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Gene RBM20TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
33 supporting clones for gene RBM20 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
EU822950   .a 1 to 7233 1 to 7233 exact tiling clone,   7233/7233
(100 %)
0 diff
(100 %id)
NM_001134363.1   .a 1 to 7233 1 to 7233 exact RefSeq,   7233/7233
(100 %)
0 diff
(100 %id)
DC324325 brain .a 3124 to 3715 1 to 593       593/593
(100 %)
1 diff
(99.9 %id)
BX648563 Liver .a 3136 to 7232 1 to 4097   available from DKFZ, AAA   4097/4097
(100 %)
2 diff
(100.0 %id)
AK302802 testis .a 3184 to 4529 1 to 1346       1346/1346
(100 %)
1 diff
(100.0 %id)
DC402691 testis .a 3184 to 3675 1 to 492       492/492
(100 %)
0 diff
(100 %id)
AL832084 heart .a 3659 to 7231 1 to 3573   available from DKFZ, AAA   3573/3573
(100 %)
6 diff
(99.9 %id)
BM562762 duodenal adenocarcinoma, cell line, small intestine .a 4075 to 5023 1 to 965       965/1017
(94 %)
29 diff
(97.2 %id)
AA668300   .a 4193 to 4609 422 to 1       422/422
(100 %)
8 diff
(98.2 %id)
BU607932 Human Lung Epithelial cells, lung .a 5330 to 6032 717 to 19   AAA   699/703
(99 %)
4 diff
(99.5 %id)
BU622156 Cell Line, Chondrosarcoma .a 5335 to 6032 719 to 19   AAA   701/701
(100 %)
4 diff
(99.5 %id)
CB044335 colon, juvenile granulosa tumor .a 6030 to 6611 36 to 617       582/617
(94 %)
6 diff
(99.1 %id)
TI_149280489   .a 6606 to 7228 33 to 653     Submitted on the opposite strand 621/762
(81 %)
21 diff
(97.3 %id)
BU679256 lung, Primary Lung Epithelial Cells .a 6616 to 7185 3 to 571     Submitted on the opposite strand 569/571
(99 %)
6 diff
(99.0 %id)
BX103013 parathyroid gland, parathyroid tumor .a 6618 to 7231 618 to 5     Submitted on the opposite strand 614/618
(99 %)
0 diff
(100 %id)
G36754   .a 6633 to 7034 1 to 406       406/406
(100 %)
7 diff
(98.3 %id)
N91453 parathyroid gland, parathyroid tumor .a 6633 to 7034 1 to 406     Submitted on the opposite strand 406/406
(100 %)
7 diff
(98.3 %id)
W20054 parathyroid gland, parathyroid tumor .a 6722 to 7232 544 to 18   AAA Submitted on the opposite strand 527/557
(94 %)
22 diff
(96.1 %id)
CB044334 colon, juvenile granulosa tumor .a 6735 to 7234 536 to 37   tiling clone, AAA   500/500
(100 %)
10 diff
(98.0 %id)
AW383130 head_neck .a 6782 to 7108 327 to 1       327/327
(100 %)
1 diff
(99.7 %id)
AI539118 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 6797 to 7232 456 to 21   AAA   436/436
(100 %)
3 diff
(99.4 %id)
AI866754 brain, tumor, 5 pooled (see description) .a 6830 to 7233 405 to 2       404/405
(99 %)
0 diff
(100 %id)
AA195793 muscle, skeletal muscle .a 6861 to 7099 1 to 239       239/239
(100 %)
1 diff
(99.6 %id)
CK429431 eye, lacrimal gland .a 6891 to 7172 1 to 282       282/282
(100 %)
0 diff
(100 %id)
AI143495 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 6893 to 7232 340 to 1       340/340
(100 %)
1 diff
(99.8 %id)
AI378995   .a 7019 to 7232 221 to 8       214/221
(96 %)
0 diff
(100 %id)
DB063957 testis .b 1 to 565 2 to 566 exact tiling clone, capped   565/565
(100 %)
0 diff
(100 %id)
AL121071 melanoma (MeWo cell line) .c 1 to 244 1 to 244   tiling clone, fully sequenced,   244/244
(100 %)
1 diff
(99.6 %id)
AL121072 melanoma (MeWo cell line) .c 214 to 605 392 to 1   tiling clone, fully sequenced,   392/392
(100 %)
2 diff
(99.5 %id)
DB157384 thymus .d 1 to 574 2 to 574   tiling clone, capped   573/573
(100 %)
1 diff
(99.9 %id)
DB221512 trachea .d 76 to 609 2 to 533   capped   532/532
(100 %)
4 diff
(99.3 %id)
DB275322 uterus .d 338 to 904 2 to 568 exact tiling clone, capped   567/567
(100 %)
1 diff
(99.9 %id)
DA458338 tongue, tumor tissue .e 1 to 572 2 to 573 exact tiling clone, capped   572/572
(100 %)
0 diff
(100 %id)
DB314385 tongue, tumor tissue Gene RBM20, variant not shown         Suspected internal deletion, this clone was ignored    
DA456423 tongue, tumor tissue Gene RBM20, variant not shown       capped Suspected internal deletion, this clone was ignored    
DB228565 trachea Gene RBM20, variant not shown       capped Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC