 diff
(99.8 %id)
DB548671 hippocampus .b 1144 to 1605 1 to 464     Submitted on the opposite strand 464/464
(100 %)
1 diff
(99.8 %id)
AA719077 pineal gland .b 1144 to 1602 461 to 1       461/461
(100 %)
2 diff
(99.6 %id)
AA978000 2 pooled tumors (clear cell type), Kidney .b 1163 to 1421 266 to 8       259/266
(97 %)
0 diff
(100 %id)
AI300868 2 pooled tumors (clear cell type), Kidney .b 1163 to 1606 450 to 5       446/450
(99 %)
0 diff
(100 %id)
DB558281 hypothalamus .b 1165 to 1605 1 to 441     Submitted on the opposite strand 441/441
(100 %)
3 diff
(99.4 %id)
DB528848 hippocampus .b 1179 to 1605 1 to 430     Submitted on the opposite strand 430/430
(100 %)
2 diff
(99.6 %id)
AA214370   .b 1203 to 1605 406 to 1       406/406
(100 %)
3 diff
(99.3 %id)
AA603846   .b 1211 to 1606 405 to 8       398/405
(98 %)
0 diff
(100 %id)
AA548670 normal prostate, Prostate .b 1212 to 1605 396 to 1       396/396
(100 %)
2 diff
(99.5 %id)
AI815731 brain, frontal lobe .b 1214 to 1429 17 to 232   AAA   216/232
(93 %)
6 diff
(97.5 %id)
AA810414 germinal center B cell .b 1216 to 1424 228 to 20   AAA   209/209
(100 %)
1 diff
(99.6 %id)
AI193812 lung .b 1226 to 1605 380 to 1       380/380
(100 %)
0 diff
(100 %id)
C04311 heart .b 1246 to 1606 1 to 363       363/365
(99 %)
3 diff
(99.2 %id)
C05609 heart .b 1246 to 1543 1 to 300       300/300
(100 %)
2 diff
(99.4 %id)
AA782228 parathyroid gland, parathyroid tumor .b 1256 to 1434 182 to 4       179/182
(98 %)
0 diff
(100 %id)
AA931502 Kidney .b 1265 to 1604 341 to 1       341/341
(100 %)
2 diff
(99.5 %id)
AI122912 pooled .b 1290 to 1606 326 to 8       319/326
(97 %)
0 diff
(100 %id)
DA187781 amygdala .b 1303 to 1843 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
BG203116   .b 1317 to 1590 345 to 69     Submitted on the opposite strand 277/345
(80 %)
0 diff
(100 %id)
DB554276 hypothalamus .b 1335 to 1758 1 to 416     Submitted on the opposite strand 416/416
(100 %)
24 diff
(94.3 %id)
AI811906 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .b 1341 to 1419 90 to 12       79/90
(87 %)
0 diff
(100 %id)
DA710451   .b 1349 to 1906 2 to 561   tiling clone, capped   560/560
(100 %)
2 diff
(99.7 %id)
AI735478 aorta .b 1369 to 1604 243 to 8       236/243
(97 %)
0 diff
(100 %id)
AA719088 pineal gland .b 1398 to 1602 207 to 1       207/212
(97 %)
2 diff
(99.1 %id)
AA370903 Prostate .b 1407 to 1600 194 to 1       194/194
(100 %)
0 diff
(100 %id)
BG195855   .b 1408 to 1590 194 to 10     Submitted on the opposite strand 185/194
(95 %)
0 diff
(100 %id)
BG388791 embryonal carcinoma, cell line, testis .b 1456 to 2220 1 to 755       755/857
(88 %)
19 diff
(97.8 %id)
BX487709   .b 1702 to 2284 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DA130523 alzheimer cortex .b 1742 to 2307 2 to 567   tiling clone, capped   566/566
(100 %)
0 diff
(100 %id)
DA506355 brain .b 1802 to 2366 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
BG289038 bladder, transitional cell papilloma, cell line .b 1846 to 2531 1 to 681       681/682
(99 %)
7 diff
(99.0 %id)
AA324462 brain, cerebellum .b 1869 to 2165 1 to 297       297/297
(100 %)
0 diff
(100 %id)
BG256146 adenocarcinoma, cell line, Prostate .b 1921 to 2594 1 to 673       673/955
(70 %)
19 diff
(98.1 %id)
DA032826   .b 1977 to 2364 2 to 389   capped   388/391
(99 %)
2 diff
(99.5 %id)
DA998406   .b 1991 to 2551 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
AW895678 nervous_normal .b 2205 to 2836 11 to 641       631/641
(98 %)
12 diff
(98.2 %id)
R94241 liver and spleen .b 2221 to 2624 1 to 412       412/425
(96 %)
10 diff
(97.7 %id)
CV340045 breast .b 2248 to 2538 292 to 1     Submitted on the opposite strand 292/292
(100 %)
7 diff
(97.7 %id)
DA166519 amygdala .b 2266 to 2722 2 to 461   tiling clone, capped   460/469
(98 %)
4 diff
(99.2 %id)
BG563791 Liver .b 2423 to 3092 1 to 668   tiling clone,   668/669
(99 %)
7 diff
(99.0 %id)
BF695201 muscle (skeletal) .b 2974 to 3589 1 to 628   tiling clone,   628/849
(73 %)
28 diff
(96.8 %id)
H21583 breast .b 3177 to 3535 1 to 363       363/363
(100 %)
4 diff
(98.9 %id)
DB315930 brain .b 3234 to 3779 547 to 1   tiling clone,   547/547
(100 %)
1 diff
(99.9 %id)
BU933598 mixed (pool of 40 RNAs) .b 3310 to 4102 1 to 804   tiling clone,   804/804
(100 %)
19 diff
(97.7 %id)
DN919418   .b 3339 to 3938 15 to 610       596/610
(97 %)
6 diff
(99.1 %id)
BX104062 placenta .b 3433 to 4175 1 to 748       748/749
(99 %)
11 diff
(98.6 %id)
R70999 placenta .b 3450 to 3832 1 to 382       382/384
(99 %)
12 diff
(96.9 %id)
AW978462   .b 3535 to 4250 720 to 1     Submitted on the opposite strand 720/720
(100 %)
8 diff
(98.9 %id)
BQ025410 placenta .b 3604 to 4251 667 to 16   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 652/652
(100 %)
4 diff
(99.4 %id)
BQ441486 testis .b 3685 to 4251 1 to 573       573/838
(68 %)
9 diff
(99.0 %id)
AA551137 Schwannoma tumor .b 3706 to 4254 555 to 3       553/555
(99 %)
0 diff
(100 %id)
DB295828   .b 3714 to 4251 540 to 1       540/542
(99 %)
5 diff
(99.1 %id)
AA830646 germinal center B cell .b 3774 to 4254 490 to 7   tiling clone,   484/491
(98 %)
0 diff
(100 %id)
D62810   .b 3840 to 4134 1 to 295       295/299
(98 %)
4 diff
(98.7 %id)
AI718413 aorta .b 3843 to 4248 406 to 1   tiling clone,   406/406
(100 %)
0 diff
(100 %id)
D62084   .b 3861 to 4134 1 to 272       272/275
(98 %)
8 diff
(97.1 %id)
AA932685 pooled germ cell tumors .b 3861 to 4253 397 to 1       397/397
(100 %)
4 diff
(99.0 %id)
BQ022741 placenta .b 3941 to 4251 330 to 16   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 315/315
(100 %)
6 diff
(98.1 %id)
R70948 placenta .b 3984 to 4155 181 to 1       181/183
(98 %)
9 diff
(95.1 %id)
AW612850 colon, moderately-differentiated adenocarcinoma .b 4000 to 4251 256 to 1       256/256
(100 %)
3 diff
(98.9 %id)
AA885359 pooled .b 4029 to 4251 237 to 11   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 227/227
(100 %)
4 diff
(98.3 %id)
AL120684 melanoma (MeWo cell line) .b 4038 to 4251 1 to 214   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 214/214
(100 %)
0 diff
(100 %id)
EC483483 Prostate .b 4144 to 4245 1 to 102       102/102
(100 %)
0 diff
(100 %id)
DA197338 brain .c 1 to 549 2 to 550   tiling clone, capped   549/549
(100 %)
0 diff
(100 %id)
BQ959587 leiomyosarcoma, uterus .c 127 to 995 1 to 876 G215S C218M K219* tiling clone,   876/893
(98 %)
24 diff
(97.4 %id)
AK308754 amygdala .d 1 to 1732 1 to 1732 exact tiling clone,   1732/1732
(100 %)
1 diff
(100.0 %id)
DC317246 amygdala .d 1 to 558 1 to 558       558/558
(100 %)
0 diff
(100 %id)
NM_001008925.1   .e 1 to 4307 1 to 4307 exact RefSeq, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 4307/4307
(100 %)
0 diff
(100 %id)
DA095144 cerebellum .e 90 to 668 2 to 583   tiling clone, capped   582/584
(99 %)
4 diff
(99.4 %id)
DN999705   .e 112 to 654 1 to 537       537/537
(100 %)
7 diff
(98.7 %id)
DA418362 thalamus .e 123 to 663 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
GQ250946   .e 133 to 672 1 to 540   tiling clone,   540/540
(100 %)
3 diff
(99.5 %id)
BM728613 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .e 157 to 734 1 to 579       579/579
(100 %)
3 diff
(99.5 %id)
BE875403 large cell carcinoma, undifferentiated, lung .e 177 to 841 1 to 660       660/663
(99 %)
9 diff
(98.7 %id)
CF597260 ovary .e 418 to 1164 1 to 752   tiling clone,   752/756
(99 %)
12 diff
(98.5 %id)
BP314571 mammary gland .f 1 to 581 2 to 582 exact tiling clone,   582/582
(100 %)
0 diff
(100 %id)
AY888047   .g 1 to 1300 1 to 1300 exact tiling clone, AAA   1300/1300
(100 %)
0 diff
(100 %id)
AA443416   .g 1 to 347 1 to 347       347/347
(100 %)
4 diff
(98.9 %id)
AA447382   .g 956 to 1317 368 to 5       364/368
(98 %)
0 diff
(100 %id)
BQ429858 bone marrow, from acute myelogenous leukemia .h 1 to 606 1 to 606 exact tiling clone,   677/807
(83 %)
23 diff
(97.2 %id)
BI462220 testis .i 1 to 853 1 to 861 N139T V140C S141V R142P Q143T ... tiling clone, available from MGC,   861/861
(100 %)
22 diff
(97.5 %id)
BC031057 testis .i 6 to 2452 1 to 2447 exact tiling clone, available from MGC, AAA   2447/2447
(100 %)
6 diff
(99.8 %id)
DA958807 Spleen .i 130 to 688 2 to 560 exact capped   559/559
(100 %)
0 diff
(100 %id)
AV749113 Pituitary .i 996 to 1538 1 to 537   tiling clone,   537/544
(98 %)
9 diff
(98.4 %id)
AK308848 brain .j 1 to 1164 1 to 1164 exact tiling clone,   1164/1164
(100 %)
0 diff
(100 %id)
DC322081 brain .j 1 to 668 1 to 669       669/669
(100 %)
1 diff
(99.9 %id)
DB448762 testis .k 1 to 436 1 to 436   tiling clone,   436/436
(100 %)
0 diff
(100 %id)
BF102905 adenocarcinoma, Prostate .k 91 to 761 1 to 665 L22W E23R D24T I25F H26T ... tiling clone,   665/792
(83 %)
17 diff
(97.9 %id)
BX459245 placenta .l 1 to 1069 1 to 1059 K122X tiling clone,   1059/1075
(98 %)
14 diff
(98.7 %id)
BX412505 placenta .l 1099 to 1703 634 to 34   tiling clone,   601/639
(94 %)
0 diff
(100 %id)
BG703058 brain, hippocampus .m 1 to 728 6 to 733 exact tiling clone,   728/734
(99 %)
7 diff
(99.1 %id)
DA215258 brain .n 1 to 530 2 to 531 exact tiling clone, capped   530/530
(100 %)
0 diff
(100 %id)
AK309555   .n 126 to 1122 1 to 997   tiling clone,   997/997
(100 %)
1 diff
(99.9 %id)
DC361056   .n 126 to 689 1 to 565       565/565
(100 %)
2 diff
(99.7 %id)
AL712040 human skeletal muscle .o-u 1 to 486 1 to 486 T81A tiling clone,   486/486
(100 %)
2 diff
(99.6 %id)
AL050144 uterus Gene RCHY1, variant not shown       available from DKFZ, AAA Suspected internal deletion, this clone was ignored    
AV694093 hepatocellular carcinoma Gene RCHY1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI