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Gene RASSF6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
110 supporting clones for gene RASSF6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BX957171   .a -10 to 578 1 to 589       589/589
(100 %)
2 diff
(99.7 %id)
AK126346 trachea .a 1 to 4322 2 to 4323 exact tiling clone, available from FLJ,   4323/4323
(100 %)
5 diff
(99.9 %id)
NM_201431.1   .a 1 to 4322 2 to 4323 exact RefSeq,   4323/4323
(100 %)
4 diff
(100.0 %id)
DB238720 trachea .a 1 to 583 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DB233635 trachea .a 19 to 607 2 to 590   capped   589/589
(100 %)
2 diff
(99.7 %id)
DB350463 trachea .a 3761 to 4322 562 to 1       562/562
(100 %)
1 diff
(99.9 %id)
CR749283 small intestine .b 1 to 5125 1 to 5125 Q116* tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 5125/5125
(100 %)
9 diff
(99.9 %id)
BX424428 placenta .b 23 to 461 1 to 439       439/439
(100 %)
8 diff
(98.2 %id)
BX438988 placenta .b 23 to 1027 1 to 999   tiling clone,   999/1002
(99 %)
12 diff
(98.9 %id)
CB994269 placenta, pre-eclamptic placenta .b 31 to 580 28 to 586       557/847
(65 %)
43 diff
(95.0 %id)
NM_177532.3   .b 154 to 4421 1 to 4268 exact RefSeq,   4268/4268
(100 %)
3 diff
(100.0 %id)
BU930079 Prostate .b 159 to 884 1 to 730       730/790
(92 %)
12 diff
(98.5 %id)
CR747855 bladder, carcinoma, cell line .b 167 to 577 1 to 411       411/411
(100 %)
2 diff
(99.6 %id)
AY217664   .b 187 to 1713 1 to 1527 exact tiling clone,   1527/1527
(100 %)
0 diff
(100 %id)
BE567231 bladder, carcinoma, cell line .b 187 to 755 1 to 572       572/572
(100 %)
14 diff
(97.6 %id)
TI_1948224625   .b 327 to 567 123 to 363       241/268
(89 %)
6 diff
(97.8 %id)
TI_1948224929   .b 327 to 652 128 to 453       326/353
(92 %)
6 diff
(98.4 %id)
TI_1948225589   .b 327 to 581 127 to 380       254/281
(90 %)
6 diff
(97.9 %id)
N50355 multiple sclerosis lesions .b 805 to 979 1 to 176       176/176
(100 %)
1 diff
(99.5 %id)
BX450615 placenta .b 846 to 1581 1 to 737       737/820
(89 %)
26 diff
(96.9 %id)
BF335146 colon .b 847 to 1263 5 to 420       416/420
(99 %)
10 diff
(97.7 %id)
BX450616 placenta .b 861 to 1731 1 to 872       872/872
(100 %)
8 diff
(99.1 %id)
BG289831 bladder, transitional cell papilloma, cell line .b 997 to 1723 1 to 719       719/731
(98 %)
13 diff
(98.3 %id)
BU941996 mixed (pool of 40 RNAs) .b 1044 to 1798 1 to 761       761/761
(100 %)
13 diff
(98.3 %id)
BE010437 breast_normal .b 1087 to 1315 234 to 7     Submitted on the opposite strand 228/234
(97 %)
0 diff
(100 %id)
N51576 multiple sclerosis lesions .b 1910 to 2360 458 to 1       458/462
(99 %)
7 diff
(98.5 %id)
TI_154149130   .b 2174 to 2893 78 to 794       717/797
(89 %)
37 diff
(95.4 %id)
CV329806 uterus_tumor .b 2282 to 2718 1 to 438       438/438
(100 %)
6 diff
(98.7 %id)
AA806780 germinal center B cell .b 2376 to 2796 422 to 2       421/422
(99 %)
0 diff
(100 %id)
DA859107 placenta .b 2622 to 3159 2 to 538   capped   537/537
(100 %)
1 diff
(99.9 %id)
BQ787222 Pancreas, Purified pancreatic islet .b 3001 to 3279 1 to 279       279/279
(100 %)
10 diff
(96.5 %id)
BQ787166 Pancreas, Purified pancreatic islet .b 3013 to 3663 1 to 651       651/651
(100 %)
1 diff
(99.9 %id)
CV572712 cornea, eye .b 3059 to 3704 1 to 646   tiling clone,   646/646
(100 %)
0 diff
(100 %id)
CV575500 cornea, eye .b 3079 to 3688 1 to 610       610/610
(100 %)
0 diff
(100 %id)
CV572048 cornea, eye .b 3088 to 3650 1 to 563       563/563
(100 %)
0 diff
(100 %id)
BX426063 thymus .b 3151 to 4293 1 to 1132       1132/1132
(100 %)
16 diff
(98.6 %id)
BX437347 thymus .b 3151 to 3975 1 to 825       825/825
(100 %)
0 diff
(100 %id)
CA942332 Pancreas, Purified pancreatic islet .b 3709 to 3999 3 to 291   fully sequenced,   289/291
(99 %)
6 diff
(98.0 %id)
BX103114 placenta .b 3718 to 4450 1 to 733       733/733
(100 %)
4 diff
(99.5 %id)
N41418 placenta .b 3732 to 4242 1 to 511       511/512
(99 %)
1 diff
(99.9 %id)
AW151616 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .b 3925 to 4423 499 to 1       499/499
(100 %)
1 diff
(99.8 %id)
AA524952   .b 3935 to 4442 509 to 3       507/514
(98 %)
9 diff
(98.3 %id)
AA524797   .b 3960 to 4430 470 to 1   tiling clone,   470/491
(95 %)
12 diff
(97.6 %id)
CA867038 Pancreas, Purified pancreatic islet .b 3969 to 4420 452 to 1   fully sequenced,   452/452
(100 %)
1 diff
(99.8 %id)
BG290430 bladder, transitional cell papilloma, cell line .b 3976 to 4603 1 to 638       638/643
(99 %)
18 diff
(97.3 %id)
BM923326 pooled colon, kidney, stomach .b 4051 to 5018 12 to 994       983/1064
(92 %)
10 diff
(99.1 %id)
AA921679 2 pooled tumors (clear cell type), Kidney .b 4439 to 4816 378 to 1       378/378
(100 %)
0 diff
(100 %id)
CV573911 cornea, eye .b 4542 to 5145 1 to 604       604/604
(100 %)
0 diff
(100 %id)
BG288424 bladder, transitional cell papilloma, cell line .b 4705 to 5492 1 to 786   tiling clone,   786/922
(85 %)
20 diff
(97.9 %id)
BG291982 bladder, transitional cell papilloma, cell line .b 5084 to 5856 1 to 768       768/769
(99 %)
17 diff
(97.8 %id)
BP418664 small intestine .b 5194 to 5643 1 to 450   tiling clone, Submitted on the opposite strand 450/450
(100 %)
5 diff
(98.9 %id)
AW967587   .b 5303 to 5896 630 to 35     Submitted on the opposite strand 596/630
(94 %)
0 diff
(100 %id)
TI_154146701   .b 5305 to 5890 675 to 91   tiling clone, Submitted on the opposite strand 585/591
(98 %)
0 diff
(100 %id)
AA419416 germinal center B cell .b 5308 to 5447 224 to 363     Suspected internal deletion, possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 363/363
(100 %)
10 diff
(97.3 %id)
DB328977 placenta .b 5373 to 5899 528 to 1       528/528
(100 %)
4 diff
(99.3 %id)
AW070877 pooled .b 5391 to 5881 491 to 1       491/491
(100 %)
1 diff
(99.8 %id)
AW207045   .b 5428 to 5879 466 to 15   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 452/452
(100 %)
2 diff
(99.6 %id)
AW469832 pooled .b 5464 to 5879 416 to 1       416/416
(100 %)
3 diff
(99.3 %id)
AI356937 lymph node, lymphoma, follicular mixed small and largecell .b 5475 to 5899 425 to 1       425/425
(100 %)
1 diff
(99.8 %id)
AW173502 moderately-differentiated endometrialadenocarcinoma, 3 pooled tumors, uterus .b 5475 to 5899 436 to 12   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 425/425
(100 %)
1 diff
(99.8 %id)
AW299333 Kidney .b 5475 to 5899 425 to 1       425/425
(100 %)
4 diff
(99.1 %id)
AA766314 germinal center B cell .b 5496 to 5916 431 to 11   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 421/421
(100 %)
11 diff
(97.4 %id)
AA831027 germinal center B cell .b 5498 to 5896 412 to 14   AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 399/399
(100 %)
1 diff
(99.8 %id)
AA251072 germinal center B cell .b 5518 to 5861 348 to 1     Submitted on the opposite strand 348/348
(100 %)
4 diff
(98.9 %id)
AA991192 2 pooled tumors (clear cell type), Kidney .b 5524 to 5902 382 to 4       379/382
(99 %)
0 diff
(100 %id)
AA250879 germinal center B cell .b 5526 to 5861 338 to 1     Submitted on the opposite strand 338/338
(100 %)
2 diff
(99.5 %id)
AA761270 germinal center B cell .b 5531 to 5895 367 to 3       365/367
(99 %)
0 diff
(100 %id)
AI979179 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .b 5538 to 5897 360 to 1       360/360
(100 %)
1 diff
(99.8 %id)
AA482009 germinal center B cell .b 5556 to 5879 335 to 12   AAA Suspected internal deletion, possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 324/324
(100 %)
1 diff
(99.7 %id)
AW407403 lymph .b 5577 to 5895 326 to 8     Submitted on the opposite strand 319/326
(97 %)
0 diff
(100 %id)
AI579909 colon, moderately-differentiated adenocarcinoma .b 5691 to 6015 350 to 26   tiling clone, AAA Possibly primed on the genome, locally A rich (13/13 A in genome downstream of last aligned base) 325/325
(100 %)
1 diff
(99.7 %id)
AY217665   .c 1 to 1360 1 to 1360 exact tiling clone,   1360/1360
(100 %)
0 diff
(100 %id)
BC058835 Prostate .d 1 to 2713 1 to 2713 S131P tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 2713/2713
(100 %)
6 diff
(99.8 %id)
EL735838 mixed .d 170 to 805 1 to 635       635/637
(99 %)
5 diff
(99.3 %id)
TI_1948224930   .d 170 to 907 124 to 865       742/1197
(61 %)
19 diff
(98.5 %id)
TI_1948225264   .d 170 to 1070 129 to 1026       898/1476
(60 %)
17 diff
(98.9 %id)
TI_1948225265   .d 170 to 869 127 to 826       700/1284
(54 %)
9 diff
(99.3 %id)
TI_1948225590   .d 170 to 996 125 to 960       836/1195
(69 %)
23 diff
(98.1 %id)
TI_1948224932   .d 172 to 1071 1032 to 125       908/1272
(71 %)
23 diff
(98.2 %id)
TI_1948224931   .d 209 to 1071 994 to 125       868/1348
(64 %)
28 diff
(98.0 %id)
TI_1948225267   .d 224 to 1071 977 to 127       851/1303
(65 %)
11 diff
(99.2 %id)
TI_1948224628   .d 303 to 1071 896 to 129       768/1205
(63 %)
12 diff
(99.1 %id)
TI_1948225266   .d 306 to 1071 895 to 123       773/1350
(57 %)
23 diff
(98.3 %id)
TI_1948224627   .d 307 to 1071 889 to 124       766/1365
(56 %)
22 diff
(98.4 %id)
TI_1948225591   .d 307 to 1071 886 to 124       763/1326
(57 %)
20 diff
(98.5 %id)
TI_1948225592   .d 317 to 1071 881 to 122       760/1327
(57 %)
12 diff
(99.1 %id)
AK002032 placenta .e-u 1 to 2157 2 to 2158 exact tiling clone, available from FLJ,   2158/2158
(100 %)
0 diff
(100 %id)
AU137808 placenta .e-u 1 to 881 2 to 873 exact capped   872/873
(99 %)
18 diff
(98.0 %id)
AW812707 stomach .e-u 484 to 820 1 to 337       337/337
(100 %)
11 diff
(96.8 %id)
AA280131 germinal center B cell .e-u 858 to 1121 1 to 264       264/264
(100 %)
0 diff
(100 %id)
AU157324 placenta .e-u 1690 to 2157 468 to 1       468/474
(98 %)
16 diff
(96.7 %id)
AA280132 germinal center B cell .e-u 1834 to 2153 320 to 1       320/320
(100 %)
0 diff
(100 %id)
BF175678 blood .e-u 2122 to 2307 1 to 186   tiling clone,   186/186
(100 %)
3 diff
(98.4 %id)
R71016 placenta .f-u 1 to 382 1 to 387 exact tiling clone,   387/387
(100 %)
5 diff
(98.8 %id)
BX496993 Liver .f-u 115 to 741 1 to 626   tiling clone,   626/626
(100 %)
2 diff
(99.7 %id)
CN267759 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .f-u 201 to 671 1 to 471       471/471
(100 %)
0 diff
(100 %id)
AW976094   .f-u 485 to 1092 609 to 1     Submitted on the opposite strand 609/613
(99 %)
7 diff
(98.9 %id)
AI016998 Kidney .f-u 496 to 667 172 to 1       172/172
(100 %)
0 diff
(100 %id)
BE326978 Kidney .f-u 567 to 1096 530 to 1   tiling clone,   530/530
(100 %)
4 diff
(99.3 %id)
AA748023 germinal center B cell .f-u 643 to 1102 460 to 1       460/460
(100 %)
4 diff
(99.2 %id)
AI769016 pooled .f-u 707 to 1099 393 to 1       393/393
(100 %)
3 diff
(99.3 %id)
AA837412 germinal center B cell .f-u 713 to 1102 390 to 1       390/390
(100 %)
4 diff
(99.0 %id)
AW137911   .f-u 726 to 1093 385 to 18   AAA Possibly primed on the genome, locally A rich (9/9 A in genome downstream of last aligned base) 368/368
(100 %)
1 diff
(99.8 %id)
G36465   .f-u 748 to 1198 458 to 1     Submitted on the opposite strand 458/462
(99 %)
7 diff
(98.5 %id)
N52073 multiple sclerosis lesions .f-u 752 to 1198 450 to 1       450/450
(100 %)
5 diff
(98.9 %id)
AA760769 germinal center B cell .f-u 757 to 1102 346 to 1       346/346
(100 %)
4 diff
(98.9 %id)
AI167789 parathyroid gland, parathyroid tumor .f-u 939 to 1333 399 to 5   tiling clone,   395/399
(98 %)
0 diff
(100 %id)
BU429414 lymph .f-u 1012 to 1241 8 to 237       230/237
(97 %)
6 diff
(97.5 %id)
BU959014 mixed (pool of 40 RNAs) .g 1 to 689 1 to 696 exact tiling clone,   696/805
(86 %)
18 diff
(97.8 %id)
BX100520 pooled .g 580 to 1058 1 to 479   tiling clone,   479/479
(100 %)
1 diff
(99.8 %id)
AI377856 pooled .g 649 to 1107 460 to 1   tiling clone,   460/460
(100 %)
4 diff
(99.2 %id)
DB123002 thymus .h-u 1 to 559 2 to 560 exact tiling clone, capped   559/559
(100 %)
2 diff
(99.7 %id)
AW085201 pooled .h-u 313 to 707 412 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 395/395
(100 %)
6 diff
(98.5 %id)
BF676427 Prostate .i-u 1 to 637 1 to 637 P2H F3T P4F F5S D6F ... tiling clone,   637/880
(72 %)
35 diff
(96.1 %id)
CR738523 germinal center B cell Gene RASSF6, variant not shown         Suspected internal deletion, this clone was ignored    
AA280294 germinal center B cell Gene RASSF6, variant not shown         Suspected internal deletion, this clone was ignored    
AA280572 germinal center B cell Gene RASSF6, variant not shown         Suspected internal deletion, this clone was ignored    
DB153530 thymus Gene RASSF6, variant not shown       capped This clone was ignored    
DB346305 thymus Gene RASSF6, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e-u, .f-u, .g, .h-u, .i-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC