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Gene FNIP1andRAPGEF6TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
406 supporting clones for gene FNIP1andRAPGEF6 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AF117947   .a 1 to 6376 8 to 6384 S1223I S1224I E1225* tiling clone, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 6377/6384
(99 %)
9 diff
(99.9 %id)
N42885.
matches multiple genes
melanocyte .a 45 to 247 1 to 202     also hits gene ANXA2 202/203
(99 %)
4 diff
(98.1 %id)
BG207129   .a 283 to 653 1 to 371       371/371
(100 %)
1 diff
(99.8 %id)
TI_2194697432   .a 599 to 1724 1 to 1109       1077/1216
(88 %)
26 diff
(97.9 %id)
CN311916 embryonic stem cells, DMSO-treated H9 cellline .a 778 to 1074 1 to 297       297/297
(100 %)
0 diff
(100 %id)
BP241561 Liver .a 1068 to 1637 1 to 570       570/570
(100 %)
3 diff
(99.5 %id)
TI_2194697364   .a 1103 to 2237 8 to 1128       1121/1295
(86 %)
16 diff
(98.8 %id)
TI_1968233979   .a 1104 to 2188 9 to 1082       1074/1279
(83 %)
16 diff
(98.8 %id)
BX954258   .a 1196 to 1922 1 to 726       726/726
(100 %)
2 diff
(99.8 %id)
DA571455 whole embryo, mainly head .a 1394 to 2219 2 to 826   capped   825/826
(99 %)
11 diff
(98.7 %id)
BX646700   .a 1507 to 2052 1 to 546       546/546
(100 %)
1 diff
(99.9 %id)
BP360374 thalamus .a 1563 to 2143 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
CN311917 embryonic stem cells, cell lines H1, H7, andH9 .a 1701 to 2428 1 to 729       729/729
(100 %)
1 diff
(99.9 %id)
TI_2194697357   .a 1771 to 2880 21 to 1121       1101/1273
(86 %)
19 diff
(98.6 %id)
BG954289 colon .a 1849 to 2121 274 to 2       273/274
(99 %)
2 diff
(99.3 %id)
BG954288 colon .a 1898 to 2111 217 to 4       214/217
(98 %)
4 diff
(98.2 %id)
TI_2194697460   .a 2113 to 3231 16 to 1119       1104/1273
(86 %)
22 diff
(98.3 %id)
BP279251   .a 2201 to 2811 1 to 611       611/611
(100 %)
0 diff
(100 %id)
CF142770 lymph .a 2219 to 2514 1 to 296       296/296
(100 %)
7 diff
(97.7 %id)
DA992413 synovial membrane tissue from rheumatioidarthritis .a 2479 to 3028 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB358311 whole embryo, mainly head .a 2506 to 3012 562 to 57       506/562
(90 %)
20 diff
(96.5 %id)
BU195635 leiomyosarcoma, uterus .a 2529 to 3289 1 to 765       765/895
(85 %)
25 diff
(97.3 %id)
AW752848 colon .a 2783 to 3421 639 to 1       639/639
(100 %)
6 diff
(99.1 %id)
BI850185 Prostate .a 3139 to 3675 1 to 538       538/538
(100 %)
3 diff
(99.5 %id)
CT004768 T-Lymphocytes .a 3627 to 4153 1 to 527   tiling clone, AAA   527/533
(98 %)
5 diff
(99.1 %id)
TI_2194697426   .a 3648 to 4754 1118 to 27       1092/1281
(85 %)
7 diff
(99.5 %id)
BP274285 Kidney .a 3666 to 4106 1 to 442       442/552
(80 %)
22 diff
(96.1 %id)
TI_1968234001   .a 3767 to 4941 3 to 1169       1167/1294
(90 %)
20 diff
(98.5 %id)
TI_2194698169   .a 3769 to 4861 1094 to 4   tiling clone,   1171/1274
(91 %)
32 diff
(97.5 %id)
H57303 liver and spleen .a 3932 to 4335 12 to 421       410/421
(97 %)
13 diff
(97.0 %id)
BI022233 marrow .a 4146 to 4584 8 to 444       437/444
(98 %)
7 diff
(98.5 %id)
TI_2194697424   .a 4250 to 5348 1091 to 7       1085/1253
(86 %)
12 diff
(99.1 %id)
DN919844   .a 4287 to 4875 21 to 607       587/607
(96 %)
8 diff
(98.7 %id)
AW502362 lymph .a 4381 to 4867 8 to 494       487/494
(98 %)
6 diff
(98.8 %id)
TI_154157680   .a 4381 to 4965 80 to 664       585/585
(100 %)
6 diff
(99.0 %id)
AV726501 hypothalamus .a 4550 to 5284 1 to 729       729/760
(95 %)
24 diff
(96.9 %id)
CA950599 Pancreas, Purified pancreatic islet .a 4622 to 5131 1 to 510       510/510
(100 %)
3 diff
(99.5 %id)
TI_2194695766   .a 4677 to 5725 1137 to 93     Submitted on the opposite strand 1045/1298
(80 %)
6 diff
(99.6 %id)
TI_2194699316   .a 4695 to 5725 1114 to 91     Submitted on the opposite strand 1024/1269
(80 %)
27 diff
(97.9 %id)
F11551 brain, total brain .a 4750 to 5099 1 to 350       350/350
(100 %)
2 diff
(99.5 %id)
TI_1968233977   .a 4786 to 5729 1 to 945       945/1271
(74 %)
10 diff
(99.3 %id)
AA532815 colon .a 4928 to 5467 546 to 14   AAA Possibly primed on the genome, locally A rich (25/27 A in genome downstream of last aligned base) 533/551
(96 %)
12 diff
(97.9 %id)
BI715215 Pancreas, Purified pancreatic islet .a 4973 to 5561 35 to 623       589/623
(94 %)
6 diff
(99.1 %id)
BU078287 Pancreas, Purified pancreatic islet .a 4973 to 5532 28 to 587       560/587
(95 %)
6 diff
(99.0 %id)
M85602   .a 4993 to 5333 1 to 342       342/342
(100 %)
2 diff
(99.5 %id)
TI_1968233999   .a 5072 to 5729 17 to 674       658/1246
(52 %)
3 diff
(99.8 %id)
BE089211 breast .a 5150 to 5395 8 to 259       252/268
(94 %)
13 diff
(95.2 %id)
W44624 senescent fibroblast .a 5206 to 5680 1 to 480       480/480
(100 %)
10 diff
(98.0 %id)
H14405 whole brain .a 5228 to 5697 1 to 483       483/490
(98 %)
25 diff
(94.9 %id)
FN166989 breast carcinoma .a 5232 to 5332 100 to 1     Submitted on the opposite strand 100/100
(100 %)
1 diff
(99.0 %id)
CD698706 normal nasopharynx .a 5331 to 5742 22 to 433       412/433
(95 %)
6 diff
(98.7 %id)
FN154983 breast carcinoma .a 5559 to 5641 81 to 1     Submitted on the opposite strand 81/81
(100 %)
5 diff
(93.9 %id)
AV724808 hypothalamus .a 5635 to 6175 1 to 533       533/535
(99 %)
11 diff
(98.0 %id)
AA906205 pooled .a 5759 to 6132 1 to 373     Submitted on the opposite strand 373/373
(100 %)
1 diff
(99.8 %id)
H57304 liver and spleen .a 5777 to 6212 453 to 9       445/453
(98 %)
17 diff
(96.3 %id)
BP431128   .a 5793 to 6122 18 to 347       330/347
(95 %)
6 diff
(98.3 %id)
W23843 lung .a 5795 to 5940 15 to 160       146/160
(91 %)
6 diff
(96.3 %id)
FN088579 breast carcinoma .a 5833 to 5903 69 to 1     Submitted on the opposite strand 69/70
(98 %)
2 diff
(97.2 %id)
BU078037 Pancreas, Purified pancreatic islet .a 5948 to 6375 428 to 1       428/428
(100 %)
3 diff
(99.3 %id)
CA950363 Pancreas, Purified pancreatic islet .a 5948 to 6376 429 to 1   tiling clone,   429/429
(100 %)
0 diff
(100 %id)
F09211 brain, total brain .a 6084 to 6376 293 to 1       293/293
(100 %)
0 diff
(100 %id)
DA587984 lung .a 6364 to 6957 2 to 600   tiling clone, capped   599/599
(100 %)
3 diff
(99.5 %id)
DA342461 substantia nigra .a 6370 to 6939 2 to 573   tiling clone, capped   572/572
(100 %)
2 diff
(99.7 %id)
CD107125 brain, Pituitary .a 6634 to 7437 1 to 812   tiling clone,   812/865
(93 %)
13 diff
(98.5 %id)
GD155698   .a 6640 to 6798 7 to 165   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 159/165
(96 %)
0 diff
(100 %id)
T60279 Liver .a 6689 to 6992 1 to 306       306/308
(99 %)
7 diff
(97.8 %id)
CB999731 Pooled-Skin .a 6691 to 7248 1 to 565       565/788
(71 %)
20 diff
(97.5 %id)
EH345125   .a 6778 to 6865 1 to 88       88/88
(100 %)
4 diff
(95.5 %id)
AV711836   .a 6848 to 7250 1 to 403       403/403
(100 %)
0 diff
(100 %id)
EH352262   .a 6917 to 6986 1 to 70       70/70
(100 %)
1 diff
(98.6 %id)
BG034743 breast, mammary adenocarcinoma, cell line .a 6999 to 7799 32 to 823   tiling clone,   792/945
(83 %)
27 diff
(97.2 %id)
FN147835 breast carcinoma .a 7105 to 7195 1 to 90       90/90
(100 %)
2 diff
(97.8 %id)
CB963697 Blood vessels - aorta, basilar and artery .a 7520 to 8193 1 to 677       677/780
(86 %)
16 diff
(98.0 %id)
CB963677 Blood vessels - aorta, basilar and artery .a 7520 to 8071 1 to 562       562/794
(70 %)
18 diff
(97.8 %id)
N93892 multiple sclerosis lesions .a 7524 to 8003 1 to 483   tiling clone,   483/483
(100 %)
7 diff
(98.6 %id)
BX090977 multiple sclerosis lesions .a 7527 to 8210 1 to 684       684/684
(100 %)
2 diff
(99.8 %id)
TI_154034702   .a 7585 to 8361 845 to 79   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 767/794
(96 %)
28 diff
(96.5 %id)
AW373006 breast .a 7603 to 8146 541 to 2       540/544
(99 %)
0 diff
(100 %id)
R68166 placenta .a 7640 to 7975 1 to 346       346/392
(88 %)
12 diff
(97.0 %id)
CA407035 adipose .a 7651 to 8203 1 to 551       551/551
(100 %)
2 diff
(99.7 %id)
FN153555 breast carcinoma .a 7660 to 7710 51 to 1     Submitted on the opposite strand 51/54
(94 %)
0 diff
(100 %id)
BQ017456 lung, Metastatic Chondrosarcoma .a 7661 to 8347 696 to 16   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 681/681
(100 %)
7 diff
(99.0 %id)
TI_157608041   .a 7789 to 8361 661 to 88   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 574/805
(71 %)
12 diff
(98.6 %id)
BP397553 pancreatic islet .a 7796 to 8361 1 to 566     Submitted on the opposite strand 566/566
(100 %)
2 diff
(99.7 %id)
FN106473 breast carcinoma .a 7797 to 7911 113 to 1     Submitted on the opposite strand 113/113
(100 %)
2 diff
(98.3 %id)
CA337113 posterior rhombomeres 5-8 (4 pooled) .a 7798 to 8296 1 to 499       499/499
(100 %)
1 diff
(99.8 %id)
TI_157606240   .a 7801 to 8361 663 to 103   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 561/908
(61 %)
8 diff
(99.2 %id)
TI_158435940   .a 7801 to 8361 665 to 105   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 561/931
(60 %)
3 diff
(99.7 %id)
AF085846   .a 7802 to 8361 1 to 560   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 560/560
(100 %)
2 diff
(99.7 %id)
DB319493 lung .a 7815 to 8361 548 to 1       548/548
(100 %)
1 diff
(99.9 %id)
AI742034 pooled .a 7822 to 8358 549 to 12   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 538/538
(100 %)
3 diff
(99.5 %id)
CA443745 lung, Metastatic Chondrosarcoma .a 7843 to 8361 537 to 19   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 519/527
(98 %)
0 diff
(100 %id)
AI640821 Kidney .a 7844 to 8361 540 to 23   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 518/518
(100 %)
2 diff
(99.7 %id)
R70740 placenta .a 7849 to 8179 1 to 336       336/337
(99 %)
10 diff
(97.1 %id)
AW273723 pooled .a 7856 to 8363 509 to 2   tiling clone,   508/509
(99 %)
0 diff
(100 %id)
AI640834 Kidney .a 7870 to 8361 492 to 1       492/492
(100 %)
4 diff
(99.2 %id)
BI496975 cochlea, ear .a 7870 to 8361 1 to 492   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 492/492
(100 %)
5 diff
(99.0 %id)
TI_157598545   .a 7870 to 8361 588 to 91   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 498/1189
(41 %)
28 diff
(97.7 %id)
AI472101 pooled .a 7920 to 8363 448 to 5       444/448
(99 %)
0 diff
(100 %id)
BF875793 lung_tumor .a 7994 to 8311 330 to 9     Submitted on the opposite strand 322/330
(97 %)
0 diff
(100 %id)
AA831692 germinal center B cell .a 8003 to 8361 393 to 35   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 359/359
(100 %)
0 diff
(100 %id)
R70741 placenta .a 8015 to 8351 340 to 1       340/411
(82 %)
6 diff
(98.6 %id)
AA287064.
matches multiple genes
germinal center B cell .a 8038 to 8363 332 to 7     also hits gene TRIB2 326/332
(98 %)
0 diff
(100 %id)
AI758511 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 8059 to 8361 303 to 1       303/303
(100 %)
1 diff
(99.7 %id)
N64002 multiple sclerosis lesions .a 8152 to 8361 210 to 1       210/210
(100 %)
0 diff
(100 %id)
T61660 Liver .a 8214 to 8334 122 to 1       122/129
(94 %)
1 diff
(99.3 %id)
AI147094 pooled .a 8260 to 8363 110 to 7       104/110
(94 %)
0 diff
(100 %id)
NM_001164386.1   .b 1 to 8379 1 to 8379 exact RefSeq, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 8379/8379
(100 %)
0 diff
(100 %id)
BC140820 Brain, cerebral cortex, PCR rescued clones .b 126 to 5743 1 to 5618 Q1460R tiling clone,   5618/5618
(100 %)
1 diff
(100.0 %id)
BC144627 Brain, cerebral cortex, PCR rescued clones .b 126 to 5743 1 to 5618 exact tiling clone,   5618/5618
(100 %)
1 diff
(100.0 %id)
AL832899 lymph node .b 4159 to 8379 1 to 4227   tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 4227/4227
(100 %)
4 diff
(100.0 %id)
R22686 whole brain .b 4769 to 5115 1 to 355     Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 355/411
(86 %)
10 diff
(97.6 %id)
H17253 whole brain .b 4770 to 5321 1 to 558       558/566
(98 %)
23 diff
(96.0 %id)
H11811 whole brain .b 4774 to 5214 1 to 446       446/450
(99 %)
9 diff
(98.0 %id)
H17146 whole brain .b 6021 to 6407 397 to 1       397/399
(99 %)
14 diff
(96.5 %id)
R43392 whole brain .b 6057 to 6394 361 to 13   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 349/385
(90 %)
2 diff
(99.5 %id)
H11735 whole brain .b 6068 to 6404 346 to 1       346/421
(82 %)
12 diff
(97.2 %id)
AF478567   .c 1 to 6370 1 to 6370 Q1452R tiling clone, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 6370/6371
(99 %)
8 diff
(99.9 %id)
NM_016340.5   .c 1 to 8355 1 to 8355 exact RefSeq, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 8355/8355
(100 %)
0 diff
(100 %id)
AF478468   .c 207 to 5012 1 to 4806 K566E L619P E637K V669A Q1452R     4806/4806
(100 %)
7 diff
(99.9 %id)
NM_001164387.1   .d 1 to 8079 1 to 8079 exact RefSeq, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 8079/8079
(100 %)
0 diff
(100 %id)
AF394782   .d 25 to 5766 1 to 5742 Q1465R tiling clone,   5742/5742
(100 %)
1 diff
(100.0 %id)
BG714366 brain, hypothalamus .e 1 to 677 1 to 689   tiling clone,   689/689
(100 %)
24 diff
(96.6 %id)
NM_001164388.1   .e 2 to 8065 1 to 8064 exact RefSeq, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 8064/8064
(100 %)
0 diff
(100 %id)
DC380563 placenta .e 9 to 556 1 to 548   tiling clone,   548/548
(100 %)
0 diff
(100 %id)
BP355696   .e 13 to 595 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DC401594 testis .e 25 to 549 1 to 526       526/526
(100 %)
1 diff
(99.9 %id)
CA389429 eye, RPE/choroid .e 26 to 534 1 to 509       509/509
(100 %)
0 diff
(100 %id)
BP363548 lung .e 46 to 634 1 to 589       589/589
(100 %)
2 diff
(99.7 %id)
AL596926   .e 73 to 370 1 to 298       298/298
(100 %)
0 diff
(100 %id)
DC400393 testis .e 73 to 661 1 to 590       590/590
(100 %)
3 diff
(99.5 %id)
BP362953 thalamus .e 73 to 654 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BC133703 PCR rescued clones .e 79 to 4772 1 to 4694 exact tiling clone,   4694/4694
(100 %)
0 diff
(100 %id)
DC401481 testis .e 90 to 630 1 to 541       541/541
(100 %)
0 diff
(100 %id)
CN311915 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 93 to 782 1 to 690       690/690
(100 %)
1 diff
(99.9 %id)
DB456772 testis .e 95 to 584 1 to 490       490/490
(100 %)
1 diff
(99.8 %id)
TI_1968231029   .e 127 to 1278 84 to 1221   AAA   1140/1287
(88 %)
32 diff
(97.6 %id)
TI_1968231041   .e 127 to 1127 87 to 1084       998/1267
(78 %)
10 diff
(99.3 %id)
TI_2194695778   .e 127 to 1117 108 to 1098   AAA Submitted on the opposite strand 991/1167
(84 %)
71 diff
(94.0 %id)
TI_2194695790   .e 127 to 1130 106 to 1119     Submitted on the opposite strand 1014/1215
(83 %)
35 diff
(97.2 %id)
TI_2194697461   .e 2554 to 3650 1 to 1089       1089/1275
(85 %)
13 diff
(99.0 %id)
TI_1968234003   .e 2568 to 3650 15 to 1092       1078/1280
(84 %)
12 diff
(99.1 %id)
TI_2194698175   .e 2682 to 3896 1205 to 4       1202/1299
(92 %)
15 diff
(98.9 %id)
TI_2194697456   .e 2758 to 3839 1086 to 17       1070/1265
(84 %)
12 diff
(99.1 %id)
TI_1968233993   .e 3070 to 4214 11 to 1153       1145/1336
(85 %)
13 diff
(99.1 %id)
TI_2194697458   .e 3070 to 4112 15 to 1052       1040/1263
(82 %)
15 diff
(98.9 %id)
TI_2194697457   .e 3192 to 4382 1171 to 5       1167/1260
(92 %)
22 diff
(98.3 %id)
CN311919 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 3329 to 4028 1 to 699       699/699
(100 %)
1 diff
(99.9 %id)
AA172360   .e 4786 to 5182 1 to 398   tiling clone,   398/398
(100 %)
1 diff
(99.8 %id)
H14489 whole brain .e 4939 to 5395 5 to 474   tiling clone,   470/474
(99 %)
5 diff
(99.0 %id)
TI_149272426   .e 5214 to 6110 936 to 57   tiling clone,   880/1082
(81 %)
0 diff
(100 %id)
BU675061 lung, Primary Lung Epithelial Cells .e 5474 to 6098 625 to 1       625/625
(100 %)
0 diff
(100 %id)
TI_154016579   .e 5482 to 6080 679 to 80   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 600/965
(62 %)
3 diff
(99.7 %id)
CA437295 lung, Metastatic Chondrosarcoma .e 5482 to 6098 618 to 1       618/625
(98 %)
3 diff
(99.6 %id)
BU568060 testis .e 5497 to 6080 1 to 584       584/584
(100 %)
2 diff
(99.7 %id)
BY797874 eye .e 5498 to 6095 1 to 598       598/599
(99 %)
2 diff
(99.7 %id)
AA258969 germinal center B cell .e 5505 to 5716 1 to 212   fully sequenced,   212/212
(100 %)
0 diff
(100 %id)
AA877663 colon, colon tumor RER+ .e 5537 to 6079 543 to 1       543/543
(100 %)
1 diff
(99.9 %id)
BF223529 carcinoid, lung .e 5537 to 6086 552 to 1       552/552
(100 %)
9 diff
(98.4 %id)
BF509592   .e 5549 to 6097 549 to 1       549/549
(100 %)
2 diff
(99.7 %id)
DN919845   .e 5559 to 6076 520 to 4       517/520
(99 %)
0 diff
(100 %id)
BI792415 Pancreas, Purified pancreatic islet .e 5577 to 6079 503 to 1       503/503
(100 %)
0 diff
(100 %id)
AA810653 germinal center B cell .e 5583 to 6087 505 to 1       505/505
(100 %)
0 diff
(100 %id)
BF063486 colon, colon tumor, RER+ .e 5595 to 6081 488 to 1       488/488
(100 %)
2 diff
(99.6 %id)
BF509591   .e 5610 to 6097 488 to 1       488/488
(100 %)
0 diff
(100 %id)
C05701   .e 5615 to 6089 478 to 1       478/478
(100 %)
4 diff
(99.2 %id)
AW271815 Kidney .e 5622 to 6082 461 to 1       461/461
(100 %)
0 diff
(100 %id)
AW449299   .e 5629 to 6097 469 to 1       469/469
(100 %)
0 diff
(100 %id)
AA828094 germinal center B cell .e 5632 to 6092 461 to 1       461/461
(100 %)
0 diff
(100 %id)
AA864906 germinal center B cell .e 5632 to 6094 463 to 1       463/463
(100 %)
0 diff
(100 %id)
CA395968 eye, RPE/choroid .e 5637 to 6200 1 to 567       567/567
(100 %)
2 diff
(99.7 %id)
BE045730 carcinoid, lung .e 5642 to 6082 441 to 1       441/441
(100 %)
4 diff
(99.1 %id)
AI739407 colon, colon tumor, RER+ .e 5648 to 6079 432 to 1       432/432
(100 %)
1 diff
(99.8 %id)
AW449860   .e 5652 to 6097 446 to 1       446/446
(100 %)
5 diff
(98.9 %id)
AI307128 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 5658 to 6083 426 to 1       426/426
(100 %)
0 diff
(100 %id)
AW297496   .e 5659 to 6097 439 to 1       439/439
(100 %)
0 diff
(100 %id)
BQ026144 placenta .e 5661 to 6097 437 to 1       437/437
(100 %)
4 diff
(99.1 %id)
H05149 whole brain .e 5669 to 6080 427 to 12   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 416/419
(99 %)
12 diff
(97.2 %id)
AA172184   .e 5680 to 6087 408 to 1       408/408
(100 %)
0 diff
(100 %id)
AA814843 germinal center B cell .e 5685 to 5983 300 to 1       300/300
(100 %)
2 diff
(99.4 %id)
AA258023 germinal center B cell .e 5686 to 6087 402 to 1   fully sequenced,   402/402
(100 %)
0 diff
(100 %id)
AA968724 pooled germ cell tumors .e 5686 to 6080 395 to 1       395/395
(100 %)
0 diff
(100 %id)
BF902661 marrow .e 5758 to 6138 19 to 398       380/398
(95 %)
6 diff
(98.5 %id)
BF510146   .e 5780 to 6097 318 to 1       318/318
(100 %)
6 diff
(98.2 %id)
AA287000 germinal center B cell .e 5786 to 6081 1 to 296       296/296
(100 %)
0 diff
(100 %id)
H14490 whole brain .e 5791 to 6093 306 to 1       306/335
(91 %)
11 diff
(96.8 %id)
AA372699 colon .e 5801 to 6014 1 to 214       214/214
(100 %)
0 diff
(100 %id)
AI469571 colon, moderately-differentiated adenocarcinoma .e 5834 to 6088 255 to 1       255/255
(100 %)
0 diff
(100 %id)
BG119038 adenocarcinoma, cell line, Liver .e 5837 to 6351 1 to 543       543/903
(60 %)
28 diff
(96.9 %id)
BU172361 melanotic melanoma, skin .e 5844 to 6080 1 to 237   AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 237/237
(100 %)
0 diff
(100 %id)
DA817493   .e 5846 to 6357 2 to 513   tiling clone, capped   512/512
(100 %)
0 diff
(100 %id)
BE813409 breast_normal .e 5910 to 6263 351 to 1       351/352
(99 %)
0 diff
(100 %id)
GD135718   .e 5922 to 6090 7 to 175       169/175
(96 %)
6 diff
(96.6 %id)
NM_001164389.1   .f 1 to 4507 1 to 4507 exact RefSeq, AAA Possibly primed on the genome, locally A rich (25/27 A in genome downstream of last aligned base) 4507/4507
(100 %)
0 diff
(100 %id)
AF478469   .f 207 to 4382 1 to 4176 K566E L619P E637K V669A tiling clone,   4176/4176
(100 %)
6 diff
(99.9 %id)
BX117281   .f 3799 to 4508 1 to 710       710/710
(100 %)
0 diff
(100 %id)
AA442511   .f 3799 to 4216 1 to 418   fully sequenced, Possibly primed on the genome, locally A rich (25/27 A in genome downstream of last aligned base) 418/418
(100 %)
0 diff
(100 %id)
AW272416 pooled .f 3928 to 4497 572 to 5       568/572
(99 %)
2 diff
(99.7 %id)
BQ376449 testis_normal .f 3951 to 4373 424 to 3       422/424
(99 %)
0 diff
(100 %id)
AW590694 pooled germ cell tumors .f 4006 to 4507 502 to 1       502/502
(100 %)
1 diff
(99.9 %id)
DB522202 testis .f 4029 to 4507 1 to 479     Submitted on the opposite strand 479/479
(100 %)
0 diff
(100 %id)
AW074852 pooled .f 4065 to 4511 446 to 1       446/446
(100 %)
2 diff
(99.6 %id)
AI018807   .f 4075 to 4501 427 to 1       427/427
(100 %)
0 diff
(100 %id)
AW204176   .f 4130 to 4496 395 to 29   AAA   367/378
(97 %)
0 diff
(100 %id)
AW169970 pooled .f 4154 to 4572 422 to 4   tiling clone,   419/422
(99 %)
0 diff
(100 %id)
AA436713   .f 4186 to 4507 333 to 12   fully sequenced, AAA Possibly primed on the genome, locally A rich (25/27 A in genome downstream of last aligned base) 322/322
(100 %)
0 diff
(100 %id)
DA213899 brain .g 1 to 541 2 to 542   tiling clone, capped   541/541
(100 %)
0 diff
(100 %id)
AK074318   .g 507 to 3937 1 to 3428   tiling clone, available from FLJ, AAA Possibly primed on the genome, locally A rich (25/27 A in genome downstream of last aligned base) 3428/3428
(100 %)
7 diff
(99.8 %id)
AK302640 testis .h 1 to 4103 1 to 4103 exact tiling clone,   4103/4103
(100 %)
0 diff
(100 %id)
NM_133372.2   .i 1 to 6613 1 to 6613 G76C RefSeq, AAA   6613/6613
(100 %)
1 diff
(100.0 %id)
AK292473 testis .i 47 to 3891 1 to 3845 G76C E602G Q648R T702A tiling clone,   3845/3845
(100 %)
4 diff
(99.9 %id)
DQ145719   .i 96 to 3721 1 to 3626 G76C Q648R tiling clone,   3626/3626
(100 %)
2 diff
(100.0 %id)
TI_1948094952   .i 143 to 980 132 to 981       757/1466
(51 %)
30 diff
(98.0 %id)
TI_1948094815   .i 144 to 1022 132 to 1009   fully sequenced,   878/946
(92 %)
35 diff
(96.4 %id)
TI_1948095111   .i 144 to 999 130 to 988   fully sequenced,   859/988
(86 %)
28 diff
(97.2 %id)
TI_1948095112   .i 969 to 1668 827 to 122   fully sequenced,   706/827
(85 %)
11 diff
(98.7 %id)
TI_1948094816   .i 992 to 1677 799 to 115   fully sequenced,   685/799
(85 %)
10 diff
(98.8 %id)
TI_1948094953   .i 1056 to 1668 727 to 117       611/1391
(43 %)
19 diff
(98.7 %id)
DB034320 testis .j 1 to 577 2 to 578   tiling clone, capped   577/577
(100 %)
1 diff
(99.9 %id)
BX492425   .j 43 to 620 3 to 580       578/580
(99 %)
7 diff
(98.8 %id)
NM_001008738.2   .j 43 to 6571 1 to 6529 G76C RefSeq, AAA   6529/6529
(100 %)
1 diff
(100.0 %id)
BP237196 coronary artery .j 71 to 639 1 to 574       574/582
(98 %)
12 diff
(98.0 %id)
DB055780 testis .j 71 to 620 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
BP283899 bone marrow .j 87 to 673 1 to 587       587/587
(100 %)
10 diff
(98.3 %id)
DB030375 testis .j 87 to 633 2 to 548   capped   547/547
(100 %)
2 diff
(99.7 %id)
BP199781 brain .j 89 to 670 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
BP218708 caudate nucleus .j 89 to 669 1 to 582       582/582
(100 %)
7 diff
(98.8 %id)
DA785078 brain .j 89 to 677 2 to 592   capped   591/591
(100 %)
3 diff
(99.5 %id)
BP336991 coronary artery .j 89 to 671 1 to 582       582/582
(100 %)
2 diff
(99.7 %id)
DA458533 tongue, tumor tissue .j 90 to 654 2 to 567   capped   566/566
(100 %)
2 diff
(99.7 %id)
DA630734 Kidney .j 90 to 646 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DB027307 testis .j 90 to 683 2 to 595   capped   594/594
(100 %)
1 diff
(99.9 %id)
DB053633 testis .j 90 to 658 2 to 573   capped   572/572
(100 %)
5 diff
(99.2 %id)
DB074272 testis .j 90 to 625 2 to 537   capped   536/537
(99 %)
2 diff
(99.7 %id)
BP229394 brain .j 91 to 668 1 to 577       577/582
(99 %)
5 diff
(99.2 %id)
BE264767 lung, small cell carcinoma .j 109 to 760 1 to 653   available from MGC,   651/777
(83 %)
17 diff
(97.9 %id)
CV025889 mixed .j 185 to 783 1 to 599   tiling clone,   599/599
(100 %)
1 diff
(99.9 %id)
DW410691 Liver .j 670 to 977 17 to 323       307/332
(92 %)
8 diff
(97.6 %id)
AB075841 brain .j 770 to 4949 1 to 4180   tiling clone, available from KIAA,   4180/4180
(100 %)
3 diff
(100.0 %id)
BX118766 pooled .j 851 to 1071 1 to 221       221/222
(99 %)
1 diff
(99.6 %id)
CN311142 embryonic stem cells, cell lines H1, H7, andH9 .j 883 to 1617 10 to 745       736/745
(98 %)
6 diff
(99.2 %id)
TI_1948095270   .j 919 to 1626 821 to 110       712/1376
(51 %)
20 diff
(98.6 %id)
BG436338 placenta .j 1630 to 2316 1 to 695       695/939
(74 %)
45 diff
(95.3 %id)
BF363456 nervous_normal .j 1787 to 1986 8 to 207       200/207
(96 %)
7 diff
(96.7 %id)
AL834127 human skeletal muscle .j 1881 to 6570 1 to 4684   available from DKFZ, AAA   4684/4684
(100 %)
9 diff
(99.9 %id)
BU175533 embryonal carcinoma, cell line, testis .j 1918 to 2811 1 to 895       895/895
(100 %)
7 diff
(99.3 %id)
AL832008 human skeletal muscle .j 1947 to 6571 1 to 4624   tiling clone, available from DKFZ, AAA   4624/4624
(100 %)
5 diff
(99.9 %id)
BG954147 colon .j 2044 to 2462 424 to 6       419/425
(98 %)
0 diff
(100 %id)
BF366238 nervous_tumor .j 2162 to 2511 351 to 1       351/351
(100 %)
2 diff
(99.5 %id)
M78498   .j 2281 to 2613 1 to 334       334/334
(100 %)
2 diff
(99.5 %id)
AI557289 Prostate .j 2423 to 3107 10 to 685     Submitted on the opposite strand 676/785
(86 %)
12 diff
(98.5 %id)
AK126675 cerebellum .j 2599 to 6571 1 to 3972   tiling clone, available from FLJ,   3972/3972
(100 %)
4 diff
(99.9 %id)
DA107531 cerebellum .j 2600 to 3145 2 to 547   capped   546/546
(100 %)
0 diff
(100 %id)
DA396431 thalamus .j 2753 to 3342 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
BF795780 lymph, lymphoma, cell line .j 2887 to 3569 1 to 678       678/719
(94 %)
17 diff
(97.7 %id)
DB239137 trachea .j 2894 to 3478 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
CV351823 placenta_normal .j 2931 to 3307 376 to 1     Submitted on the opposite strand 376/377
(99 %)
10 diff
(97.4 %id)
TI_149302001   .j 3188 to 3856 768 to 111   AAA   658/767
(85 %)
38 diff
(95.1 %id)
BM980273 lung, Primary Lung Cystic Fibrosis EpithelialCells .j 3552 to 3856 316 to 12   AAA   305/305
(100 %)
5 diff
(98.4 %id)
BX106641 multiple sclerosis lesions .j 3565 to 4384 1 to 821       821/823
(99 %)
6 diff
(99.3 %id)
N49122 multiple sclerosis lesions .j 3592 to 4024 1 to 438       438/439
(99 %)
8 diff
(98.2 %id)
AW606984 head_neck .j 3781 to 4273 55 to 548       494/548
(90 %)
6 diff
(99.0 %id)
BX496074 Liver .j 3783 to 4321 1 to 539       539/539
(100 %)
1 diff
(99.9 %id)
AA973956 carcinoid, lung .j 3784 to 4194 1 to 411     Submitted on the opposite strand 411/411
(100 %)
1 diff
(99.8 %id)
BQ441057 melanotic melanoma, skin .j 3800 to 4672 1 to 881   tiling clone,   881/881
(100 %)
10 diff
(98.9 %id)
BE748166 bone marrow, from acute myelogenous leukemia .j 3804 to 4287 1 to 484       484/740
(65 %)
3 diff
(99.6 %id)
AA247766   .j 3851 to 3949 1 to 99       99/99
(100 %)
0 diff
(100 %id)
BU785944 Pancreas, Purified pancreatic islet .j 3957 to 4406 5 to 454   fully sequenced,   450/454
(99 %)
5 diff
(98.9 %id)
N78520 multiple sclerosis lesions .j 4042 to 4422 1 to 386       386/392
(98 %)
7 diff
(98.3 %id)
DA287786 corpus callosum .j 4098 to 4651 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
EH328996   .j 4108 to 4181 1 to 74       74/74
(100 %)
0 diff
(100 %id)
BF110481 carcinoid, lung .j 4192 to 4732 1 to 541     Submitted on the opposite strand 541/541
(100 %)
1 diff
(99.9 %id)
CK825188 Pancreas, Purified pancreatic islet .j 4193 to 4776 1 to 584     Submitted on the opposite strand 584/584
(100 %)
3 diff
(99.5 %id)
BX647026 Liver .j 4216 to 4955 1 to 739       739/739
(100 %)
4 diff
(99.5 %id)
DA469688   .j 4243 to 4794 2 to 553   capped   552/552
(100 %)
3 diff
(99.5 %id)
AW976264   .j 4250 to 4940 690 to 1     Submitted on the opposite strand 690/692
(99 %)
7 diff
(99.0 %id)
AW809231 stomach .j 4300 to 4500 1 to 199       199/199
(100 %)
6 diff
(97.0 %id)
AW809206 stomach .j 4304 to 4500 20 to 215       196/215
(91 %)
6 diff
(97.3 %id)
CK825189 Pancreas, Purified pancreatic islet .j 4338 to 4953 628 to 13     Submitted on the opposite strand 616/628
(98 %)
0 diff
(100 %id)
BU072476 Pancreas, Purified pancreatic islet .j 4346 to 4940 595 to 1       595/595
(100 %)
2 diff
(99.7 %id)
AI887929 carcinoid, lung .j 4357 to 4940 582 to 1       582/582
(100 %)
3 diff
(99.5 %id)
BU785622 Pancreas, Purified pancreatic islet .j 4376 to 4940 565 to 1   fully sequenced,   565/565
(100 %)
1 diff
(99.9 %id)
N48346 multiple sclerosis lesions .j 4382 to 4942 564 to 1       564/594
(94 %)
23 diff
(96.2 %id)
CA776270 Pancreas, Purified pancreatic islet .j 4407 to 4940 534 to 1       534/534
(100 %)
1 diff
(99.9 %id)
BM315028 Pancreas, Purified pancreatic islet .j 4432 to 4941 510 to 1       510/510
(100 %)
1 diff
(99.9 %id)
N73678 multiple sclerosis lesions .j 4722 to 4942 225 to 1       225/232
(96 %)
12 diff
(94.9 %id)
CR936723 fetal kidney .k 1 to 6366 1 to 6348 M496T T552F M553A H554L R555* tiling clone, AAA Suspected internal deletion 6348/6348
(100 %)
11 diff
(99.9 %id)
AI807850 pooled .k 4278 to 4740 463 to 1       463/463
(100 %)
6 diff
(98.8 %id)
AW665981 pooled .k 4279 to 4739 461 to 1       461/461
(100 %)
1 diff
(99.8 %id)
AI911425 pooled .k 4286 to 4739 454 to 1       454/454
(100 %)
3 diff
(99.4 %id)
DA342192 substantia nigra .k 4287 to 4835 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
AW593142 pooled .k 4289 to 4724 436 to 1       436/436
(100 %)
1 diff
(99.8 %id)
AI244699 Kidney .k 4300 to 4736 440 to 1       440/440
(100 %)
4 diff
(99.1 %id)
AW387791 stomach .k 4311 to 4512 1 to 202       202/202
(100 %)
1 diff
(99.6 %id)
AW387830 stomach .k 4311 to 4512 1 to 202       202/202
(100 %)
1 diff
(99.6 %id)
AA749122 germinal center B cell .k 4311 to 4736 436 to 12   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 425/425
(100 %)
3 diff
(99.3 %id)
AA741126 germinal center B cell .k 4311 to 4736 437 to 12   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 426/426
(100 %)
0 diff
(100 %id)
AA834580 germinal center B cell .k 4311 to 4743 437 to 5       433/437
(99 %)
0 diff
(100 %id)
AA946695 germinal center B cell .k 4316 to 4743 430 to 3       428/430
(99 %)
0 diff
(100 %id)
AI419758 pooled .k 4318 to 4739 422 to 1       422/422
(100 %)
6 diff
(98.6 %id)
BX493668   .k 4333 to 4915 8 to 590       583/590
(98 %)
6 diff
(99.0 %id)
AA904637 pooled .k 4340 to 4739 400 to 1       400/400
(100 %)
1 diff
(99.8 %id)
AI654504 pooled germ cell tumors .k 4343 to 4724 383 to 2       382/383
(99 %)
0 diff
(100 %id)
AA931308 pooled .k 4359 to 4737 380 to 2       379/380
(99 %)
0 diff
(100 %id)
BQ214201 melanotic melanoma, skin .k 4362 to 5190 1 to 843       843/883
(95 %)
43 diff
(95.2 %id)
AW015237   .k 4374 to 4736 380 to 18   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 363/363
(100 %)
2 diff
(99.5 %id)
AI160015 uterus .k 4493 to 4909 417 to 1       417/417
(100 %)
0 diff
(100 %id)
AA831294 germinal center B cell .k 4496 to 4736 252 to 12   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 241/241
(100 %)
0 diff
(100 %id)
R57253   .k 4525 to 4723 1 to 201       201/201
(100 %)
4 diff
(98.1 %id)
BG391164 embryonal carcinoma, cell line, testis .k 4539 to 5207 1 to 665       665/773
(86 %)
14 diff
(98.2 %id)
AA825481 germinal center B cell .k 4576 to 4743 170 to 3       168/170
(98 %)
0 diff
(100 %id)
DW433278 Liver .k 4715 to 4909 17 to 211   AAA Possibly primed on the genome, locally A rich (11/12 A in genome downstream of last aligned base) 195/213
(91 %)
2 diff
(99.1 %id)
N25256 melanocyte .k 5212 to 5611 1 to 404     Submitted on the opposite strand 404/404
(100 %)
6 diff
(98.6 %id)
CA487609   .k 5217 to 6148 1 to 946       946/977
(96 %)
23 diff
(97.7 %id)
BG776773 lung, mucoepidermoid carcinoma .k 5258 to 5883 1 to 640       640/818
(78 %)
41 diff
(95.0 %id)
H70089 liver and spleen .k 5260 to 5686 1 to 428       428/428
(100 %)
7 diff
(98.4 %id)
BM718924 eye, fetal eye .k 5367 to 6199 1 to 828       828/831
(99 %)
7 diff
(99.2 %id)
BX117700 liver and spleen .k 5384 to 6133 1 to 748       748/750
(99 %)
3 diff
(99.6 %id)
TI_151758538   .k 5418 to 6366 1026 to 98   AAA   929/929
(100 %)
17 diff
(98.2 %id)
TI_154115339   .k 5504 to 6368 951 to 96   AAA   856/957
(89 %)
14 diff
(98.6 %id)
TI_149273065   .k 5532 to 6366 949 to 126   AAA   824/836
(98 %)
31 diff
(96.3 %id)
DW426241 Liver .k 5561 to 5832 12 to 283       272/283
(96 %)
6 diff
(97.9 %id)
CB046408 2 pooled tumors (clear cell type), Kidney .k 5605 to 5908 1 to 305       305/305
(100 %)
25 diff
(91.9 %id)
CA449088 Chondrosarcoma, Left Pubic Bone .k 5632 to 6368 752 to 17   AAA   736/736
(100 %)
2 diff
(99.8 %id)
AW973308   .k 5643 to 6228 577 to 1     Submitted on the opposite strand 577/595
(96 %)
24 diff
(96.0 %id)
CD389688 embryonic trophoblasts, made from WA01 stemcells .k 5657 to 6367 20 to 729       710/737
(96 %)
6 diff
(99.2 %id)
TI_149283388   .k 5691 to 6282 791 to 198       594/797
(74 %)
0 diff
(100 %id)
BU618356 Cell Line, Chondrosarcoma .k 5713 to 6366 672 to 19   AAA   654/659
(99 %)
1 diff
(99.9 %id)
AA704160 liver and spleen .k 5754 to 5944 191 to 1       191/191
(100 %)
0 diff
(100 %id)
BU675525 lung, Primary Lung Epithelial Cells .k 5768 to 6366 617 to 19   AAA   599/599
(100 %)
5 diff
(99.2 %id)
AV720630 corresponding non cancerous liver tissue .k 5780 to 6366 593 to 6     Submitted on the opposite strand 588/593
(99 %)
0 diff
(100 %id)
AI064856 Liver .k 5794 to 6366 574 to 1       574/574
(100 %)
1 diff
(99.9 %id)
R08244 liver and spleen .k 5794 to 5947 157 to 1     Submitted on the opposite strand 157/157
(100 %)
3 diff
(98.1 %id)
CB158439 Liver .k 5803 to 6343 1 to 541       541/541
(100 %)
2 diff
(99.7 %id)
BQ373508 prostate_tumor .k 5834 to 6084 255 to 2       254/255
(99 %)
0 diff
(100 %id)
AI523202 aorta .k 5835 to 6260 426 to 1       426/426
(100 %)
0 diff
(100 %id)
BE769151 prostate_tumor .k 5836 to 6134 317 to 19       299/335
(89 %)
0 diff
(100 %id)
BF002738 Prostate .k 5845 to 6260 415 to 1       415/415
(100 %)
4 diff
(99.1 %id)
BG290138 bladder, transitional cell papilloma, cell line .k 5865 to 6366 1 to 499   AAA   499/499
(100 %)
3 diff
(99.4 %id)
AA806717 germinal center B cell .k 5903 to 6260 358 to 1       358/358
(100 %)
0 diff
(100 %id)
BP397813 pancreatic islet .k 5904 to 6366 1 to 463     Submitted on the opposite strand 463/463
(100 %)
0 diff
(100 %id)
CB046407 2 pooled tumors (clear cell type), Kidney .k 5934 to 6360 458 to 31   AAA   428/428
(100 %)
8 diff
(98.2 %id)
N28245   .k 5947 to 6121 175 to 1       175/175
(100 %)
0 diff
(100 %id)
N51056 liver and spleen .k 5952 to 6367 416 to 1       416/416
(100 %)
1 diff
(99.8 %id)
AA552381 colon, tumor .k 5986 to 6260 275 to 1       275/275
(100 %)
0 diff
(100 %id)
AI424250 Prostate .k 5997 to 6260 263 to 1       263/263
(100 %)
2 diff
(99.3 %id)
AI521436 ovary, tumor, 5 pooled (see description) .k 5997 to 6365 398 to 30   AAA   369/369
(100 %)
14 diff
(96.3 %id)
BU615246 Bone, Human Chondrosarcoma Cell Line .k 6001 to 6366 384 to 19   AAA   366/366
(100 %)
1 diff
(99.8 %id)
N33892 melanocyte .k 6074 to 6363 290 to 1     Submitted on the opposite strand 290/290
(100 %)
0 diff
(100 %id)
BU676149 lung, Primary Lung Epithelial Cells .k 6128 to 6360 1 to 234   AAA Submitted on the opposite strand 234/234
(100 %)
3 diff
(98.8 %id)
FN072509 breast carcinoma .k 6207 to 6264 57 to 1     Submitted on the opposite strand 57/57
(100 %)
1 diff
(98.3 %id)
H69674 liver and spleen .k 6247 to 6366 120 to 1       120/120
(100 %)
0 diff
(100 %id)
FN048058 breast carcinoma .k 6288 to 6364 1 to 77       77/80
(96 %)
2 diff
(97.5 %id)
NM_001164390.1   .l 1 to 3111 1 to 3111 exact RefSeq, AAA Possibly primed on the genome, locally A rich (25/27 A in genome downstream of last aligned base) 3111/3111
(100 %)
0 diff
(100 %id)
BC142964 Clones donated by RIKEN .l 6 to 3111 1 to 3106 P749A tiling clone, AAA Possibly primed on the genome, locally A rich (25/27 A in genome downstream of last aligned base) 3106/3106
(100 %)
5 diff
(99.9 %id)
DB499455 hypothalamus .l 8 to 487 1 to 481     Submitted on the opposite strand 481/488
(98 %)
4 diff
(99.2 %id)
DB570583 hypothalamus .l 2628 to 3111 1 to 484     Submitted on the opposite strand 484/484
(100 %)
1 diff
(99.8 %id)
BX649095 human fetal kidney .m 1 to 3662 1 to 3662 L19P Q375R tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (21/21 A in genome downstream of last aligned base) 3662/3662
(100 %)
7 diff
(99.9 %id)
CN311918 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .m 316 to 979 1 to 664   tiling clone,   664/664
(100 %)
0 diff
(100 %id)
DA125092 cerebellum .m 503 to 1044 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
BC001956 Lung, small cell carcinoma .n 1 to 1719 1 to 1719 G76C tiling clone, available from MGC, AAA   1719/1719
(100 %)
1 diff
(100.0 %id)
DB021244 testis .n 1 to 550 2 to 554   capped   553/553
(100 %)
4 diff
(99.3 %id)
DB335912 testis .n 1191 to 1719 529 to 1       529/529
(100 %)
0 diff
(100 %id)
AA883683 pooled .n 1493 to 1727 236 to 2       235/236
(99 %)
0 diff
(100 %id)
BX643625   .o 1 to 725 1 to 725   tiling clone,   725/725
(100 %)
0 diff
(100 %id)
AV685080 hepatocellular carcinoma .o 706 to 1095 1 to 381   tiling clone, to resequence,   381/382
(99 %)
6 diff
(98.5 %id)
AV699388 hepatocellular carcinoma .o 1838 to 2525 679 to 1   tiling clone, to resequence,   679/686
(98 %)
29 diff
(95.8 %id)
AK056296   .p 1 to 2199 2 to 2200 exact tiling clone, available from FLJ,   2200/2200
(100 %)
1 diff
(100.0 %id)
DA703840   .p 1 to 514 2 to 515   capped   514/514
(100 %)
0 diff
(100 %id)
DB323856   .p 1662 to 2199 539 to 1       539/539
(100 %)
1 diff
(99.9 %id)
BX955732   .q 1 to 673 1 to 673 M126V tiling clone,   673/673
(100 %)
1 diff
(99.9 %id)
BX955741   .q 1 to 631 1 to 631       631/631
(100 %)
1 diff
(99.9 %id)
BI459416 testis .r 1 to 990 4 to 999 G76C Q187H N196* tiling clone,   999/999
(100 %)
56 diff
(94.4 %id)
N34482 melanocyte .r 646 to 1122 479 to 1   tiling clone,   479/481
(99 %)
10 diff
(98.0 %id)
AI383467 pooled .r 722 to 1122 415 to 15   AAA   401/401
(100 %)
3 diff
(99.3 %id)
DA691160   .s 1 to 559 2 to 560 exact tiling clone, capped   559/559
(100 %)
0 diff
(100 %id)
DA095135 cerebellum .t 1 to 551 2 to 553 E152* tiling clone, capped   552/552
(100 %)
1 diff
(99.9 %id)
AL597039   .u 1 to 557 1 to 557 exact tiling clone,   557/558
(99 %)
1 diff
(99.9 %id)
AL597053   .u 1 to 458 1 to 458 exact     458/458
(100 %)
0 diff
(100 %id)
AA678258 liver and spleen .u 284 to 780 496 to 1   tiling clone,   496/496
(100 %)
1 diff
(99.8 %id)
H69848 liver and spleen .u 403 to 779 383 to 1       383/383
(100 %)
10 diff
(97.4 %id)
BP350760   .va 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
1 diff
(99.9 %id)
BP349270 brain .vb 1 to 581 1 to 581 P89L E90X tiling clone,   581/581
(100 %)
2 diff
(99.7 %id)
DC370352   .vc 1 to 496 1 to 496 exact tiling clone,   496/565
(87 %)
4 diff
(99.3 %id)
DA121291 cerebellum .vd 1 to 554 2 to 556 exact tiling clone, capped   558/558
(100 %)
1 diff
(99.9 %id)
BM748794 stomach .ve-u 1 to 596 4 to 594 P67A tiling clone,   591/594
(99 %)
12 diff
(98.0 %id)
BU538229 adenocarcinoma, cell line, breast .ve-u 22 to 814 27 to 834 exact tiling clone,   808/1012
(79 %)
34 diff
(96.7 %id)
BC020539 Placenta, choriocarcinoma .ve-u 40 to 1411 1 to 1372 exact tiling clone, available from MGC, AAA   1372/1372
(100 %)
1 diff
(100.0 %id)
BE018621 cervix .ve-u 43 to 549 1 to 507 exact available from MGC,   507/507
(100 %)
0 diff
(100 %id)
DW441177 Liver .ve-u 568 to 937 10 to 380       371/380
(97 %)
6 diff
(98.5 %id)
TI_154061955   .ve-u 652 to 1417 859 to 101   AAA   759/948
(80 %)
13 diff
(98.7 %id)
CA420895 Bone, Enchondroma cell line .ve-u 652 to 1417 777 to 19   AAA   759/759
(100 %)
13 diff
(98.3 %id)
DW428547 Liver .ve-u 660 to 918 17 to 275       259/275
(94 %)
6 diff
(97.9 %id)
AI989601 pooled germ cell tumors .ve-u 784 to 1203 421 to 2       420/421
(99 %)
0 diff
(100 %id)
BE302207 cervix .ve-u 924 to 1412 489 to 1   available from MGC,   489/490
(99 %)
0 diff
(100 %id)
DN916861   .ve-u 988 to 1603 1 to 616   tiling clone,   616/616
(100 %)
0 diff
(100 %id)
FN064518 breast carcinoma .ve-u 990 to 1084 1 to 95       95/95
(100 %)
0 diff
(100 %id)
FN158938 breast carcinoma .ve-u 1019 to 1127 1 to 109       109/109
(100 %)
0 diff
(100 %id)
BF677986 Prostate .ve-u 1089 to 1670 1 to 577       577/813
(70 %)
25 diff
(97.0 %id)
DW462830 Liver .ve-u 1182 to 1531 17 to 366       350/366
(95 %)
6 diff
(98.4 %id)
AW043696 pooled .ve-u 1550 to 1989 538 to 99   tiling clone,   440/538
(81 %)
0 diff
(100 %id)
DN916860   .ve-u 1692 to 2112 423 to 3   tiling clone,   421/423
(99 %)
0 diff
(100 %id)
BX097445 leiomyosarcoma, soft tissue .vf-u 1 to 766 31 to 795   tiling clone,   765/795
(96 %)
5 diff
(99.4 %id)
AA902919 leiomyosarcoma, soft tissue .vf-u 582 to 1096 515 to 1 exact tiling clone,   515/515
(100 %)
0 diff
(100 %id)
AA911005 leiomyosarcoma, soft tissue .vf-u 671 to 1088 418 to 1 exact     418/418
(100 %)
0 diff
(100 %id)
BG220757   .vg-u 1 to 731 3 to 732 T2H E13D H14I S15P I16S ... tiling clone,   732/736
(99 %)
12 diff
(98.4 %id)
BG190741   .vg-u 1 to 732 1 to 736 Y29H M62T tiling clone,   736/736
(100 %)
28 diff
(96.2 %id)
BG181869   .vg-u 32 to 697 1 to 666   tiling clone,   666/722
(92 %)
33 diff
(95.5 %id)
BU620673 cell lines, Chondrosarcoma .vh-u 1 to 822 838 to 19 I2H F9S I10Y Y11I L12* tiling clone, AAA   820/826
(99 %)
8 diff
(99.1 %id)
BF507437   .vh-u 256 to 822 580 to 14   AAA   567/569
(99 %)
0 diff
(100 %id)
CV370117 nervous_normal .vi-u 1 to 247 40 to 289 K2Q E28A I46L tiling clone,   250/289
(86 %)
6 diff
(98.0 %id)
CV370106 nervous_normal .vi-u 6 to 307 1 to 304 K2T E6D K16T R17E Q18A ... tiling clone,   304/304
(100 %)
26 diff
(91.5 %id)
CN286713 embryonic stem cells, cell lines H1, H7, andH9 .vi-u 93 to 736 1 to 644   tiling clone,   644/644
(100 %)
0 diff
(100 %id)
BU664479 blood .vj-u 1 to 625 11 to 635 exact tiling clone,   625/635
(98 %)
6 diff
(99.1 %id)
BP417741 small intestine .vk-u 1 to 485 492 to 8 exact tiling clone,   485/492
(98 %)
0 diff
(100 %id)
AU185517 skin .vk-u 9 to 212 204 to 1       204/204
(100 %)
1 diff
(99.6 %id)
AW341669 pooled .vl-u 1 to 427 428 to 3 exact tiling clone,   426/428
(99 %)
0 diff
(100 %id)
BU656444 blood .vm-u 1 to 422 11 to 432 exact tiling clone,   422/432
(97 %)
6 diff
(98.7 %id)
AA714053 germinal center B-cells, tonsil .vn-u 1 to 317 316 to 1 exact tiling clone,   316/316
(100 %)
3 diff
(99.1 %id)
TI_2194695754   Gene FNIP1andRAPGEF6, variant not shown         Submitted on the opposite strand    
TI_2194699696   Gene FNIP1andRAPGEF6, variant not shown         Submitted on the opposite strand    
CR749426 uterus endothel, primary cell culture Gene FNIP1andRAPGEF6, variant not shown       available from DKFZ, AAA Suspected internal deletion, this clone was ignored    
AV710963 adrenal cortico adenoma for Cushing'ssyndrome Gene FNIP1andRAPGEF6, variant not shown         Suspected internal deletion, this clone was ignored    
AV654170 corresponding non cancerous liver tissue Gene FNIP1andRAPGEF6, variant not shown         Suspected internal deletion, this clone was ignored    
DB359493 whole embryo, mainly body Gene FNIP1andRAPGEF6, variant not shown              
DA572463 whole embryo, mainly body Gene FNIP1andRAPGEF6, variant not shown       capped      
R19533 whole brain Gene FNIP1andRAPGEF6, variant not shown         This clone was ignored    
R43886 whole brain Gene FNIP1andRAPGEF6, variant not shown         This clone was ignored    
R16534 liver and spleen Gene FNIP1andRAPGEF6, variant not shown       fully sequenced,      
R16591 liver and spleen Gene FNIP1andRAPGEF6, variant not shown       fully sequenced,      
AA552986 Schwannoma tumor Gene FNIP1andRAPGEF6, variant not shown              
AW263086 Kidney Gene FNIP1andRAPGEF6, variant not shown         Suspected internal deletion, this clone was ignored    
BF217535 brain, glioblastoma Gene FNIP1andRAPGEF6, variant not shown              
CV809956 Blastocyst, pluripotent cell line derived fromblastocyst inner cell mass Gene FNIP1andRAPGEF6, variant not shown         This clone was ignored    
BP271187 small intestine Gene FNIP1andRAPGEF6, variant not shown         Suspected internal deletion, this clone was ignored    
DB148283 thymus Gene FNIP1andRAPGEF6, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve-u, .vf-u, .vg-u, .vh-u, .vi-u, .vj-u, .vk-u, .vl-u, .vm-u, .vn-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes CI