To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene RAPSNTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
38 supporting clones for gene RAPSN back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF449218   .a 1 to 1671 1 to 1671 exact tiling clone,   1671/1671
(100 %)
2 diff
(99.9 %id)
NM_005055.3   .a 1 to 1664 1 to 1664 exact RefSeq,   1664/1664
(100 %)
0 diff
(100 %id)
BE299279 muscle, rhabdomyosarcoma .a 28 to 623 31 to 639       608/639
(95 %)
6 diff
(99.1 %id)
BM724745 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 29 to 766 1 to 738     Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 738/738
(100 %)
2 diff
(99.8 %id)
BF305136 muscle, rhabdomyosarcoma .a 36 to 743 1 to 699       699/723
(96 %)
23 diff
(96.9 %id)
BX391753 Placenta Cot 25-normalized .a 38 to 819 800 to 1       800/812
(98 %)
23 diff
(97.2 %id)
DA821974 pericardium .a 44 to 612 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA824061 pericardium .a 44 to 617 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA897184 skeletal muscle .a 44 to 612 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
DA898735 skeletal muscle .a 44 to 560 2 to 522   capped   521/521
(100 %)
4 diff
(99.3 %id)
DA899976 skeletal muscle .a 44 to 565 2 to 523   capped   522/522
(100 %)
0 diff
(100 %id)
DA900125 skeletal muscle .a 44 to 601 2 to 558   capped   557/557
(100 %)
2 diff
(99.7 %id)
DA900315 skeletal muscle .a 44 to 550 2 to 508   capped   507/507
(100 %)
1 diff
(99.9 %id)
DA900461 skeletal muscle .a 44 to 610 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
AA442720   .a 55 to 552 1 to 497       497/498
(99 %)
16 diff
(96.8 %id)
BE295236 muscle, rhabdomyosarcoma .a 55 to 746 1 to 697       697/700
(99 %)
13 diff
(98.2 %id)
BF304907 muscle, rhabdomyosarcoma .a 71 to 872 1 to 787       785/788
(99 %)
37 diff
(95.4 %id)
BE299731 muscle, rhabdomyosarcoma .a 92 to 852 1 to 756       758/986
(76 %)
13 diff
(98.7 %id)
AA449902   .a 107 to 558 13 to 463       451/463
(97 %)
7 diff
(98.5 %id)
BX108953   .a 108 to 752 1 to 647       647/660
(98 %)
8 diff
(98.8 %id)
CV026107 mixed .a 215 to 862 1 to 648       648/648
(100 %)
1 diff
(99.9 %id)
DA766978 tongue .a 496 to 1054 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
BX398774 Placenta Cot 25-normalized .a 601 to 1599 1001 to 7       996/1064
(93 %)
28 diff
(97.4 %id)
BM725200 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 645 to 1211 1 to 567   tiling clone, fully sequenced, Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 567/567
(100 %)
1 diff
(99.9 %id)
BX392882 Placenta Cot 25-normalized .a 770 to 1657 902 to 4       899/908
(99 %)
19 diff
(98.0 %id)
BU741397 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1063 to 1664 620 to 19   AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 602/602
(100 %)
3 diff
(99.6 %id)
AW573099 pooled .a 1103 to 1664 571 to 9       563/571
(98 %)
8 diff
(98.6 %id)
BM678213 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .a 1150 to 1664 533 to 19   tiling clone, fully sequenced, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 515/515
(100 %)
0 diff
(100 %id)
AA449846   .a 1191 to 1664 479 to 8       472/480
(98 %)
9 diff
(98.2 %id)
AI282041   .a 1251 to 1664 416 to 4       413/418
(98 %)
11 diff
(97.4 %id)
NM_032645.3   .b 1 to 1487 1 to 1487 exact RefSeq, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 1487/1487
(100 %)
0 diff
(100 %id)
BC004196 Muscle, rhabdomyosarcoma .b 36 to 1487 1 to 1452 Q8K tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 1452/1452
(100 %)
2 diff
(99.9 %id)
TI_1948122891   .b 215 to 638 126 to 550   fully sequenced,   425/550
(77 %)
7 diff
(98.8 %id)
TI_1948123191   .b 511 to 1275 898 to 127       772/1331
(58 %)
23 diff
(98.3 %id)
TI_1948122892   .b 608 to 1275 807 to 126   fully sequenced,   682/807
(84 %)
4 diff
(99.6 %id)
AK310002 skeletal muscle .c 1 to 1407 2 to 1408 exact tiling clone,   1408/1408
(100 %)
1 diff
(100.0 %id)
BU689638 Human Lung Epithelial cells, lung .d-u 1 to 676 694 to 19 K8X V9G I10H R11* tiling clone, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 676/676
(100 %)
2 diff
(99.8 %id)
AI269163 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 1 to 405 403 to 1 Y5S D6T S7P A8P M9* tiling clone,   403/403
(100 %)
4 diff
(99.1 %id)
BQ576358 Chondrosarcoma Grade II, Left Pelvis .f-u 1 to 771 788 to 19 P41L T42P L43C C44A F45S ... tiling clone, AAA Possibly primed on the genome, locally A rich (15/17 A in genome downstream of last aligned base) 770/770
(100 %)
4 diff
(99.5 %id)
AA214040.
matches multiple genes
muscle, skeletal muscle .f-u 289 to 743 472 to 1     also hits gene CMYA5 472/486
(97 %)
23 diff
(95.3 %id)
AA214254.
matches multiple genes
muscle, skeletal muscle .g-u 1 to 386 1 to 391 I14D Q15T P16A D17* tiling clone, also hits gene MYH1 391/393
(99 %)
17 diff
(95.7 %id)
Z33905 muscle, leg Gene RAPSN, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d-u, .e, .f-u, .g-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI