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Gene RBPJTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
637 representative clones for gene RBPJ back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
L07875   .a 1 to 403 1 to 401   tiling clone,   401/401
(100 %)
3 diff
(99.3 %id)
NM_005349.2   .a 25 to 2412 1 to 2388   RefSeq,   2388/2388
(100 %)
0 diff
(100 %id)
BE513818 Burkitt lymphoma, lymph .a 115 to 774 1 to 657       657/690
(95 %)
8 diff
(98.9 %id)
BE269949 Burkitt lymphoma, lymph .a 116 to 800 1 to 684       684/716
(95 %)
15 diff
(98.0 %id)
BI093196 cervix .a 124 to 903 1 to 785       785/785
(100 %)
8 diff
(99.0 %id)
DA060337 cerebellum .a 140 to 689 2 to 553   capped   550/552
(99 %)
2 diff
(99.7 %id)
DA594592 lung .a 140 to 691 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA967154 stomach .a 140 to 718 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
BE257118 eye, retinoblastoma .a 145 to 735 1 to 591       591/595
(99 %)
2 diff
(99.7 %id)
BE253285 eye, retinoblastoma .a 146 to 806 1 to 660       660/662
(99 %)
19 diff
(97.2 %id)
DA613259   .a 154 to 635 2 to 483   capped   482/482
(100 %)
0 diff
(100 %id)
CN371674 embryonic stem cells, DMSO-treated H9 cellline .a 166 to 809 1 to 646       646/646
(100 %)
2 diff
(99.7 %id)
CN371670 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .a 205 to 860 1 to 656       656/656
(100 %)
1 diff
(99.9 %id)
CN371669 embryonic stem cells, cell lines H1, H7, andH9 .a 213 to 803 1 to 590   tiling clone,   590/590
(100 %)
4 diff
(99.4 %id)
DC407049 thymus .a 229 to 792 1 to 565       565/565
(100 %)
2 diff
(99.7 %id)
AK311419   .a 242 to 1101 1 to 860   tiling clone,   860/860
(100 %)
1 diff
(99.9 %id)
DA695434   .a 243 to 803 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
BQ942635 large cell carcinoma, lung .a 271 to 1222 1 to 955   tiling clone,   953/955
(99 %)
16 diff
(98.4 %id)
BI604083 brain, hypothalamus .a 296 to 988 6 to 699       694/699
(99 %)
9 diff
(98.8 %id)
BI597820 brain, hypothalamus .a 296 to 865 6 to 575       570/575
(99 %)
8 diff
(98.7 %id)
BI600065 brain, hypothalamus .a 296 to 1040 6 to 748       743/748
(99 %)
10 diff
(98.7 %id)
L07874   .b 1 to 337 1 to 338   tiling clone,   338/338
(100 %)
2 diff
(99.5 %id)
CX754811 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .b 78 to 813 1 to 727   tiling clone, Submitted on the opposite strand 727/846
(85 %)
11 diff
(98.7 %id)
L07872   .b 117 to 1696 1 to 1580 S7L M140I L141F G240V V248C ... tiling clone,   1580/1580
(100 %)
12 diff
(99.3 %id)
DC380464 placenta .c 1 to 506 1 to 508   tiling clone,   508/508
(100 %)
2 diff
(99.7 %id)
DC361185   .c 2 to 585 1 to 585       585/585
(100 %)
1 diff
(99.9 %id)
DC383382 Prostate .c 2 to 541 1 to 540       540/540
(100 %)
2 diff
(99.7 %id)
BJ995268 hepatoblastoma .c 4 to 495 1 to 492       492/492
(100 %)
2 diff
(99.6 %id)
DC329571 corpus callosum .c 11 to 583 1 to 573       573/575
(99 %)
2 diff
(99.7 %id)
DC304996 cerebellum .c 13 to 581 1 to 569       569/569
(100 %)
2 diff
(99.7 %id)
DC405686 thymus .c 13 to 583 1 to 573       573/574
(99 %)
4 diff
(99.4 %id)
AL519191 brain, neuroblastoma, neuroblastoma cells .c 18 to 887 1 to 870       870/870
(100 %)
22 diff
(97.5 %id)
BQ216033 embryonal carcinoma, cell line, testis .c 21 to 879 1 to 864       862/864
(99 %)
8 diff
(99.1 %id)
NM_015874.3   .c 21 to 2336 1 to 2316 exact RefSeq,   2316/2316
(100 %)
0 diff
(100 %id)
BM472788 melanotic melanoma, skin .c 22 to 711 28 to 726       699/984
(71 %)
19 diff
(98.1 %id)
DA869434 Prostate .c 25 to 600 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA076806 cerebellum .c 26 to 556 2 to 536   capped   535/535
(100 %)
6 diff
(98.9 %id)
AL516254 brain, neuroblastoma, neuroblastoma cells .c 30 to 894 1 to 863       863/863
(100 %)
3 diff
(99.7 %id)
BI827542 brain, medulla .c 33 to 797 1 to 768       768/769
(99 %)
14 diff
(98.2 %id)
TI_57172026   .c 33 to 797 31 to 798       768/799
(96 %)
18 diff
(97.8 %id)
BF793102 adrenal cortex carcinoma, cell line, adrenal gland .c 34 to 813 1 to 771       771/943
(81 %)
22 diff
(97.7 %id)
BX383355   .c 63 to 1028 1 to 964       964/964
(100 %)
3 diff
(99.7 %id)
CA392867 eye, RPE/choroid .c 73 to 391 1 to 319       319/319
(100 %)
1 diff
(99.7 %id)
AW239382 lung, cell line .c 83 to 718 1 to 636   tiling clone,   636/636
(100 %)
12 diff
(98.2 %id)
BE791029 lung, small cell carcinoma .c 126 to 743 1 to 617       617/617
(100 %)
5 diff
(99.2 %id)
AW885456 ovary .c 170 to 408 255 to 17       239/255
(93 %)
9 diff
(96.5 %id)
CD706049 normal nasopharynx .c 191 to 688 24 to 520       497/520
(95 %)
8 diff
(98.5 %id)
DB480007 hippocampus .c 191 to 688 1 to 499       499/499
(100 %)
7 diff
(98.6 %id)
DW436088 Liver .c 193 to 427 19 to 253       235/253
(92 %)
7 diff
(97.3 %id)
AL702631 human skeletal muscle .c 194 to 752 5 to 563       559/563
(99 %)
6 diff
(99.0 %id)
DW422111 Liver .c 194 to 423 14 to 243   AAA   230/243
(94 %)
6 diff
(97.6 %id)
AL597064   .c 197 to 700 1 to 506       506/506
(100 %)
4 diff
(99.3 %id)
DB448894 testis .c 198 to 623 1 to 426       426/426
(100 %)
4 diff
(99.1 %id)
AL599175   .c 199 to 770 1 to 574       574/574
(100 %)
2 diff
(99.7 %id)
DA495521 brain .c 199 to 681 2 to 484   capped   483/487
(99 %)
2 diff
(99.6 %id)
BF215462 brain, glioblastoma .c 200 to 857 1 to 661       661/895
(73 %)
28 diff
(96.9 %id)
AL602969 human skeletal muscle .c 201 to 799 1 to 599       599/599
(100 %)
1 diff
(99.9 %id)
BG614689 embryonal carcinoma, testis .c 201 to 970 1 to 775       775/799
(96 %)
25 diff
(96.9 %id)
DA250999 caudate nucleus .c 202 to 778 2 to 578   capped   577/577
(100 %)
1 diff
(99.9 %id)
DA569250 whole embryo, mainly head .c 202 to 973 2 to 780   capped   779/783
(99 %)
14 diff
(98.3 %id)
CB958654 Pooled-Glandular .c 206 to 967 1 to 764       762/780
(97 %)
9 diff
(98.9 %id)
BF241388 bone marrow, from acute myelogenous leukemia .c 209 to 858 1 to 641       639/743
(86 %)
29 diff
(96.1 %id)
BX488567   .c 210 to 867 1 to 657       657/657
(100 %)
2 diff
(99.7 %id)
DB106189 thymus .c 210 to 760 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
DB106138 thymus .c 211 to 788 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
AK302230 testis .c 212 to 1728 1 to 1517 exact     1517/1517
(100 %)
0 diff
(100 %id)
DA062189 cerebellum .c 212 to 780 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DB500338 hypothalamus .c 212 to 700 1 to 489       489/489
(100 %)
7 diff
(98.6 %id)
DA568229 whole embryo, mainly head .c 212 to 965 2 to 762   capped   761/879
(86 %)
10 diff
(98.9 %id)
DC398658 testis .c 212 to 760 1 to 549       549/549
(100 %)
0 diff
(100 %id)
DB109318 thymus .c 212 to 793 2 to 585   capped   584/584
(100 %)
2 diff
(99.7 %id)
AA332410 Embryo, 8 weeks .c 213 to 534 1 to 323       323/323
(100 %)
1 diff
(99.7 %id)
CA391222 eye, RPE/choroid .c 213 to 711 1 to 499       499/499
(100 %)
0 diff
(100 %id)
DA428218 colon .c 214 to 776 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DB456683 testis .c 215 to 709 1 to 495       495/495
(100 %)
2 diff
(99.6 %id)
DA605407   .c 215 to 686 2 to 473   capped   472/472
(100 %)
1 diff
(99.8 %id)
CR624016 adult brain .c 218 to 1834 1 to 1617 exact     1617/1617
(100 %)
0 diff
(100 %id)
AL532999 adult brain, brain .c 218 to 1056 1 to 839   fully sequenced,   839/839
(100 %)
1 diff
(99.9 %id)
BC053568 Peripheral Nervous System, sciatic nerve .c 223 to 1864 1 to 1644 E72K Q73N M74K E75W R76N ... tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 1644/1644
(100 %)
2 diff
(99.9 %id)
BQ933006 sciatic nerve .c 226 to 1147 1 to 924   available from MGC,   924/925
(99 %)
15 diff
(98.4 %id)
T67576 Liver .c 232 to 544 5 to 322       318/435
(73 %)
9 diff
(98.0 %id)
ES308002 beard hair, skin .c 236 to 435 1 to 200       200/200
(100 %)
0 diff
(100 %id)
CB269259 adipose .c 241 to 649 1 to 410       410/410
(100 %)
2 diff
(99.6 %id)
AL519190 brain, neuroblastoma, neuroblastoma cells .c 920 to 1587 925 to 258       668/925
(72 %)
24 diff
(97.5 %id)
AL516253 brain, neuroblastoma, neuroblastoma cells .c 934 to 1820 895 to 9       887/895
(99 %)
3 diff
(99.7 %id)
AL564959 adult brain, brain .c 1026 to 1834 810 to 1   fully sequenced,   810/810
(100 %)
5 diff
(99.4 %id)
BX383354   .c 1097 to 1834 735 to 1       735/865
(84 %)
22 diff
(97.5 %id)
DB354716 whole embryo, mainly head .c 1265 to 1740 476 to 1       476/549
(86 %)
1 diff
(99.9 %id)
T67414 Liver .c 1346 to 1865 532 to 5       528/543
(97 %)
1 diff
(99.9 %id)
BJ995269 hepatoblastoma .c 1411 to 1832 422 to 1       422/422
(100 %)
0 diff
(100 %id)
DB355863 whole embryo, mainly head .c 1415 to 1864 451 to 1       451/508
(88 %)
4 diff
(99.3 %id)
AL513760 placenta .d 1 to 918 1 to 919   tiling clone,   919/1015
(90 %)
6 diff
(99.5 %id)
AA101350 brain, neuroepithelial cells .d 267 to 578 1 to 315   tiling clone,   315/392
(80 %)
11 diff
(97.2 %id)
AA101254 brain, neuroepithelial cells .d 267 to 641 1 to 377       377/382
(98 %)
7 diff
(98.2 %id)
TI_1948233694   .d 908 to 1631 847 to 123   tiling clone,   725/1284
(56 %)
11 diff
(99.2 %id)
AL513759 placenta .d 909 to 1834 926 to 1   tiling clone,   926/1025
(90 %)
10 diff
(99.1 %id)
BF371016 prostate_normal .d 919 to 1119 155 to 355       201/355
(56 %)
6 diff
(98.4 %id)
TI_1948234502   .d 919 to 1631 843 to 125       719/1357
(52 %)
21 diff
(98.5 %id)
AW885470 ovary .d 948 to 1260 7 to 319       313/324
(96 %)
12 diff
(96.3 %id)
CX753529 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass .d 1003 to 1664 1 to 661       661/864
(76 %)
63 diff
(92.8 %id)
AV726498 hypothalamus .d 1016 to 1689 1 to 672       672/768
(87 %)
18 diff
(97.7 %id)
AW801962 uterus .d 1025 to 1339 1 to 315       315/315
(100 %)
1 diff
(99.7 %id)
CN480367 Knee, Osteoarthritic Cartilage .d 1041 to 1685 659 to 16   AAA   644/644
(100 %)
2 diff
(99.7 %id)
AI953614 Kidney .d 1046 to 1825 781 to 2       780/793
(98 %)
22 diff
(97.3 %id)
AW090508 brain, tumor, 5 pooled (see description) .d 1046 to 1685 642 to 1       642/660
(97 %)
20 diff
(97.0 %id)
TI_1948233961   .d 1050 to 1631 707 to 124       584/1313
(44 %)
13 diff
(99.1 %id)
AI962712 pooled germ cell tumors .d 1055 to 1817 759 to 1       759/764
(99 %)
15 diff
(98.1 %id)
AA232981 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .d 1057 to 1212 1 to 159       159/159
(100 %)
11 diff
(93.1 %id)
BM717256 eye, lens .d 1062 to 1243 1 to 182   fully sequenced,   182/182
(100 %)
0 diff
(100 %id)
AA641661 invasive tumor (cell line), Prostate .d 1073 to 1684 611 to 1       611/611
(100 %)
8 diff
(98.7 %id)
AI401150 B-cell, chronic lymphotic leukemia .d 1087 to 1809 725 to 1       725/725
(100 %)
12 diff
(98.4 %id)
AW902296 nervous_normal .d 1089 to 1462 374 to 4       371/374
(99 %)
1 diff
(99.8 %id)
BM999365 Fibrosarcoma .d 1114 to 1827 714 to 1       714/714
(100 %)
0 diff
(100 %id)
AI627646 Kidney .d 1117 to 1825 707 to 1       707/707
(100 %)
5 diff
(99.3 %id)
BG292364 bladder, transitional cell papilloma, cell line .d 1119 to 1674 1 to 560       560/830
(67 %)
12 diff
(98.6 %id)
BF083853 colon .d 1127 to 1453 328 to 4       325/330
(98 %)
2 diff
(99.4 %id)
BE698545 uterus_tumor .d 1137 to 1385 251 to 1       251/251
(100 %)
8 diff
(96.9 %id)
BE939908 uterus_tumor .d 1137 to 1380 248 to 2       247/248
(99 %)
4 diff
(98.4 %id)
BE939917 uterus_tumor .d 1137 to 1398 279 to 19       261/279
(93 %)
0 diff
(100 %id)
FN134164 breast carcinoma .d 1144 to 1215 77 to 7     Submitted on the opposite strand 71/77
(92 %)
0 diff
(100 %id)
BM873539   .d 1147 to 1687 541 to 1       541/541
(100 %)
0 diff
(100 %id)
FN093639 breast carcinoma .d 1158 to 1235 1 to 77       77/77
(100 %)
4 diff
(94.9 %id)
AW302357 brain, three pooled meningiomas .d 1171 to 1685 513 to 1       513/513
(100 %)
14 diff
(97.3 %id)
BM669297 eye, lens .d 1194 to 1827 635 to 1   fully sequenced,   635/635
(100 %)
2 diff
(99.7 %id)
AA701607 liver and spleen .d 1198 to 1685 488 to 1       488/488
(100 %)
2 diff
(99.6 %id)
AA903408 pooled germ cell tumors .d 1206 to 1631 25 to 450     Submitted on the opposite strand 426/437
(97 %)
10 diff
(97.8 %id)
AI829826 lymph node, lymphoma, follicular mixed small and largecell .d 1210 to 1809 598 to 1       598/599
(99 %)
10 diff
(98.4 %id)
BM970827 lung .d 1210 to 1827 618 to 1       618/625
(98 %)
4 diff
(99.4 %id)
AA640106 lung, lung tumor .d 1214 to 1685 471 to 1       471/486
(96 %)
12 diff
(97.6 %id)
CA423041 cell lines, Chondrosarcoma .d 1215 to 1827 613 to 1       613/613
(100 %)
3 diff
(99.6 %id)
AA669918 bone marrow stroma .d 1226 to 1629 394 to 1       394/394
(100 %)
26 diff
(93.5 %id)
CA942368 Pancreas, Purified pancreatic islet .d 1233 to 1344 1 to 112       112/112
(100 %)
1 diff
(99.2 %id)
AA069672   .d 1239 to 1809 571 to 1       571/571
(100 %)
9 diff
(98.5 %id)
BF997054 placenta_normal .d 1249 to 1540 178 to 469       292/470
(62 %)
7 diff
(98.6 %id)
BF953608 nervous_normal .d 1254 to 1712 459 to 1       459/459
(100 %)
1 diff
(99.8 %id)
AA042864 uterus .d 1255 to 1786 1 to 530   fully sequenced,   530/530
(100 %)
5 diff
(99.1 %id)
AA126685 uterus .d 1255 to 1435 1 to 182   fully sequenced,   182/182
(100 %)
1 diff
(99.5 %id)
AI023923 liver and spleen .d 1255 to 1817 557 to 1       557/557
(100 %)
14 diff
(97.5 %id)
BF589707 Prostate .d 1259 to 1588 330 to 1       330/331
(99 %)
32 diff
(90.4 %id)
DB554100 hypothalamus .d 1271 to 1685 1 to 414     Submitted on the opposite strand 414/414
(100 %)
2 diff
(99.6 %id)
AA483607 Ewing's sarcoma .d 1272 to 1691 422 to 2       421/422
(99 %)
1 diff
(99.8 %id)
DB561171 hypothalamus .d 1273 to 1685 1 to 420     Submitted on the opposite strand 420/420
(100 %)
13 diff
(97.0 %id)
BE302001 cervix .d 1283 to 1821 539 to 1       539/539
(100 %)
7 diff
(98.8 %id)
BF894762 marrow .d 1293 to 1700 421 to 17     Submitted on the opposite strand 405/421
(96 %)
0 diff
(100 %id)
AW609613 stomach .d 1296 to 1544 252 to 4       249/254
(98 %)
3 diff
(98.9 %id)
AW815833 stomach .d 1296 to 1575 284 to 7       278/286
(97 %)
3 diff
(99.0 %id)
BG391703 embryonal carcinoma, cell line, testis .d 1296 to 1827 1 to 533       533/533
(100 %)
3 diff
(99.5 %id)
DB080450 testis .d 1298 to 1809 2 to 513   capped, AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 512/512
(100 %)
0 diff
(100 %id)
BQ030041 lung, Metastatic Chondrosarcoma .d 1307 to 1827 521 to 1       521/521
(100 %)
0 diff
(100 %id)
CA425816 cell lines, Chondrosarcoma .d 1309 to 1823 516 to 1       516/516
(100 %)
3 diff
(99.5 %id)
AI291840 placenta .d 1314 to 1812 499 to 1       499/499
(100 %)
3 diff
(99.4 %id)
AI381502 pooled .d 1314 to 1828 515 to 1       515/515
(100 %)
3 diff
(99.5 %id)
AI565611 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .d 1314 to 1815 502 to 1       502/502
(100 %)
7 diff
(98.7 %id)
AI619912 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .d 1314 to 1810 497 to 1       497/497
(100 %)
1 diff
(99.8 %id)
AW235086 Kidney .d 1314 to 1822 509 to 1       509/509
(100 %)
1 diff
(99.9 %id)
BM974730 lung .d 1314 to 1827 514 to 1       514/536
(95 %)
0 diff
(100 %id)
AA788576   .d 1315 to 1818 498 to 1       498/498
(100 %)
12 diff
(97.6 %id)
BE934994 marrow .d 1324 to 1728 21 to 425       405/425
(95 %)
6 diff
(98.6 %id)
AI580826   .d 1329 to 1813 485 to 1       485/485
(100 %)
1 diff
(99.8 %id)
CN371672 embryonic stem cells, DMSO-treated H9 cellline .d 1333 to 1811 1 to 479       479/479
(100 %)
5 diff
(99.0 %id)
DB571497 hypothalamus .d 1339 to 1815 1 to 477     Submitted on the opposite strand 477/478
(99 %)
1 diff
(99.8 %id)
N95392 lung .d 1343 to 1822 479 to 1       479/479
(100 %)
4 diff
(99.2 %id)
AI375729   .d 1345 to 1816 472 to 1       472/472
(100 %)
0 diff
(100 %id)
AI631440 pooled germ cell tumors .d 1345 to 1809 463 to 1       463/463
(100 %)
0 diff
(100 %id)
AI334962 2 pooled tumors (clear cell type), Kidney .d 1351 to 1817 466 to 1       466/466
(100 %)
1 diff
(99.8 %id)
AU144763.
matches multiple genes
whole embryo, mainly head .d 1352 to 1804 459 to 6     also hits gene PJA2 454/537
(84 %)
0 diff
(100 %id)
AI982567 pooled germ cell tumors .d 1353 to 1817 465 to 1       465/465
(100 %)
11 diff
(97.7 %id)
AI334964 2 pooled tumors (clear cell type), Kidney .d 1355 to 1817 465 to 3       463/465
(99 %)
0 diff
(100 %id)
DB574134 hypothalamus .d 1363 to 1807 1 to 445     Submitted on the opposite strand 445/447
(99 %)
2 diff
(99.6 %id)
DB552341 hippocampus .d 1365 to 1808 1 to 444     Submitted on the opposite strand 444/444
(100 %)
1 diff
(99.8 %id)
AI669755 Prostate .d 1365 to 1809 446 to 1       446/446
(100 %)
1 diff
(99.8 %id)
AW005947 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .d 1377 to 1809 432 to 1       432/432
(100 %)
1 diff
(99.8 %id)
AA908462 ovary, serous adenocarcinoma .d 1386 to 1809 416 to 1       416/416
(100 %)
8 diff
(98.1 %id)
AA169326   .d 1388 to 1809 427 to 1       427/427
(100 %)
5 diff
(98.9 %id)
BU955512 mixed (pool of 40 RNAs) .d 1389 to 1814 1 to 426       426/430
(99 %)
4 diff
(99.1 %id)
F33435 pectoral muscle (after mastectomy) .d 1398 to 1806 1 to 409       409/409
(100 %)
0 diff
(100 %id)
AA676341 liver and spleen .d 1403 to 1817 414 to 1       414/414
(100 %)
4 diff
(99.1 %id)
AA101255 brain, neuroepithelial cells .d 1403 to 1810 410 to 1       410/410
(100 %)
2 diff
(99.6 %id)
AA156824 uterus .d 1405 to 1816 418 to 1   fully sequenced,   418/418
(100 %)
16 diff
(96.2 %id)
AA101351 brain, neuroepithelial cells .d 1406 to 1810 409 to 1       409/410
(99 %)
4 diff
(99.1 %id)
DB561182 hypothalamus .d 1416 to 1807 1 to 393     Submitted on the opposite strand 393/395
(99 %)
2 diff
(99.5 %id)
AW189578 serous papillary carcinoma, high grade, 2pooled tumors, uterus .d 1419 to 1833 413 to 1       413/413
(100 %)
24 diff
(94.2 %id)
BM994447 lung, Metastatic Chondrosarcoma .d 1442 to 1827 385 to 1       385/489
(78 %)
2 diff
(99.6 %id)
AW474060 lymph node, lymphoma, follicular mixed small and largecell .d 1445 to 1820 375 to 1       375/379
(98 %)
14 diff
(96.4 %id)
AW249892 lung, small cell carcinoma .d 1453 to 1820 368 to 1       368/368
(100 %)
2 diff
(99.5 %id)
AA044415 uterus .d 1471 to 1809 344 to 1   fully sequenced,   344/344
(100 %)
4 diff
(98.9 %id)
AW371260 breast .d 1489 to 1839 1 to 352       352/511
(68 %)
9 diff
(98.3 %id)
AW381515 head_neck .d 1490 to 1802 1 to 313       313/314
(99 %)
7 diff
(97.8 %id)
AW381537 head_neck .d 1490 to 1726 236 to 1       236/236
(100 %)
2 diff
(99.2 %id)
AW381476 head_neck .d 1495 to 1792 1 to 295       295/295
(100 %)
9 diff
(97.0 %id)
AW381482 head_neck .d 1499 to 1755 2 to 258       257/258
(99 %)
8 diff
(96.9 %id)
AW381510 head_neck .d 1507 to 1792 7 to 291       285/291
(97 %)
2 diff
(99.4 %id)
AI720441 colon .d 1511 to 1804 299 to 6       294/299
(98 %)
0 diff
(100 %id)
AW381459 head_neck .d 1536 to 1803 1 to 270       270/289
(93 %)
13 diff
(95.6 %id)
BF350407 head_neck .d 1541 to 1763 1 to 222       222/222
(100 %)
12 diff
(94.6 %id)
DA093604 cerebellum .d 1549 to 1809 2 to 262   capped, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 261/262
(99 %)
1 diff
(99.7 %id)
AW016196   .d 1556 to 1826 271 to 1       271/271
(100 %)
3 diff
(98.9 %id)
BM727054 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 1564 to 1809 1 to 245   fully sequenced, AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 245/245
(100 %)
1 diff
(99.6 %id)
BU741297 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .d 1667 to 1827 161 to 1   fully sequenced, Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 161/161
(100 %)
1 diff
(99.4 %id)
DC297853   .e 1 to 574 1 to 577       577/577
(100 %)
4 diff
(99.4 %id)
DC356689 heart .e 1 to 555 1 to 555       555/555
(100 %)
1 diff
(99.9 %id)
DC389691 Spleen .e 1 to 576 1 to 578   tiling clone,   578/578
(100 %)
2 diff
(99.7 %id)
DC412906 liver, tumor tissue .e 1 to 560 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
DC298853 adrenal gland .e 10 to 574 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
DC357379   .e 10 to 700 1 to 694       694/700
(99 %)
5 diff
(99.3 %id)
DC390265 Spleen .e 10 to 574 1 to 566       566/566
(100 %)
1 diff
(99.9 %id)
DC395696 testis .e 10 to 548 1 to 540       540/540
(100 %)
1 diff
(99.9 %id)
DC389810 Spleen .e 12 to 601 1 to 590       590/590
(100 %)
0 diff
(100 %id)
DC393253 breast, tumor tissue .e 12 to 576 1 to 568       568/568
(100 %)
3 diff
(99.5 %id)
NM_203284.1   .e 20 to 2518 1 to 2499 exact RefSeq,   2499/2499
(100 %)
0 diff
(100 %id)
BM555733 duodenal adenocarcinoma, cell line, small intestine .e 23 to 976 1 to 960       960/1034
(92 %)
18 diff
(98.3 %id)
CV571688 cornea, eye .e 29 to 610 1 to 582       582/582
(100 %)
0 diff
(100 %id)
AL525553 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .e 30 to 909 1 to 877       877/981
(89 %)
24 diff
(97.6 %id)
DB107051 thymus .e 30 to 618 2 to 590   capped   589/589
(100 %)
1 diff
(99.9 %id)
DW429694 Liver .e 162 to 547 12 to 397       386/398
(96 %)
7 diff
(98.3 %id)
DW427861 Liver .e 192 to 459 10 to 277       268/277
(96 %)
6 diff
(97.9 %id)
BE782718 eye, retinoblastoma .e 192 to 902 1 to 712       714/910
(78 %)
29 diff
(96.9 %id)
CD686476 normal nasopharynx .e 193 to 764 28 to 600       573/600
(95 %)
17 diff
(97.2 %id)
BF216466 brain, glioblastoma .e 196 to 732 1 to 535       535/827
(64 %)
22 diff
(97.4 %id)
DA584735 lung .e 198 to 775 2 to 581   capped   580/580
(100 %)
3 diff
(99.5 %id)
DB021099 testis .e 200 to 732 2 to 534   capped   533/542
(98 %)
7 diff
(98.8 %id)
DA054528 cerebellum .e 201 to 757 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA271824 caudate nucleus .e 201 to 773 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
CD695166 normal nasopharynx .e 203 to 694 46 to 538       493/538
(91 %)
13 diff
(97.6 %id)
BF242424 bone marrow, from acute myelogenous leukemia .e 204 to 832 1 to 631       631/634
(99 %)
10 diff
(98.5 %id)
CD685060 normal nasopharynx .e 205 to 849 39 to 683       645/683
(94 %)
8 diff
(98.9 %id)
DA469676   .e 205 to 757 9 to 560   capped   552/552
(100 %)
3 diff
(99.5 %id)
CD639583 pooled .e 205 to 911 1 to 700       700/719
(97 %)
15 diff
(98.0 %id)
DA674279   .e 206 to 805 2 to 602   capped   601/601
(100 %)
2 diff
(99.7 %id)
DA695702   .e 206 to 767 2 to 564   capped   563/563
(100 %)
2 diff
(99.7 %id)
DA375153 thalamus .e 209 to 769 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
AL708524 human skeletal muscle .e 209 to 810 1 to 605       605/609
(99 %)
6 diff
(99.1 %id)
DA595856 lung .e 209 to 769 2 to 562   capped   561/561
(100 %)
2 diff
(99.7 %id)
BF214796 bone marrow, from acute myelogenous leukemia .e 209 to 555 1 to 349       347/472
(73 %)
10 diff
(97.9 %id)
DA840517 placenta .e 209 to 749 2 to 543   capped   542/542
(100 %)
1 diff
(99.9 %id)
DA952813 Spleen .e 209 to 748 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DA019935   .e 210 to 766 2 to 560   capped   559/559
(100 %)
2 diff
(99.7 %id)
DA728584   .e 210 to 951 2 to 746   capped   745/762
(97 %)
11 diff
(98.6 %id)
DA013125 adrenal gland .e 211 to 771 2 to 562   capped   561/561
(100 %)
3 diff
(99.5 %id)
DA355214 subthalamic nucleus .e 211 to 451 2 to 243   capped   242/242
(100 %)
1 diff
(99.6 %id)
BX492752   .e 211 to 733 1 to 523       523/523
(100 %)
2 diff
(99.7 %id)
DA361569 subthalamic nucleus .e 212 to 766 2 to 557   capped   556/556
(100 %)
3 diff
(99.5 %id)
CV572580 cornea, eye .e 212 to 844 1 to 633       633/633
(100 %)
0 diff
(100 %id)
DA896402 skeletal muscle .e 212 to 781 2 to 572   capped   571/571
(100 %)
2 diff
(99.7 %id)
DA953037 Spleen .e 212 to 790 2 to 582   capped   581/581
(100 %)
2 diff
(99.7 %id)
CD691541 normal nasopharynx .e 214 to 889 28 to 702       677/702
(96 %)
7 diff
(99.1 %id)
DA565279 heart .e 214 to 697 2 to 485   capped   484/484
(100 %)
1 diff
(99.8 %id)
BG623919 placenta .e 214 to 1043 5 to 838       834/839
(99 %)
27 diff
(96.8 %id)
CA772457 Pancreas, Purified pancreatic islet .e 214 to 700 1 to 487       487/487
(100 %)
1 diff
(99.8 %id)
DA076058 cerebellum .e 217 to 759 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DA568258 whole embryo, mainly head .e 217 to 938 2 to 727   capped   722/727
(99 %)
11 diff
(98.5 %id)
DN996953 breast cancer, Mammary gland (cancer tissue) .e 218 to 836 9 to 627       619/627
(98 %)
0 diff
(100 %id)
DB042916 testis .e 219 to 790 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
CD693728 normal nasopharynx .e 220 to 755 1 to 536       536/536
(100 %)
0 diff
(100 %id)
DB453446 testis .e 221 to 724 1 to 504       504/504
(100 %)
3 diff
(99.5 %id)
BG501772 embryonal carcinoma, testis .e 222 to 928 1 to 705       707/707
(100 %)
12 diff
(98.4 %id)
BQ439993 eye, retinoblastoma .e 225 to 1065 23 to 865       843/865
(97 %)
7 diff
(99.2 %id)
BC064976 Eye, retinoblastoma .e 226 to 2046 1 to 1821 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 1821/1821
(100 %)
0 diff
(100 %id)
BX344563.
matches multiple genes
placenta .e 231 to 1111 1 to 881   fully sequenced, also hits gene CITED2 881/881
(100 %)
1 diff
(99.9 %id)
CR612633 HeLa cells Cot 25-normalized .e 233 to 2017 1 to 1785 exact     1785/1785
(100 %)
0 diff
(100 %id)
CR597051 placenta .e 238 to 2046 1 to 1809 exact AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 1809/1809
(100 %)
0 diff
(100 %id)
CR598925 HeLa cells Cot 25-normalized .e 242 to 2015 1 to 1774 exact     1774/1774
(100 %)
0 diff
(100 %id)
AL580717 T cells from T cell leukemia .e 242 to 1117 15 to 891   fully sequenced,   877/891
(98 %)
12 diff
(98.7 %id)
AL555798.
matches multiple genes
placenta .e 242 to 1111 9 to 879   fully sequenced, AAA also hits gene CITED2 871/879
(99 %)
7 diff
(99.3 %id)
AL525502 brain, neuroblastoma cells, Neuroblastoma Cot 25-normalized .e 1053 to 2014 959 to 1       959/962
(99 %)
14 diff
(98.6 %id)
BX344562.
matches multiple genes
placenta .e 1081 to 1985 935 to 32   fully sequenced, also hits gene CITED2 904/935
(96 %)
0 diff
(100 %id)
AL578212.
matches multiple genes
placenta .e 1081 to 2015 935 to 1   fully sequenced, also hits gene CITED2 935/935
(100 %)
6 diff
(99.4 %id)
AL580716 T cells from T cell leukemia .e 1087 to 1999 912 to 1   fully sequenced,   878/878
(100 %)
12 diff
(98.7 %id)
DB353625   .e 1447 to 2046 599 to 1       599/626
(95 %)
17 diff
(97.3 %id)
AU143975 whole embryo, mainly head .e 1551 to 2046 495 to 1       495/564
(87 %)
4 diff
(99.3 %id)
CA772159 Pancreas, Purified pancreatic islet .e 1585 to 2045 461 to 1       461/461
(100 %)
0 diff
(100 %id)
BG532964 embryonal carcinoma, testis .f 1 to 602 1 to 616   tiling clone,   613/757
(80 %)
34 diff
(95.6 %id)
BC020780 Testis, embryonal carcinoma .f 3 to 1678 1 to 1676 exact tiling clone, available from MGC, AAA   1676/1676
(100 %)
1 diff
(100.0 %id)
NM_203283.1   .f 3 to 2274 1 to 2272 exact RefSeq,   2272/2272
(100 %)
0 diff
(100 %id)
BF185780 brain, glioblastoma .f 37 to 665 1 to 632       629/850
(74 %)
14 diff
(98.4 %id)
EL736660 mixed .f 168 to 792 1 to 625       625/625
(100 %)
1 diff
(99.9 %id)
TI_1948233692   .f 168 to 1131 138 to 1095       958/1300
(73 %)
41 diff
(96.9 %id)
TI_1948233693   .f 168 to 1050 142 to 1027       886/1320
(67 %)
12 diff
(99.1 %id)
TI_1948233959   .f 168 to 1201 129 to 1161       1033/1308
(78 %)
44 diff
(96.7 %id)
TI_1948233960   .f 168 to 1191 132 to 1161       1030/1274
(80 %)
44 diff
(96.6 %id)
TI_1948234230   .f 168 to 912 138 to 882       745/1369
(54 %)
9 diff
(99.4 %id)
TI_1948234231   .f 168 to 1211 140 to 1182       1043/1270
(82 %)
29 diff
(97.8 %id)
TI_1948234500   .f 168 to 1050 141 to 1024       884/1322
(66 %)
20 diff
(98.5 %id)
TI_1948234501   .f 168 to 1130 137 to 1099       963/1276
(75 %)
17 diff
(98.7 %id)
CR603040 HeLa cells Cot 25-normalized .f 218 to 1773 1 to 1556       1556/1556
(100 %)
0 diff
(100 %id)
CR623063 HeLa cells Cot 25-normalized .f 218 to 1769 1 to 1552       1552/1552
(100 %)
0 diff
(100 %id)
CR625719 Neuroblastoma Cot 10-normalized .f 218 to 1787 1 to 1570   tiling clone,   1570/1570
(100 %)
0 diff
(100 %id)
AL556654 placenta .f 218 to 994 1 to 774   fully sequenced,   774/774
(100 %)
2 diff
(99.8 %id)
AL555008 placenta .f 218 to 994 1 to 777   fully sequenced,   777/777
(100 %)
1 diff
(99.9 %id)
BM928544 hepatocellular carcinoma, cell line, Liver .f 440 to 1321 1 to 886       886/1072
(82 %)
16 diff
(98.6 %id)
BQ653366 hepatocellular carcinoma, cell line, Liver .f 440 to 1290 1 to 853       853/909
(93 %)
17 diff
(98.2 %id)
BQ652496 hepatocellular carcinoma, cell line, Liver .f 440 to 1274 1 to 841       841/893
(94 %)
17 diff
(98.1 %id)
BQ878366 epidermoid carcinoma, cell line, salivary gland .f 558 to 1515 1 to 965       965/969
(99 %)
27 diff
(97.3 %id)
BM928378 hepatocellular carcinoma, cell line, Liver .f 606 to 1620 22 to 1043       1022/1047
(97 %)
35 diff
(96.7 %id)
BQ649217 hepatocellular carcinoma, cell line, Liver .f 609 to 1529 18 to 941       924/941
(98 %)
27 diff
(97.2 %id)
CN371673 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 610 to 1267 1 to 658       658/658
(100 %)
2 diff
(99.7 %id)
BM928037 hepatocellular carcinoma, cell line, Liver .f 610 to 1637 1 to 1028       1028/1031
(99 %)
22 diff
(97.9 %id)
BQ646476 hepatocellular carcinoma, cell line, Liver .f 610 to 1539 1 to 935       935/936
(99 %)
16 diff
(98.3 %id)
BQ648139 hepatocellular carcinoma, cell line, Liver .f 610 to 1311 1 to 704       704/947
(74 %)
9 diff
(99.1 %id)
TI_1948234503   .f 652 to 1624 1079 to 110       970/1308
(74 %)
32 diff
(97.6 %id)
BF572511 melanotic melanoma, high MDR, skin .f 697 to 1401 1 to 697       697/904
(77 %)
27 diff
(97.1 %id)
BF976841 melanotic melanoma, high MDR, skin .f 697 to 1473 1 to 776       776/883
(87 %)
34 diff
(96.2 %id)
BP871798 embryonal kidney .f 766 to 1348 1 to 583       583/583
(100 %)
0 diff
(100 %id)
TI_1948234232   .f 795 to 1624 961 to 126       836/1316
(63 %)
26 diff
(98.1 %id)
TI_1948233962   .f 796 to 1624 881 to 53       829/1238
(66 %)
16 diff
(98.8 %id)
BU160688 melanotic melanoma, skin .f 804 to 1650 12 to 860       849/860
(98 %)
12 diff
(98.7 %id)
AL520857 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .f 806 to 1787 974 to 1       974/974
(100 %)
28 diff
(97.2 %id)
BE881980 leiomyosarcoma, uterus .f 810 to 1605 1 to 810       810/1112
(72 %)
55 diff
(95.1 %id)
TI_1948233695   .f 888 to 1624 884 to 139       746/1421
(52 %)
15 diff
(99.0 %id)
AL578866 placenta .f 964 to 1763 812 to 12   fully sequenced,   801/812
(98 %)
3 diff
(99.7 %id)
AL577615 placenta .f 964 to 1769 809 to 1   fully sequenced,   809/809
(100 %)
3 diff
(99.7 %id)
BE738580 brain, glioblastoma .f 1104 to 1751 661 to 1       661/661
(100 %)
30 diff
(95.5 %id)
BF055508 pooled .f 1107 to 1805 698 to 1       698/698
(100 %)
13 diff
(98.2 %id)
AW131544 brain, medulloblastoma .f 1115 to 1811 696 to 1       696/696
(100 %)
17 diff
(97.6 %id)
AI984992 Kidney .f 1122 to 1809 691 to 1       691/691
(100 %)
29 diff
(95.9 %id)
BM668328 eye, Retina Foveal and Macular .f 1148 to 1820 673 to 1       673/688
(97 %)
0 diff
(100 %id)
BQ027081 Chondrosarcoma, Left Pubic Bone .f 1153 to 1820 668 to 1       668/668
(100 %)
0 diff
(100 %id)
TI_149312256   .f 1155 to 1832 732 to 55       678/1004
(67 %)
5 diff
(99.6 %id)
BU689590 lung .f 1156 to 1820 665 to 1       665/665
(100 %)
5 diff
(99.3 %id)
AL700068 human skeletal muscle .f 1157 to 1802 1 to 647       647/647
(100 %)
1 diff
(99.9 %id)
BQ028717 placenta, Placenta Choriocarcinoma .f 1160 to 1820 661 to 1       661/661
(100 %)
1 diff
(99.9 %id)
CR994064 T-Lymphocytes .f 1167 to 1830 1 to 664   tiling clone,   664/712
(93 %)
1 diff
(99.9 %id)
BM996676 lung, Metastatic Chondrosarcoma .f 1168 to 1820 654 to 1       654/654
(100 %)
5 diff
(99.3 %id)
BF343373 brain, glioblastoma with EGFR amplification .f 1169 to 1790 12 to 639       628/686
(91 %)
21 diff
(97.0 %id)
TI_149289252   .f 1175 to 1832 722 to 65       658/722
(91 %)
3 diff
(99.6 %id)
TI_149292658   .f 1307 to 1833 588 to 62       527/777
(67 %)
0 diff
(100 %id)
BM147769 leukopheresis .f 1373 to 1841 1 to 469       469/471
(99 %)
15 diff
(96.9 %id)
DB548735 hippocampus .f 1412 to 1859 1 to 446     Submitted on the opposite strand 446/446
(100 %)
4 diff
(99.2 %id)
AW371378 breast .f 1500 to 1832 1 to 333       333/333
(100 %)
12 diff
(96.4 %id)
AW381496 head_neck .f 1505 to 1785 1 to 280       280/280
(100 %)
1 diff
(99.7 %id)
DA275056 corpus callosum .f 1515 to 2073 2 to 559   capped   558/558
(100 %)
2 diff
(99.7 %id)
CB048266 Prostate .f 1519 to 1829 314 to 2       313/323
(96 %)
0 diff
(100 %id)
CB049330 Prostate .f 1521 to 1829 315 to 5       311/327
(95 %)
0 diff
(100 %id)
AW393428 stomach .f 1602 to 1891 15 to 307       293/310
(94 %)
25 diff
(92.0 %id)
BE698821 uterus_tumor .f 1634 to 1839 1 to 212       212/243
(87 %)
15 diff
(93.9 %id)
DB285889 uterus .f 1642 to 2207 2 to 567   capped   566/566
(100 %)
3 diff
(99.5 %id)
AI658933 Prostate .f 1658 to 1972 342 to 30   AAA   313/320
(97 %)
10 diff
(96.9 %id)
DB240761 trachea .f 1694 to 2273 2 to 584   tiling clone, capped   583/583
(100 %)
3 diff
(99.5 %id)
CN363632 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f 1703 to 1990 1 to 287       287/287
(100 %)
3 diff
(99.0 %id)
AL600045   .f 1724 to 2260 1 to 538   tiling clone,   538/538
(100 %)
3 diff
(99.5 %id)
CN363628 embryonic stem cells, cell lines H1, H7, andH9 .f 1830 to 2180 1 to 351       351/351
(100 %)
0 diff
(100 %id)
AA331693 Embryo, 8 weeks .f 1878 to 2139 1 to 264       264/271
(97 %)
3 diff
(98.9 %id)
CN363625 embryonic stem cells, cell lines H1, H7, andH9 .f 2075 to 2222 1 to 148       148/148
(100 %)
0 diff
(100 %id)
BC053531 Eye, retinoblastoma .g 1 to 1690 1 to 1690 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 1690/1690
(100 %)
0 diff
(100 %id)
BE783436 eye, retinoblastoma .g 22 to 763 1 to 741   available from MGC,   741/947
(78 %)
22 diff
(97.7 %id)
AK303244 thymus .h 1 to 1519 1 to 1519 exact tiling clone,   1519/1519
(100 %)
1 diff
(100.0 %id)
BM926656 pooled lung and spleen .h 579 to 1619 16 to 1061       1046/1128
(92 %)
23 diff
(98.0 %id)
AA935398 Kidney, kidney tumor .h 812 to 1252 461 to 22   AAA   440/498
(88 %)
18 diff
(96.4 %id)
AW084668 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .h 878 to 1384 506 to 1       506/506
(100 %)
5 diff
(99.1 %id)
AI916589 Kidney .h 917 to 1384 469 to 1       469/469
(100 %)
4 diff
(99.2 %id)
W25228 lung .h 951 to 1389 1 to 440       440/440
(100 %)
1 diff
(99.8 %id)
AI352024 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h 958 to 1258 305 to 1       305/305
(100 %)
6 diff
(98.1 %id)
AW384329 head_neck .h 979 to 1579 1 to 601       601/617
(97 %)
14 diff
(97.8 %id)
AA969666 pooled .h 984 to 1182 1 to 199     Submitted on the opposite strand 199/199
(100 %)
0 diff
(100 %id)
FN098130 breast carcinoma .h 1215 to 1305 90 to 1     Submitted on the opposite strand 90/91
(98 %)
2 diff
(97.9 %id)
BU622354 Cell Line, Chondrosarcoma .h 1385 to 2095 711 to 1   tiling clone,   711/711
(100 %)
0 diff
(100 %id)
BQ023404 placenta .h 1410 to 1953 559 to 16   AAA   544/544
(100 %)
0 diff
(100 %id)
DC296671 cord Blood .i 1 to 562 1 to 562   tiling clone,   562/562
(100 %)
1 diff
(99.9 %id)
DC295626 synovial membrane tissue from rheumatioidarthritis .i 5 to 569 1 to 565       565/565
(100 %)
2 diff
(99.7 %id)
DC419421 uterus, tumor tissue .i 5 to 518 1 to 515       515/516
(99 %)
2 diff
(99.7 %id)
DC297318   .i 10 to 569 1 to 559       559/559
(100 %)
2 diff
(99.7 %id)
DC296794 cord Blood .i 13 to 590 1 to 578       578/578
(100 %)
1 diff
(99.9 %id)
DC297006   .i 13 to 586 1 to 574       574/574
(100 %)
0 diff
(100 %id)
DC388330 small intestine .i 13 to 602 1 to 592       592/592
(100 %)
4 diff
(99.4 %id)
DC424672 placenta .i 14 to 531 5 to 523       519/527
(98 %)
7 diff
(98.7 %id)
DC380299 placenta .i 80 to 645 1 to 566       566/566
(100 %)
6 diff
(99.0 %id)
CR620986 Placenta Cot 25-normalized .i 157 to 1833 1 to 1677 exact tiling clone,   1677/1677
(100 %)
0 diff
(100 %id)
AL544062 placenta, Placenta Cot 25-normalized .i 157 to 985 1 to 829   fully sequenced,   829/829
(100 %)
0 diff
(100 %id)
L07876   .i 163 to 428 1 to 266       266/266
(100 %)
0 diff
(100 %id)
Z36843 Pancreas .i 164 to 476 1 to 310       310/314
(98 %)
4 diff
(98.8 %id)
CN278935 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .i 189 to 513 1 to 325       325/325
(100 %)
0 diff
(100 %id)
BX386859 Neuroblastoma Cot 10-normalized .i 344 to 1147 1 to 804       804/804
(100 %)
1 diff
(99.9 %id)
BX404408 neuroblastoma .i 381 to 1286 1 to 907       907/907
(100 %)
2 diff
(99.8 %id)
BX438456 neuroblastoma .i 381 to 1353 1 to 971       971/971
(100 %)
7 diff
(99.3 %id)
AL520858 brain, neuroblastoma cells, Neuroblastoma Cot 10-normalized .i 381 to 1334 1 to 953       953/953
(100 %)
4 diff
(99.6 %id)
BQ052565 blood, natural killer cells, cell line .i 407 to 1340 1 to 940       940/1024
(91 %)
20 diff
(98.1 %id)
BU146797 brain, neuroblastoma, cell line .i 415 to 1290 23 to 898       876/898
(97 %)
8 diff
(99.2 %id)
BE885425 leiomyosarcoma, uterus .i 417 to 1142 1 to 724       726/831
(87 %)
21 diff
(97.5 %id)
CR981817 T-Lymphocytes .i 577 to 1372 1 to 797       797/859
(92 %)
4 diff
(99.6 %id)
BF086801 placenta_normal .i 885 to 1324 441 to 1       441/441
(100 %)
5 diff
(98.9 %id)
BM834981 stomach .i 900 to 1366 1 to 467       467/467
(100 %)
0 diff
(100 %id)
AL544023 placenta, Placenta Cot 25-normalized .i 959 to 1833 875 to 1   fully sequenced,   875/875
(100 %)
0 diff
(100 %id)
AW249681 lung, small cell carcinoma .i 1289 to 1871 583 to 1       583/583
(100 %)
2 diff
(99.7 %id)
FN118726 breast carcinoma .i 1303 to 1394 91 to 1     Submitted on the opposite strand 91/95
(95 %)
1 diff
(99.0 %id)
AW391454 stomach .i 1366 to 1636 278 to 9       270/297
(90 %)
0 diff
(100 %id)
AW815443 stomach .i 1366 to 1636 286 to 16       271/305
(88 %)
0 diff
(100 %id)
AW815506 stomach .i 1366 to 1606 256 to 17       240/275
(87 %)
0 diff
(100 %id)
AW815508 stomach .i 1366 to 1606 248 to 8       241/267
(90 %)
0 diff
(100 %id)
AW815512 stomach .i 1366 to 1613 256 to 6       251/275
(91 %)
0 diff
(100 %id)
CX163169 human embryonic stem cells differentiated toan early endodermal cell type .i 1368 to 2193 9 to 834   tiling clone,   826/834
(99 %)
11 diff
(98.7 %id)
AI144435 heart .i 1426 to 1737 312 to 1       312/312
(100 %)
3 diff
(99.1 %id)
BG942095 blood .i 1443 to 1737 325 to 31   AAA   295/295
(100 %)
3 diff
(99.0 %id)
AU158124 placenta .i 1508 to 1861 354 to 1       354/354
(100 %)
2 diff
(99.5 %id)
BF999008 placenta_normal .i 1520 to 1667 148 to 1       148/148
(100 %)
0 diff
(100 %id)
DN912329   .i 1551 to 1786 236 to 1       236/236
(100 %)
15 diff
(93.7 %id)
BQ956068 sciatic nerve .i 1578 to 2382 1 to 812   tiling clone,   812/931
(87 %)
14 diff
(98.5 %id)
AW843169 colon_normal .i 1603 to 1752 1 to 150       150/150
(100 %)
0 diff
(100 %id)
DB232324 trachea .i 1636 to 1861 2 to 227   capped, AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 226/226
(100 %)
0 diff
(100 %id)
BM856890 stomach .i 1637 to 1861 1 to 225   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 225/225
(100 %)
0 diff
(100 %id)
DA330798 hippocampus .i 1880 to 2424 2 to 545   tiling clone, capped   544/544
(100 %)
3 diff
(99.5 %id)
DA415771 thalamus .i 1886 to 2438 2 to 554   capped   553/553
(100 %)
4 diff
(99.3 %id)
DA236732 brain .i 1897 to 2489 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
DB260760 uterus .i 1897 to 2453 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DA237979 brain .i 1910 to 2486 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
AL138256 brain .i 1923 to 2525 1 to 602       602/602
(100 %)
1 diff
(99.9 %id)
DA803299 brain .i 2032 to 2582 2 to 552   capped   551/551
(100 %)
2 diff
(99.7 %id)
DB160702 thymus .i 2051 to 2637 2 to 587   capped   586/586
(100 %)
2 diff
(99.7 %id)
DB160778 thymus .i 2077 to 2616 2 to 541   capped   540/540
(100 %)
1 diff
(99.9 %id)
DA239465 brain .i 2101 to 2694 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
DA243264 brain .i 2133 to 2731 2 to 601   capped   600/600
(100 %)
1 diff
(99.9 %id)
DA117998 cerebellum .i 2149 to 2693 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DA231136 brain .i 2187 to 2735 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DB088544 testis .i 2200 to 2740 2 to 542   capped   541/541
(100 %)
0 diff
(100 %id)
DA594197 lung .i 2235 to 2800 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
BQ216324 melanotic melanoma, skin .i 2240 to 3022 1 to 791       791/902
(87 %)
27 diff
(97.1 %id)
DB156168 thymus .i 2244 to 2800 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA553070   .i 2251 to 2712 2 to 463   capped   462/462
(100 %)
0 diff
(100 %id)
CN363631 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .i 2288 to 2880 1 to 593   tiling clone,   593/593
(100 %)
0 diff
(100 %id)
DA859189 placenta .i 2331 to 2892 2 to 565   capped   564/564
(100 %)
2 diff
(99.7 %id)
DB074766 testis .i 2335 to 2878 2 to 547   capped   546/546
(100 %)
2 diff
(99.7 %id)
DB154670 thymus .i 2335 to 2894 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
BM822225 stomach .i 2352 to 2853 1 to 502       502/502
(100 %)
0 diff
(100 %id)
AW504414 lymph .i 2363 to 2916 8 to 561       554/561
(98 %)
6 diff
(99.0 %id)
TI_154160533   .i 2363 to 3074 90 to 799       710/712
(99 %)
6 diff
(99.2 %id)
DA808686 brain .i 2380 to 2941 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DA201567 brain .i 2381 to 2938 2 to 560   capped   559/559
(100 %)
4 diff
(99.3 %id)
DB143334 thymus .i 2461 to 3001 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
CV569460 cornea, eye .i 2516 to 3115 1 to 600       600/600
(100 %)
0 diff
(100 %id)
DA189140 amygdala .i 2531 to 3128 2 to 599   capped   598/598
(100 %)
1 diff
(99.9 %id)
BU934690 mixed (pool of 40 RNAs) .i 2533 to 3287 1 to 763       763/801
(95 %)
18 diff
(97.8 %id)
DA777560 brain .i 2534 to 3124 2 to 592   capped   591/591
(100 %)
2 diff
(99.7 %id)
AL598618   .i 2550 to 2991 1 to 442       442/442
(100 %)
0 diff
(100 %id)
BU164875 eye, retinoblastoma .i 2557 to 3328 36 to 815       780/890
(87 %)
13 diff
(98.6 %id)
BQ231520 melanotic melanoma, skin .i 2607 to 3427 1 to 827       827/870
(95 %)
10 diff
(98.9 %id)
DA789691 brain .i 2623 to 2982 2 to 361   capped   360/360
(100 %)
0 diff
(100 %id)
DB271307 uterus .i 2625 to 3165 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DA268940 caudate nucleus .i 2630 to 3179 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
GD150363   .i 2648 to 2827 1 to 180       180/181
(99 %)
6 diff
(96.7 %id)
DA365616 subthalamic nucleus .i 2748 to 3317 2 to 571   capped   570/571
(99 %)
1 diff
(99.9 %id)
BI092083 cervix .i 2782 to 3483 1 to 702       702/703
(99 %)
8 diff
(98.9 %id)
DA508415 brain .i 2843 to 3436 2 to 595   tiling clone, capped   594/594
(100 %)
0 diff
(100 %id)
DA791287 brain .i 2874 to 3498 2 to 627   capped   626/626
(100 %)
2 diff
(99.7 %id)
EH326244   .i 2891 to 2960 1 to 69       69/69
(100 %)
1 diff
(98.6 %id)
DB262231 uterus .i 2910 to 3486 2 to 579   capped   578/578
(100 %)
2 diff
(99.7 %id)
AA017688 eye, retina .i 2935 to 3183 1 to 249       249/249
(100 %)
1 diff
(99.6 %id)
AA333081 Embryo, 8 weeks .i 2946 to 3254 1 to 309       309/309
(100 %)
0 diff
(100 %id)
DA470812   .i 2960 to 3519 2 to 562   capped   561/561
(100 %)
1 diff
(99.9 %id)
DA344318 substantia nigra .i 2967 to 3554 2 to 588   capped   587/587
(100 %)
2 diff
(99.7 %id)
AA243565 germinal center B cell .i 2973 to 3209 1 to 237       237/237
(100 %)
1 diff
(99.6 %id)
DA206790 brain .i 2976 to 3537 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA144597 amygdala .i 2977 to 3553 2 to 578   capped   577/577
(100 %)
0 diff
(100 %id)
DA252378 caudate nucleus .i 2977 to 3553 2 to 580   capped   579/579
(100 %)
2 diff
(99.7 %id)
DB140036 thymus .i 2977 to 3541 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DA133298 alzheimer cortex .i 2978 to 3519 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA510257 brain .i 2978 to 3546 2 to 571   capped   570/570
(100 %)
1 diff
(99.9 %id)
DA773683 brain .i 2978 to 3540 2 to 564   capped   563/563
(100 %)
0 diff
(100 %id)
DB120736 thymus .i 2978 to 3537 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA943504 Spleen .i 2979 to 3554 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
BM669356 eye, fetal eyes .i 2979 to 3618 652 to 13       640/652
(98 %)
0 diff
(100 %id)
DA307399 hippocampus .i 2981 to 3576 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
DA296324 hippocampus .i 2983 to 3555 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA484782 brain .i 3011 to 3571 2 to 564   capped   563/563
(100 %)
3 diff
(99.5 %id)
DA531651 brain .i 3013 to 3624 2 to 614   capped   613/613
(100 %)
1 diff
(99.9 %id)
DA209058 brain .i 3027 to 3601 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA503857 brain .i 3031 to 3578 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA200881 brain .i 3039 to 3577 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DA547606   .i 3054 to 3596 2 to 544   capped   543/543
(100 %)
2 diff
(99.7 %id)
DB242488 stomach, tumor tissue .i 3054 to 3619 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB258851 uterus .i 3060 to 3600 2 to 542   capped   541/541
(100 %)
1 diff
(99.9 %id)
DB123447 thymus .i 3086 to 3615 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
DB101404 thymus .i 3090 to 3649 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
DA695554   .i 3098 to 3659 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DB039126 testis .i 3100 to 3654 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
DB174160 kidney, tumor tissue .i 3102 to 3655 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA491727 brain .i 3116 to 3649 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
DA670933   .i 3164 to 3756 2 to 594   capped   593/593
(100 %)
1 diff
(99.9 %id)
AI114481 Liver .i 3171 to 3826 657 to 1       657/657
(100 %)
3 diff
(99.6 %id)
DA304295 hippocampus .i 3176 to 3756 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
CN363630 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .i 3224 to 3916 1 to 693   tiling clone,   693/693
(100 %)
3 diff
(99.6 %id)
DB011321 colon, tumor tissue .i 3227 to 3792 2 to 568   capped   567/567
(100 %)
1 diff
(99.9 %id)
DA547189   .i 3238 to 3810 2 to 575   capped   574/574
(100 %)
3 diff
(99.5 %id)
AW856834 colon .i 3261 to 3445 13 to 203       191/217
(88 %)
20 diff
(90.8 %id)
AA449514   .i 3320 to 3759 1 to 440       440/440
(100 %)
0 diff
(100 %id)
AL138403 melanoma (MeWo cell line) .i 3337 to 3808 1 to 473     Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 473/473
(100 %)
3 diff
(99.4 %id)
BE783828 eye, retinoblastoma .i 3346 to 3979 1 to 631       631/901
(70 %)
8 diff
(99.2 %id)
TI_154107692   .i 3369 to 4203 919 to 99   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 821/939
(87 %)
17 diff
(98.2 %id)
DA080437 cerebellum .i 3487 to 4052 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA849109 placenta .i 3488 to 4052 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
CA447067 Chondrosarcoma, Left Pelvis .i 3511 to 4203 712 to 20   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 693/693
(100 %)
0 diff
(100 %id)
DA713334   .i 3522 to 4093 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
DB267303 uterus .i 3526 to 4113 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
DA678299   .i 3552 to 4383 2 to 832   tiling clone, capped   831/834
(99 %)
3 diff
(99.7 %id)
DB264493 uterus .i 3557 to 4124 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DA471439   .i 3560 to 4134 2 to 578   capped   577/577
(100 %)
3 diff
(99.5 %id)
DA691649   .i 3572 to 4139 2 to 569   capped   568/568
(100 %)
0 diff
(100 %id)
DB033233 testis .i 3577 to 4168 2 to 594   capped   593/594
(99 %)
2 diff
(99.7 %id)
DB125407 thymus .i 3580 to 4158 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
DA253213 caudate nucleus .i 3581 to 4163 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DA374708 thalamus .i 3581 to 4128 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
BM546575 brain, hippocampus .i 3583 to 4589 10 to 1030       1021/1144
(89 %)
41 diff
(96.5 %id)
DA548720   .i 3589 to 4163 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA903780   .i 3589 to 4152 2 to 566   capped   565/565
(100 %)
1 diff
(99.9 %id)
DB047632 testis .i 3600 to 4166 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DA281941 corpus callosum .i 3601 to 4141 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
AA481203 germinal center B cell .i 3601 to 4101 1 to 502     Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 502/502
(100 %)
2 diff
(99.7 %id)
DA601422   .i 3602 to 4168 2 to 569   capped   568/568
(100 %)
2 diff
(99.7 %id)
BE538629 cervix .i 3640 to 4386 1 to 755       755/859
(87 %)
31 diff
(96.4 %id)
AF086058 multiple sclerosis lesions .i 3670 to 3926 1 to 257   fully sequenced, AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 257/257
(100 %)
1 diff
(99.7 %id)
BU154763 melanotic melanoma, skin .i 3672 to 4385 1 to 720       720/970
(74 %)
15 diff
(98.5 %id)
DA476899   .i 3685 to 4218 2 to 535   capped   534/534
(100 %)
1 diff
(99.9 %id)
N47804 multiple sclerosis lesions .i 3700 to 3921 225 to 1   fully sequenced, Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 225/225
(100 %)
2 diff
(99.2 %id)
CN363629 embryonic stem cells, cell lines H1, H7, andH9 .i 3701 to 4440 1 to 740       740/740
(100 %)
6 diff
(99.2 %id)
DB026955 testis .i 3757 to 4318 2 to 563   capped   562/562
(100 %)
4 diff
(99.3 %id)
AK056944 skeletal muscle .i 3775 to 5596 1 to 1822   tiling clone, available from FLJ,   1822/1822
(100 %)
2 diff
(99.9 %id)
BX645073   .i 3809 to 4517 1 to 709       709/709
(100 %)
3 diff
(99.6 %id)
DA977755 synovial membrane tissue from rheumatioidarthritis .i 3810 to 4362 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA986890 synovial membrane tissue from rheumatioidarthritis .i 3819 to 4373 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
N29236 melanocyte .i 3884 to 4325 1 to 448       448/448
(100 %)
8 diff
(98.3 %id)
CN363627 embryonic stem cells, DMSO-treated H9 cellline .i 3901 to 4578 1 to 678       678/678
(100 %)
6 diff
(99.2 %id)
CB131192 Liver .i 3943 to 4555 1 to 613       613/613
(100 %)
1 diff
(99.9 %id)
BG287882 bladder, transitional cell papilloma, cell line .i 4006 to 4789 1 to 774       774/793
(97 %)
20 diff
(97.5 %id)
BM920721 pooled brain, lung, testis .i 4081 to 4999 19 to 950       932/1085
(85 %)
25 diff
(97.7 %id)
BM749921 stomach .i 4100 to 4754 1 to 648       648/648
(100 %)
9 diff
(98.7 %id)
BM903746 ovary (pool of 3) .i 4129 to 4911 1 to 805       805/1056
(76 %)
35 diff
(96.7 %id)
BG778669 adenocarcinoma, Prostate .i 4146 to 4936 1 to 802       802/1019
(78 %)
26 diff
(97.5 %id)
AA156663 uterus .i 4235 to 4655 1 to 418   fully sequenced,   418/418
(100 %)
0 diff
(100 %id)
BQ417286 Pancreas, Purified pancreatic islet .i 4242 to 4869 1 to 623       623/623
(100 %)
5 diff
(99.2 %id)
CK825940 Pancreas, Purified pancreatic islet .i 4291 to 4836 1 to 541     Submitted on the opposite strand 541/541
(100 %)
2 diff
(99.7 %id)
BF244256 brain, glioblastoma .i 4317 to 4887 1 to 568       568/568
(100 %)
3 diff
(99.5 %id)
Z30299   .i 4319 to 4698 1 to 380       380/380
(100 %)
0 diff
(100 %id)
BM801823 duodenal adenocarcinoma, cell line, small intestine .i 4529 to 5600 1118 to 36     Submitted on the opposite strand 1083/1128
(96 %)
0 diff
(100 %id)
BM845391 myeloma .i 4572 to 4928 1 to 357       357/357
(100 %)
0 diff
(100 %id)
AA156769 uterus .i 4625 to 4998 361 to 1   fully sequenced,   361/361
(100 %)
1 diff
(99.8 %id)
EH328598   .i 4648 to 4704 1 to 57       57/57
(100 %)
0 diff
(100 %id)
TI_149288430   .i 4707 to 5596 966 to 80   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 887/1035
(85 %)
28 diff
(97.3 %id)
AA931629 carcinoid, lung .i 4728 to 5187 1 to 460     Submitted on the opposite strand 460/460
(100 %)
0 diff
(100 %id)
AA973809 carcinoid, lung .i 4728 to 5153 1 to 426     Submitted on the opposite strand 426/426
(100 %)
0 diff
(100 %id)
AA242861 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 4732 to 5173 1 to 442       442/442
(100 %)
0 diff
(100 %id)
BQ365366 placenta_normal .i 4735 to 4997 275 to 10       266/288
(92 %)
0 diff
(100 %id)
BG180107 adenocarcinoma, cell line, Prostate .i 4749 to 5484 1 to 742       742/983
(75 %)
36 diff
(96.4 %id)
AA481661 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 4767 to 5240 1 to 474       474/474
(100 %)
3 diff
(99.4 %id)
BM852239 stomach .i 4794 to 5414 1 to 621       621/621
(100 %)
4 diff
(99.4 %id)
BM477229 lymph, lymphoma, cell line .i 4798 to 5589 1 to 791       791/845
(93 %)
3 diff
(99.7 %id)
CX163090 human embryonic stem cells differentiated toan early endodermal cell type .i 4806 to 5260 488 to 34   AAA   455/462
(98 %)
0 diff
(100 %id)
CN363623 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .i 4810 to 5533 1 to 723       723/723
(100 %)
6 diff
(99.2 %id)
BG574227 breast, mammary adenocarcinoma, cell line .i 4847 to 5594 1 to 748       748/766
(97 %)
8 diff
(99.0 %id)
BU609128 Human Lung Epithelial cells, lung .i 4852 to 5594 760 to 19   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 742/742
(100 %)
3 diff
(99.6 %id)
AA302728 adipose tissue, white .i 4876 to 5017 1 to 142       142/144
(98 %)
1 diff
(99.4 %id)
CN363635 embryonic stem cells, DMSO-treated H9 cellline .i 4889 to 5541 9 to 661       653/661
(98 %)
6 diff
(99.1 %id)
FN053003 breast carcinoma .i 4957 to 5079 122 to 1     Submitted on the opposite strand 122/122
(100 %)
1 diff
(99.2 %id)
BG939399 bone marrow stroma .i 4959 to 5596 658 to 21   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 638/638
(100 %)
0 diff
(100 %id)
BU619942 cell lines, Chondrosarcoma .i 4960 to 5594 653 to 19   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 635/635
(100 %)
1 diff
(99.9 %id)
BU681401 lung .i 4961 to 5596 654 to 19   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 636/636
(100 %)
1 diff
(99.9 %id)
BM998028 lung, Metastatic Chondrosarcoma .i 4964 to 5593 646 to 17   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 630/630
(100 %)
3 diff
(99.6 %id)
BQ017385 lung, Metastatic Chondrosarcoma .i 4965 to 5586 640 to 19   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 622/622
(100 %)
2 diff
(99.7 %id)
W17021 lung .i 4998 to 5310 1 to 317   fully sequenced,   317/317
(100 %)
1 diff
(99.7 %id)
BQ016486 lung, Metastatic Chondrosarcoma .i 5023 to 5596 592 to 19   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 574/574
(100 %)
2 diff
(99.7 %id)
BQ574457 Chondrosarcoma Grade II, Left Pelvis .i 5026 to 5596 588 to 19   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 570/570
(100 %)
1 diff
(99.9 %id)
BF432734 carcinoid, lung .i 5027 to 5599 573 to 1       573/573
(100 %)
2 diff
(99.7 %id)
BM728110 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .i 5044 to 5683 1 to 641   tiling clone,   641/641
(100 %)
1 diff
(99.9 %id)
FN117975 breast carcinoma .i 5095 to 5170 78 to 1     Submitted on the opposite strand 78/82
(95 %)
2 diff
(97.6 %id)
AI742172 pooled .i 5104 to 5587 484 to 1       484/484
(100 %)
0 diff
(100 %id)
DB522105 testis .i 5109 to 5591 1 to 483     Submitted on the opposite strand 483/483
(100 %)
0 diff
(100 %id)
CK825941 Pancreas, Purified pancreatic islet .i 5120 to 5600 496 to 16     Submitted on the opposite strand 481/496
(96 %)
0 diff
(100 %id)
DB518919 testis .i 5121 to 5591 1 to 471     Submitted on the opposite strand 471/471
(100 %)
0 diff
(100 %id)
AW514846 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .i 5125 to 5678 554 to 1       554/554
(100 %)
0 diff
(100 %id)
AI332651 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 5139 to 5586 461 to 14   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 448/448
(100 %)
0 diff
(100 %id)
AW341925 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .i 5146 to 5573 428 to 1       428/428
(100 %)
0 diff
(100 %id)
N20532 melanocyte .i 5165 to 5596 433 to 1       433/433
(100 %)
4 diff
(99.1 %id)
AA570317 colon, colon tumor RER+ .i 5172 to 5602 431 to 1       431/431
(100 %)
0 diff
(100 %id)
AA252175 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 5184 to 5586 403 to 1       403/403
(100 %)
0 diff
(100 %id)
AA740877 germinal center B cell .i 5194 to 5279 86 to 1       86/86
(100 %)
0 diff
(100 %id)
AI969652 malignant melanoma, metastatic to lymphnode, skin .i 5199 to 5586 388 to 1       388/388
(100 %)
0 diff
(100 %id)
AA774037   .i 5202 to 5594 393 to 1       393/393
(100 %)
0 diff
(100 %id)
AA782282 lung .i 5211 to 5597 387 to 1       387/387
(100 %)
0 diff
(100 %id)
AA481514 germinal center B cell .i 5214 to 5594 410 to 23   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 388/390
(99 %)
6 diff
(98.5 %id)
AI280802 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .i 5218 to 5587 370 to 1       370/370
(100 %)
0 diff
(100 %id)
AA243566 germinal center B cell .i 5221 to 5597 377 to 1       377/377
(100 %)
0 diff
(100 %id)
AL138404 melanoma (MeWo cell line) .i 5229 to 5594 383 to 18   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 366/366
(100 %)
1 diff
(99.8 %id)
FN155279 breast carcinoma .i 5233 to 5345 117 to 1     Submitted on the opposite strand 117/117
(100 %)
6 diff
(94.9 %id)
AI342041 pooled germ cell tumors .i 5238 to 5598 361 to 1       361/361
(100 %)
0 diff
(100 %id)
AA255428 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 5245 to 5596 352 to 1       352/352
(100 %)
0 diff
(100 %id)
AI890818 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .i 5254 to 5678 437 to 13   AAA Possibly primed on the genome, locally A rich (36/37 A in genome downstream of last aligned base) 425/425
(100 %)
0 diff
(100 %id)
AA813792   .i 5259 to 5500 242 to 1       242/242
(100 %)
0 diff
(100 %id)
AI799071 pooled .i 5260 to 5609 350 to 1       350/350
(100 %)
0 diff
(100 %id)
AW304873 brain, three pooled meningiomas .i 5260 to 5679 420 to 1       420/420
(100 %)
0 diff
(100 %id)
AA481422 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 5267 to 5679 415 to 3       413/415
(99 %)
0 diff
(100 %id)
T48154 fetal spleen, Spleen .i 5272 to 5460 1 to 189   fully sequenced,   189/189
(100 %)
0 diff
(100 %id)
N89627 lung .i 5280 to 5680 408 to 1   fully sequenced,   408/408
(100 %)
6 diff
(98.6 %id)
AA302729 adipose tissue, white .i 5293 to 5507 215 to 1       215/215
(100 %)
0 diff
(100 %id)
AA192250 muscle, skeletal muscle .i 5303 to 5434 1 to 132   fully sequenced, Submitted on the opposite strand 132/132
(100 %)
0 diff
(100 %id)
AA194659 muscle, skeletal muscle .i 5404 to 5601 200 to 1   fully sequenced, Submitted on the opposite strand 200/200
(100 %)
1 diff
(99.5 %id)
T48155 fetal spleen, Spleen .i 5430 to 5677 253 to 1   fully sequenced,   253/253
(100 %)
1 diff
(99.7 %id)
AI382490 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .i 5435 to 5586 152 to 1       152/152
(100 %)
0 diff
(100 %id)
AA016280 eye, retina .i 5457 to 5685 229 to 1   tiling clone,   229/229
(100 %)
0 diff
(100 %id)
FN138580 breast carcinoma .i 5552 to 5655 99 to 1     Submitted on the opposite strand 99/100
(99 %)
5 diff
(95.0 %id)
AK126357 trachea .j 1 to 4331 2 to 4331 exact tiling clone, available from FLJ,   4331/4331
(100 %)
3 diff
(100.0 %id)
DB240169 trachea .j 1 to 581 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
BF756356 colon .j 341 to 686 348 to 3     Submitted on the opposite strand 346/349
(99 %)
0 diff
(100 %id)
BF756389 colon .j 341 to 611 274 to 3     Submitted on the opposite strand 272/287
(94 %)
0 diff
(100 %id)
BF756963 colon .j 341 to 610 283 to 17     Submitted on the opposite strand 267/293
(91 %)
0 diff
(100 %id)
DA527488 brain .j 1306 to 1875 2 to 571   tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
DB265236 uterus .j 2851 to 3421 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
BG479480 choriocarcinoma, placenta .j 3334 to 4059 1 to 733       733/734
(99 %)
13 diff
(98.3 %id)
DB350555 trachea .j 3785 to 4331 549 to 1       549/549
(100 %)
2 diff
(99.7 %id)
DB317524 brain .j 3889 to 4326 443 to 6       438/446
(98 %)
0 diff
(100 %id)
BG619873 placenta .k 1 to 673 1 to 673   tiling clone,   673/673
(100 %)
6 diff
(99.2 %id)
BF242494 bone marrow, from acute myelogenous leukemia .k 74 to 752 31 to 723       687/959
(71 %)
42 diff
(95.7 %id)
BF678470 Prostate .k 75 to 684 23 to 632       610/805
(75 %)
23 diff
(97.2 %id)
CD642698 Embryonic Stem cells .k 77 to 802 5 to 727   tiling clone,   723/728
(99 %)
10 diff
(98.7 %id)
BF204455 muscle, rhabdomyosarcoma .k 85 to 755 21 to 684       666/930
(71 %)
19 diff
(98.0 %id)
BG485530 lung .k 85 to 674 32 to 643       606/804
(75 %)
34 diff
(95.8 %id)
CD686228 normal nasopharynx .k 259 to 823 48 to 615       568/615
(92 %)
17 diff
(97.3 %id)
CD693441 normal nasopharynx .k 259 to 760 68 to 569       502/569
(88 %)
12 diff
(97.9 %id)
CD700682 normal nasopharynx .k 259 to 771 46 to 565       520/565
(92 %)
14 diff
(97.6 %id)
CD701473 normal nasopharynx .k 259 to 865 60 to 666       607/666
(91 %)
7 diff
(99.0 %id)
CB990468 Human Placenta, placenta .k 259 to 819 49 to 615       567/833
(68 %)
18 diff
(97.9 %id)
CF593973 Human Placenta, placenta .k 259 to 971 54 to 772   tiling clone,   719/835
(86 %)
16 diff
(98.1 %id)
BG828970 muscle, rhabdomyosarcoma .k 260 to 829 1 to 569       569/569
(100 %)
7 diff
(98.8 %id)
BM807453 brain, hippocampus .k 262 to 850 92 to 682       591/1255
(47 %)
39 diff
(96.9 %id)
BE737594 brain, glioblastoma .k 266 to 879 1 to 608       610/830
(73 %)
37 diff
(95.6 %id)
CD689732 normal nasopharynx .k 268 to 619 70 to 421       352/421
(83 %)
12 diff
(97.2 %id)
BE901091.
matches multiple genes
choriocarcinoma, placenta, Placenta, choriocarcinoma .k 268 to 965 1 to 698   available from MGC, also hits gene PRELID1 698/698
(100 %)
8 diff
(98.9 %id)
BI836305 pooled pancreas and spleen .k 268 to 998 18 to 747       730/747
(97 %)
10 diff
(98.7 %id)
TI_57163563   .k 268 to 998 48 to 777       730/777
(93 %)
10 diff
(98.8 %id)
TI_45209748   .k 268 to 937 147 to 817       671/817
(82 %)
9 diff
(98.9 %id)
TI_45210860   .k 268 to 814 114 to 660       547/660
(82 %)
9 diff
(98.7 %id)
TI_45215965   .k 268 to 989 111 to 830       720/830
(86 %)
10 diff
(98.8 %id)
BE537860 cervix .k 272 to 885 1 to 621       621/740
(83 %)
10 diff
(98.7 %id)
BE884239 leiomyosarcoma, uterus .k 290 to 934 1 to 646       646/646
(100 %)
2 diff
(99.7 %id)
DB485018 hypothalamus .k 320 to 777 1 to 459       459/459
(100 %)
1 diff
(99.8 %id)
DB490836 hypothalamus .k 320 to 744 1 to 424       424/425
(99 %)
4 diff
(99.1 %id)
BM873344   .k 333 to 860 1 to 529       527/529
(99 %)
1 diff
(99.9 %id)
AA081973   .k 379 to 724 1 to 348       348/348
(100 %)
5 diff
(98.6 %id)
BU686565 lung, Primary Lung Epithelial Cells .k 412 to 739 19 to 349     Submitted on the opposite strand 331/331
(100 %)
5 diff
(98.5 %id)
T19153   .k 418 to 740 1 to 326       326/331
(98 %)
14 diff
(95.8 %id)
DN912328   .k 486 to 677 1 to 192       192/192
(100 %)
3 diff
(98.5 %id)
BE770021 prostate_tumor .k 498 to 773 278 to 1       278/279
(99 %)
8 diff
(97.2 %id)
AV750512 Pituitary .k 503 to 837 1 to 326       330/328
(100 %)
13 diff
(96.1 %id)
AV750859 Pituitary .k 503 to 851 1 to 346       346/346
(100 %)
17 diff
(95.1 %id)
CN371671 embryonic stem cells, cell lines H1, H7, andH9 .k 589 to 1246 1 to 658   tiling clone,   658/658
(100 %)
2 diff
(99.7 %id)
BX473146   .l 1 to 637 4 to 640 exact tiling clone,   640/640
(100 %)
2 diff
(99.7 %id)
DC311409 alzheimer cortex .m 1 to 565 1 to 564   tiling clone,   564/564
(100 %)
2 diff
(99.7 %id)
BG703001 brain, hippocampus .m 28 to 711 1 to 685 G172R G173R N174* tiling clone,   685/685
(100 %)
6 diff
(99.2 %id)
DB483421 hippocampus .m 33 to 490 1 to 458       458/458
(100 %)
1 diff
(99.8 %id)
DC406202 thymus .n 1 to 566 1 to 566   tiling clone,   566/566
(100 %)
1 diff
(99.9 %id)
CN278936 embryonic stem cells, cell lines H1, H7, andH9 .n 140 to 881 1 to 742 Q174H tiling clone,   742/742
(100 %)
1 diff
(99.9 %id)
DC299069   .o 1 to 585 1 to 586 exact tiling clone,   586/586
(100 %)
2 diff
(99.7 %id)
DC355413   .p 1 to 564 1 to 564 C54A P55H P56L P57L C58V ... tiling clone,   566/564
(100 %)
2 diff
(99.7 %id)
DC397179 testis .q 1 to 569 1 to 570 exact tiling clone,   570/574
(99 %)
3 diff
(99.5 %id)
DB123200 thymus .r -9 to 529 2 to 540 exact tiling clone, capped   539/539
(100 %)
3 diff
(99.5 %id)
CD704097 normal nasopharynx .s 1 to 348 17 to 363 exact tiling clone,   347/363
(95 %)
6 diff
(98.4 %id)
BX488625   .t-u 1 to 627 1 to 627   tiling clone,   627/627
(100 %)
3 diff
(99.6 %id)
F07989 brain, total brain .t-u 10 to 279 1 to 270   tiling clone,   270/270
(100 %)
3 diff
(98.9 %id)
R24739 whole brain .t-u 11 to 350 1 to 351       351/363
(96 %)
14 diff
(96.2 %id)
H19035 whole brain .t-u 11 to 531 1 to 526   tiling clone,   526/530
(99 %)
13 diff
(97.6 %id)
R16957 liver and spleen .t-u 36 to 399 1 to 372       372/375
(99 %)
15 diff
(96.0 %id)
AI095803 uterus .t-u 562 to 1016 455 to 1 exact tiling clone,   455/455
(100 %)
1 diff
(99.8 %id)
AI435870 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .t-u 566 to 1006 441 to 1 exact     441/441
(100 %)
1 diff
(99.8 %id)
AI274998 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .t-u 577 to 1006 430 to 1 exact     430/430
(100 %)
0 diff
(100 %id)
AA235124 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .t-u 600 to 993 1 to 394 exact fully sequenced,   394/394
(100 %)
0 diff
(100 %id)
H19326 whole brain .t-u 611 to 1009 415 to 6 W8L T9D I10N I11H S12*     410/416
(98 %)
0 diff
(100 %id)
R16902 liver and spleen .t-u 611 to 1007 415 to 1 W8L T9D I10N I11H S12*     415/428
(96 %)
27 diff
(93.7 %id)
F04242 brain, total brain .t-u 721 to 1005 285 to 1 T13X V27X     285/285
(100 %)
1 diff
(99.7 %id)
AA234950 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .t-u 769 to 1006 238 to 1   fully sequenced,   238/238
(100 %)
0 diff
(100 %id)
DB281214 uterus .u-u 1 to 556 2 to 557   tiling clone, capped   556/556
(100 %)
0 diff
(100 %id)
BE973786 Prostate .u-u 262 to 917 1 to 643       643/839
(76 %)
26 diff
(97.0 %id)
BF769540 epid_tumor .u-u 424 to 916 1 to 496   tiling clone,   496/496
(100 %)
9 diff
(98.2 %id)
DA091673 cerebellum .va-u 1 to 574 2 to 576 H40S L41F C42M A43C H44T tiling clone, capped   575/575
(100 %)
2 diff
(99.7 %id)
AV752103 Pituitary .va-u 111 to 744 1 to 627   tiling clone,   627/660
(95 %)
26 diff
(96.1 %id)
BG426238 Kidney .vb -10 to 651 1 to 667 A2R P3L V4C V5D T6R ... tiling clone,   665/885
(75 %)
36 diff
(96.0 %id)
BP873393 embryonal kidney .vc 1 to 576 2 to 577 exact tiling clone,   582/582
(100 %)
2 diff
(99.7 %id)
DC397781 testis .vd 1 to 546 1 to 546 exact tiling clone,   546/546
(100 %)
2 diff
(99.7 %id)
DB490848 hypothalamus .ve 1 to 427 1 to 427 exact tiling clone,   427/427
(100 %)
0 diff
(100 %id)
DB502957 hypothalamus .ve 2 to 471 1 to 470   tiling clone,   470/470
(100 %)
0 diff
(100 %id)
AW062358 colon .vf-u 1 to 453 456 to 3 exact tiling clone,   454/456
(99 %)
0 diff
(100 %id)
DW441982 Liver .vh 1 to 168 19 to 186 exact tiling clone, AAA   173/186
(93 %)
7 diff
(96.3 %id)
DW442224 Liver .vh 1 to 180 19 to 199 exact AAA   186/199
(93 %)
12 diff
(94.0 %id)
DW447263 Liver .vh 16 to 167 21 to 172 exact AAA   152/172
(88 %)
0 diff
(100 %id)
BE699337 nervous_normal Gene RBPJ, variant not shown         This clone was ignored    
AA092442   Gene RBPJ, variant not shown              
D14041   Gene RBPJ, variant not shown         Suspected internal deletion, this clone was ignored    
95 other accessions, mainly redundant or of lesser quality, also belong to this gene but are not reported.
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t-u, .u-u, .va-u, .vb, .vc, .vd, .ve, .vf-u, .vg-u, .vh Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI