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Gene RAPGEF5TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
295 supporting clones for gene RAPGEF5 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
DN996625 breast cancer, Mammary gland (cancer tissue) .a 1 to 373 1 to 373   tiling clone,   373/373
(100 %)
7 diff
(98.2 %id)
AW977320   .a 236 to 710 1 to 475       475/475
(100 %)
10 diff
(97.9 %id)
NM_012294.3   .a 239 to 6865 1 to 6627   RefSeq,   6627/6629
(99 %)
5 diff
(100.0 %id)
AA721325 germinal center B cell .a 241 to 511 8 to 278     Submitted on the opposite strand 271/278
(97 %)
12 diff
(95.7 %id)
AW511225 pooled .a 242 to 888 1 to 647   tiling clone, Submitted on the opposite strand 647/667
(97 %)
3 diff
(99.6 %id)
DN998255 breast cancer, Mammary gland (cancer tissue) .a 263 to 886 8 to 631   tiling clone,   624/631
(98 %)
6 diff
(99.1 %id)
AA687472 germinal center B cell .a 311 to 687 2 to 378     Submitted on the opposite strand 377/378
(99 %)
0 diff
(100 %id)
AA765623 germinal center B cell .a 319 to 530 1 to 212     Submitted on the opposite strand 212/212
(100 %)
0 diff
(100 %id)
AA284127 germinal center B cell .a 415 to 603 1 to 189     Submitted on the opposite strand 189/198
(95 %)
0 diff
(100 %id)
BP349215 brain .a 1181 to 1763 1 to 583   tiling clone,   583/583
(100 %)
1 diff
(99.9 %id)
AA815190 germinal center B cell .a 1195 to 1648 454 to 3   tiling clone,   452/454
(99 %)
3 diff
(99.4 %id)
AA689421 germinal center B cell .a 1206 to 1293 88 to 1     Submitted on the opposite strand 88/88
(100 %)
3 diff
(96.6 %id)
AI018543 pooled .a 1206 to 1641 436 to 1       436/436
(100 %)
1 diff
(99.8 %id)
DB014002 esophageal, tumor tissue .a 1294 to 1862 9 to 580   tiling clone, capped   574/579
(99 %)
9 diff
(98.5 %id)
AI383379 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 1353 to 1639 287 to 1       287/287
(100 %)
1 diff
(99.7 %id)
DA210677 brain .a 1585 to 2152 2 to 570   capped   569/569
(100 %)
1 diff
(99.9 %id)
DA216334 brain .a 1680 to 2261 2 to 583   capped   582/582
(100 %)
0 diff
(100 %id)
DA399171 thalamus .a 1847 to 2416 2 to 571   tiling clone, capped   570/570
(100 %)
1 diff
(99.9 %id)
TI_1948129721   .a 2201 to 2743 659 to 111   tiling clone,   549/1070
(51 %)
17 diff
(98.5 %id)
TI_1948129720   .a 2202 to 2743 651 to 105       547/1341
(40 %)
26 diff
(98.1 %id)
BI053789 placenta_normal .a 2441 to 2797 1 to 357   tiling clone,   357/357
(100 %)
2 diff
(99.5 %id)
DA396573 thalamus .a 2496 to 3092 2 to 598   capped   597/597
(100 %)
0 diff
(100 %id)
DB082335 testis .a 2564 to 3134 2 to 572   capped   571/571
(100 %)
1 diff
(99.9 %id)
BI054988 placenta_normal .a 2603 to 2925 332 to 6       327/332
(98 %)
2 diff
(99.4 %id)
AI126132   .a 2640 to 3121 484 to 3       482/484
(99 %)
0 diff
(100 %id)
BP212459 cerebrum .a 2710 to 3283 1 to 573       573/573
(100 %)
5 diff
(99.2 %id)
BP314405 mammary gland .a 2781 to 3362 1 to 582   tiling clone,   582/582
(100 %)
0 diff
(100 %id)
BQ428277 melanotic melanoma, skin .a 2989 to 3644 1 to 666       666/904
(73 %)
24 diff
(97.4 %id)
DB513305 testis .a 3073 to 3487 1 to 415     Submitted on the opposite strand 415/415
(100 %)
3 diff
(99.3 %id)
DB232180 trachea .a 3174 to 3766 2 to 594   capped   593/593
(100 %)
0 diff
(100 %id)
DA114716 cerebellum .a 3347 to 3922 2 to 577   tiling clone, capped   576/580
(99 %)
1 diff
(99.9 %id)
DA308664 hippocampus .a 3371 to 3941 2 to 573   capped   572/572
(100 %)
1 diff
(99.9 %id)
BP216438 corpus callosum .a 3558 to 4140 1 to 581       581/582
(99 %)
60 diff
(89.7 %id)
DA408683 thalamus .a 3559 to 3938 2 to 385   capped   384/384
(100 %)
5 diff
(98.7 %id)
DA413213 thalamus .a 3746 to 4291 2 to 552   capped   551/551
(100 %)
3 diff
(99.5 %id)
BQ328797 lung_normal .a 3749 to 4005 1 to 256       256/258
(99 %)
20 diff
(92.3 %id)
BU430299 lymph .a 3798 to 4285 8 to 499       492/499
(98 %)
6 diff
(98.8 %id)
TI_154151604   .a 3798 to 4406 80 to 688       609/661
(92 %)
11 diff
(98.4 %id)
AI028051 parathyroid gland, parathyroid tumor .a 3907 to 4186 1 to 287     Submitted on the opposite strand 287/287
(100 %)
8 diff
(97.3 %id)
BF512218   .a 3907 to 4431 1 to 525     Submitted on the opposite strand 525/525
(100 %)
1 diff
(99.9 %id)
BF508684   .a 3907 to 4489 1 to 582   tiling clone, Submitted on the opposite strand 582/582
(100 %)
5 diff
(99.2 %id)
AI028066 parathyroid gland, parathyroid tumor .a 3915 to 4335 1 to 421     Submitted on the opposite strand 421/421
(100 %)
4 diff
(99.1 %id)
BF109496 pooled .a 3915 to 4358 1 to 444     Submitted on the opposite strand 444/444
(100 %)
6 diff
(98.7 %id)
DA299819 hippocampus .a 3986 to 4557 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA453239 tongue, tumor tissue .a 4053 to 4641 2 to 590   capped   589/589
(100 %)
0 diff
(100 %id)
DA288202 corpus callosum .a 4137 to 4701 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
DB108710 thymus .a 4156 to 4724 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
DA306145 hippocampus .a 4222 to 4804 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DA513320 brain .a 4227 to 4787 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA146417 amygdala .a 4250 to 4823 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DA395659 thalamus .a 4267 to 4858 2 to 593   capped   592/593
(99 %)
2 diff
(99.7 %id)
DB178480 kidney, tumor tissue .a 4284 to 4850 2 to 571   capped   570/570
(100 %)
4 diff
(99.3 %id)
DA165317 amygdala .a 4364 to 4948 2 to 584   capped   583/583
(100 %)
2 diff
(99.7 %id)
DA406256 thalamus .a 4376 to 4940 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA496943 brain .a 4390 to 4965 2 to 577   tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
AU131347   .a 4465 to 5348 2 to 883   capped   882/886
(99 %)
15 diff
(98.4 %id)
DA299070 hippocampus .a 4595 to 5165 2 to 572   capped   571/571
(100 %)
0 diff
(100 %id)
DA173445 amygdala .a 4616 to 5190 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
DA157221 amygdala .a 4631 to 5152 2 to 524   capped   523/523
(100 %)
3 diff
(99.5 %id)
W52857 parathyroid gland, parathyroid tumor .a 4635 to 5184 1 to 563       563/563
(100 %)
17 diff
(97.0 %id)
BP291627 lung .a 4676 to 5253 1 to 578       578/578
(100 %)
2 diff
(99.7 %id)
BX095137 liver and spleen .a 4711 to 5489 1 to 780       780/780
(100 %)
3 diff
(99.7 %id)
R06024 liver and spleen .a 4729 to 5112 1 to 389       389/389
(100 %)
8 diff
(98.0 %id)
DA283619 corpus callosum .a 4805 to 5268 112 to 575   capped   464/574
(80 %)
6 diff
(99.0 %id)
DA175012 amygdala .a 4816 to 5380 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DA303285 hippocampus .a 4818 to 5409 2 to 593   capped   592/592
(100 %)
1 diff
(99.9 %id)
DA174349 amygdala .a 4878 to 5446 2 to 570   tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
DA282946 corpus callosum .a 4913 to 5464 2 to 554   capped   553/553
(100 %)
4 diff
(99.3 %id)
BE704136 nervous_normal .a 5005 to 5211 1 to 208       208/208
(100 %)
5 diff
(97.6 %id)
BE704083 nervous_normal .a 5006 to 5419 425 to 11       415/427
(97 %)
0 diff
(100 %id)
BE704147 nervous_normal .a 5006 to 5391 1 to 384       384/384
(100 %)
8 diff
(98.0 %id)
BE703540 nervous_normal .a 5009 to 5511 507 to 6       502/514
(97 %)
0 diff
(100 %id)
BE704063 nervous_normal .a 5009 to 5411 405 to 2       404/424
(95 %)
0 diff
(100 %id)
BE704068 nervous_normal .a 5009 to 5504 511 to 14       498/516
(96 %)
0 diff
(100 %id)
BE704085 nervous_normal .a 5009 to 5404 4 to 395       392/396
(98 %)
8 diff
(98.0 %id)
BE704113 nervous_normal .a 5009 to 5412 424 to 22       403/433
(93 %)
0 diff
(100 %id)
BE704117 nervous_normal .a 5009 to 5508 1 to 499       499/505
(98 %)
7 diff
(98.7 %id)
BE704157 nervous_normal .a 5009 to 5508 508 to 9       500/508
(98 %)
0 diff
(100 %id)
BE718172 head_neck .a 5009 to 5576 572 to 6       567/575
(98 %)
0 diff
(100 %id)
BE718174 head_neck .a 5009 to 5508 499 to 3       497/502
(99 %)
0 diff
(100 %id)
BE936127 nervous_normal .a 5009 to 5502 491 to 1       491/514
(95 %)
22 diff
(95.8 %id)
BF364745 nervous_normal .a 5009 to 5508 16 to 512       497/523
(95 %)
19 diff
(96.4 %id)
BF364788 nervous_normal .a 5009 to 5454 453 to 8       446/459
(97 %)
0 diff
(100 %id)
BQ338201 nervous_normal .a 5009 to 5502 491 to 1       491/514
(95 %)
22 diff
(95.8 %id)
BE704134 nervous_normal .a 5010 to 5211 1 to 201       201/201
(100 %)
3 diff
(98.6 %id)
BE704133 nervous_normal .a 5011 to 5211 1 to 198       198/198
(100 %)
6 diff
(97.0 %id)
BE704076 nervous_normal .a 5013 to 5414 404 to 1       404/404
(100 %)
20 diff
(95.1 %id)
BE704154 nervous_normal .a 5013 to 5419 408 to 2       407/408
(99 %)
0 diff
(100 %id)
BE718190 head_neck .a 5013 to 5406 9 to 400       392/400
(98 %)
6 diff
(98.5 %id)
BE936129 nervous_normal .a 5013 to 5511 532 to 28       505/532
(94 %)
0 diff
(100 %id)
BQ338177 nervous_normal .a 5013 to 5504 511 to 17       495/511
(96 %)
0 diff
(100 %id)
BQ338203 nervous_normal .a 5013 to 5511 532 to 28       505/532
(94 %)
0 diff
(100 %id)
BE936124 nervous_normal .a 5016 to 5410 401 to 2       400/405
(98 %)
0 diff
(100 %id)
BQ338198 nervous_normal .a 5016 to 5410 401 to 2       400/405
(98 %)
0 diff
(100 %id)
BE703531 nervous_normal .a 5020 to 5514 496 to 1       496/496
(100 %)
0 diff
(100 %id)
BE703544 nervous_normal .a 5020 to 5411 396 to 4       393/396
(99 %)
0 diff
(100 %id)
BE704107 nervous_normal .a 5020 to 5412 399 to 7       393/399
(98 %)
0 diff
(100 %id)
BE704111 nervous_normal .a 5020 to 5486 1 to 467       467/467
(100 %)
0 diff
(100 %id)
BE704140 nervous_normal .a 5020 to 5465 1 to 446       446/446
(100 %)
2 diff
(99.6 %id)
BE718188 head_neck .a 5020 to 5390 372 to 3       370/372
(99 %)
0 diff
(100 %id)
BE704087 nervous_normal .a 5021 to 5506 500 to 12       489/500
(97 %)
0 diff
(100 %id)
BE718189 head_neck .a 5023 to 5502 1 to 479       479/479
(100 %)
1 diff
(99.8 %id)
BE936131 nervous_normal .a 5025 to 5511 501 to 17       485/503
(96 %)
0 diff
(100 %id)
BQ338205 nervous_normal .a 5025 to 5511 501 to 17       485/503
(96 %)
0 diff
(100 %id)
BE703539 nervous_normal .a 5026 to 5511 490 to 6       485/490
(98 %)
0 diff
(100 %id)
BE936128 nervous_normal .a 5026 to 5511 492 to 6       487/492
(98 %)
0 diff
(100 %id)
BQ338202 nervous_normal .a 5026 to 5511 492 to 6       487/492
(98 %)
0 diff
(100 %id)
BE704094 nervous_normal .a 5031 to 5495 1 to 465       465/471
(98 %)
33 diff
(93.0 %id)
BE718164 head_neck .a 5038 to 5582 1 to 545       545/545
(100 %)
3 diff
(99.5 %id)
BE704062 nervous_normal .a 5071 to 5415 1 to 350       350/356
(98 %)
28 diff
(92.2 %id)
BE704080 nervous_normal .a 5071 to 5412 1 to 338       338/340
(99 %)
24 diff
(93.0 %id)
BE704163 nervous_normal .a 5071 to 5405 9 to 338       330/338
(97 %)
6 diff
(98.3 %id)
BE704149 nervous_normal .a 5078 to 5405 1 to 323       323/323
(100 %)
7 diff
(97.9 %id)
AW292920   .a 5111 to 5629 535 to 17   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 519/519
(100 %)
1 diff
(99.9 %id)
DA365094 subthalamic nucleus .a 5136 to 5693 2 to 561   tiling clone, capped   560/560
(100 %)
4 diff
(99.3 %id)
DT217725 brain .a 5203 to 5922 1 to 720   tiling clone,   720/720
(100 %)
4 diff
(99.5 %id)
BE704110 nervous_normal .a 5287 to 5511 229 to 6       224/229
(97 %)
0 diff
(100 %id)
BE703528 nervous_normal .a 5309 to 5502 194 to 1       194/194
(100 %)
0 diff
(100 %id)
BE703533 nervous_normal .a 5348 to 5511 167 to 5       163/167
(97 %)
0 diff
(100 %id)
BE819112 breast_normal .a 5361 to 5508 28 to 174       147/178
(82 %)
4 diff
(97.8 %id)
AA732485 germinal center B cell .a 5402 to 5629 237 to 11   tiling clone, AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 227/227
(100 %)
3 diff
(98.7 %id)
R05925 liver and spleen .a 5451 to 5629 180 to 2       179/180
(99 %)
0 diff
(100 %id)
BE704118 nervous_normal .a 5466 to 5572 11 to 115       105/115
(91 %)
6 diff
(94.8 %id)
AV704627 adrenal gland .a 5670 to 6109 1 to 440       440/440
(100 %)
1 diff
(99.8 %id)
BF512545   .a 5753 to 6151 4 to 402     Submitted on the opposite strand 399/419
(95 %)
4 diff
(99.1 %id)
BF513909   .a 5753 to 6151 4 to 402     Submitted on the opposite strand 399/419
(95 %)
4 diff
(99.1 %id)
FN132097 breast carcinoma .a 5784 to 5870 1 to 87       87/87
(100 %)
5 diff
(94.3 %id)
BM479769 embryonal carcinoma, cell line, testis .a 5786 to 6560 1 to 781   tiling clone,   781/1109
(70 %)
27 diff
(97.6 %id)
BE042352 colon, moderately-differentiated adenocarcinoma .a 5975 to 6108 136 to 1       136/136
(100 %)
1 diff
(99.3 %id)
BQ339409 nervous_normal .a 6007 to 6147 1 to 140       140/151
(92 %)
8 diff
(94.8 %id)
W39730 parathyroid gland, parathyroid tumor .a 6166 to 6238 1 to 73       73/73
(100 %)
0 diff
(100 %id)
BF948525 nervous_normal .a 6257 to 6587 335 to 3       333/335
(99 %)
0 diff
(100 %id)
AI797013 carcinoid, lung .a 6273 to 6739 1 to 467     Submitted on the opposite strand 467/467
(100 %)
3 diff
(99.4 %id)
W20053 parathyroid gland, parathyroid tumor .a 6275 to 6548 1 to 275   fully sequenced,   275/275
(100 %)
1 diff
(99.7 %id)
W31523 parathyroid gland, parathyroid tumor .a 6275 to 6506 1 to 232       232/232
(100 %)
1 diff
(99.6 %id)
W38671 parathyroid gland, parathyroid tumor .a 6277 to 6605 1 to 333   fully sequenced,   333/333
(100 %)
2 diff
(99.4 %id)
W19693 parathyroid gland, parathyroid tumor .a 6277 to 6670 1 to 397   fully sequenced,   397/397
(100 %)
5 diff
(98.8 %id)
W56891 parathyroid gland, parathyroid tumor .a 6277 to 6764 1 to 488       488/488
(100 %)
0 diff
(100 %id)
W56472 parathyroid gland, parathyroid tumor .a 6286 to 6805 1 to 522       522/523
(99 %)
5 diff
(99.1 %id)
W23489 parathyroid gland, parathyroid tumor .a 6287 to 6843 1 to 559   fully sequenced,   559/559
(100 %)
10 diff
(98.3 %id)
W31491 parathyroid gland, parathyroid tumor .a 6287 to 6716 1 to 431       431/431
(100 %)
3 diff
(99.4 %id)
W32644 parathyroid gland, parathyroid tumor .a 6287 to 6520 1 to 235   fully sequenced,   235/235
(100 %)
2 diff
(99.2 %id)
W37574 parathyroid gland, parathyroid tumor .a 6287 to 6575 1 to 291   fully sequenced,   291/291
(100 %)
5 diff
(98.3 %id)
W31883.
matches multiple genes
parathyroid gland, parathyroid tumor .a 6289 to 6408 1 to 122     also hits gene REEP3 122/123
(99 %)
4 diff
(96.8 %id)
AA332313 Embryo, 8 weeks .a 6303 to 6571 1 to 270       270/270
(100 %)
2 diff
(99.3 %id)
AI761592 pooled .a 6314 to 6847 542 to 9       534/542
(98 %)
0 diff
(100 %id)
W53007 parathyroid gland, parathyroid tumor .a 6323 to 6843 1 to 525       525/531
(98 %)
5 diff
(99.1 %id)
AU153098   .a 6327 to 6846 517 to 1       517/519
(99 %)
9 diff
(98.3 %id)
AI653399 pooled germ cell tumors .a 6330 to 6846 517 to 1       517/517
(100 %)
0 diff
(100 %id)
AA397989   .a 6336 to 6732 1 to 397       397/397
(100 %)
0 diff
(100 %id)
AA889459 parathyroid gland, parathyroid tumor .a 6336 to 6847 515 to 5       511/515
(99 %)
0 diff
(100 %id)
AW952512   .a 6338 to 6787 1 to 466       466/469
(99 %)
36 diff
(92.4 %id)
BE048511 Kidney .a 6339 to 6847 508 to 1       508/508
(100 %)
1 diff
(99.9 %id)
H04657 placenta .a 6352 to 6793 1 to 439       439/449
(97 %)
14 diff
(96.9 %id)
AA772349 parathyroid gland, parathyroid tumor .a 6356 to 6847 512 to 21       492/512
(96 %)
0 diff
(100 %id)
AA724399 parathyroid gland, parathyroid tumor .a 6357 to 6847 497 to 8       490/497
(98 %)
0 diff
(100 %id)
AA910335 Kidney .a 6363 to 6844 488 to 6       483/488
(98 %)
0 diff
(100 %id)
N95086 parathyroid gland, parathyroid tumor .a 6364 to 6850 475 to 1   fully sequenced,   475/475
(100 %)
17 diff
(96.5 %id)
AA772329 parathyroid gland, parathyroid tumor .a 6378 to 6846 479 to 12   AAA   468/468
(100 %)
1 diff
(99.8 %id)
AA451891   .a 6378 to 6847 474 to 5   tiling clone,   470/474
(99 %)
0 diff
(100 %id)
AI041489 parathyroid gland, parathyroid tumor .a 6379 to 6847 475 to 7       469/475
(98 %)
0 diff
(100 %id)
AI126145   .a 6386 to 6847 463 to 3       461/463
(99 %)
0 diff
(100 %id)
AI590931 normal gingiva (cell line from immortalizedkeratinocytes) .a 6386 to 6846 472 to 12   AAA   461/461
(100 %)
0 diff
(100 %id)
AA830125 germinal center B cell .a 6389 to 6846 468 to 12   AAA   457/457
(100 %)
1 diff
(99.8 %id)
AI033916 parathyroid gland, parathyroid tumor .a 6390 to 6847 462 to 6       457/462
(98 %)
0 diff
(100 %id)
AI038090 parathyroid gland, parathyroid tumor .a 6390 to 6846 468 to 12   AAA   457/457
(100 %)
2 diff
(99.6 %id)
AA838830 parathyroid gland, parathyroid tumor .a 6392 to 6844 458 to 6       453/458
(98 %)
0 diff
(100 %id)
AI634015 Kidney .a 6394 to 6847 454 to 2       453/454
(99 %)
0 diff
(100 %id)
FN143237 breast carcinoma .a 6404 to 6498 1 to 95       95/95
(100 %)
0 diff
(100 %id)
AI091600 parathyroid gland, parathyroid tumor .a 6410 to 6846 449 to 14   AAA   436/436
(100 %)
3 diff
(99.4 %id)
BE048853 Kidney .a 6414 to 6843 444 to 15   AAA   430/430
(100 %)
1 diff
(99.8 %id)
W04571 parathyroid gland, parathyroid tumor .a 6416 to 6846 447 to 16   AAA   432/432
(100 %)
2 diff
(99.6 %id)
AI025357 parathyroid gland, parathyroid tumor .a 6417 to 6846 441 to 13   AAA   429/429
(100 %)
3 diff
(99.4 %id)
AI078615   .a 6419 to 6846 427 to 1       427/427
(100 %)
1 diff
(99.8 %id)
AI264100 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 6420 to 6847 432 to 6       427/432
(98 %)
0 diff
(100 %id)
W15530 parathyroid gland, parathyroid tumor .a 6421 to 6846 441 to 12   AAA   430/430
(100 %)
6 diff
(98.7 %id)
BF478122 pooled germ cell tumors .a 6423 to 6846 437 to 14   AAA   424/424
(100 %)
2 diff
(99.6 %id)
AI050909 parathyroid gland, parathyroid tumor .a 6429 to 6846 418 to 1       418/418
(100 %)
0 diff
(100 %id)
AA860799 parathyroid gland, parathyroid tumor .a 6430 to 6847 421 to 5       417/421
(99 %)
0 diff
(100 %id)
AA706700 parathyroid gland, parathyroid tumor .a 6436 to 6844 413 to 6       408/413
(98 %)
0 diff
(100 %id)
AI028141 parathyroid gland, parathyroid tumor .a 6437 to 6846 427 to 19   AAA   409/409
(100 %)
4 diff
(99.1 %id)
AI189059 placenta .a 6437 to 6846 436 to 26   AAA   411/411
(100 %)
3 diff
(99.3 %id)
AW235214 pooled germ cell tumors .a 6437 to 6846 423 to 14   AAA   410/410
(100 %)
0 diff
(100 %id)
AA782145 parathyroid gland, parathyroid tumor .a 6445 to 6846 417 to 16   AAA   402/402
(100 %)
0 diff
(100 %id)
AI203304 pooled germ cell tumors .a 6447 to 6846 413 to 14   AAA   400/400
(100 %)
2 diff
(99.5 %id)
AI982774 pooled germ cell tumors .a 6450 to 6846 410 to 14   AAA   397/397
(100 %)
0 diff
(100 %id)
AA694429 parathyroid gland, parathyroid tumor .a 6453 to 6846 393 to 1       393/393
(100 %)
1 diff
(99.8 %id)
AA399664   .a 6460 to 6844 386 to 3       384/386
(99 %)
0 diff
(100 %id)
BE221429 carcinoid, lung .a 6460 to 6860 406 to 6       401/406
(98 %)
0 diff
(100 %id)
AI681195 carcinoid, lung .a 6462 to 6860 398 to 6       393/398
(98 %)
0 diff
(100 %id)
AI370676   .a 6476 to 6846 374 to 1       374/378
(98 %)
16 diff
(95.8 %id)
H43050 brain .a 6480 to 6806 339 to 8       332/339
(97 %)
0 diff
(100 %id)
W32314 parathyroid gland, parathyroid tumor .a 6490 to 6846 360 to 1   fully sequenced,   360/360
(100 %)
10 diff
(97.3 %id)
AI168132 parathyroid gland, parathyroid tumor .a 6492 to 6847 362 to 7       356/362
(98 %)
0 diff
(100 %id)
AI651349 pooled germ cell tumors .a 6499 to 6846 360 to 13   AAA   348/348
(100 %)
0 diff
(100 %id)
BF431833 pooled .a 6499 to 6859 373 to 13   AAA Possibly primed on the genome, locally A rich (8/8 A in genome downstream of last aligned base) 361/361
(100 %)
0 diff
(100 %id)
AA844578 parathyroid gland, parathyroid tumor .a 6500 to 6641 142 to 1       142/142
(100 %)
0 diff
(100 %id)
AI318605 early stage papillary serous carcinoma, ovary .a 6502 to 6845 1 to 343     Submitted on the opposite strand 343/384
(89 %)
7 diff
(98.2 %id)
AA890636 parathyroid gland, parathyroid tumor .a 6504 to 6860 364 to 8   tiling clone,   357/364
(98 %)
0 diff
(100 %id)
AV705976 adrenal gland .a 6516 to 6846 1 to 330   AAA   330/330
(100 %)
1 diff
(99.7 %id)
N91452 parathyroid gland, parathyroid tumor .a 6518 to 6846 334 to 1   fully sequenced,   334/334
(100 %)
2 diff
(99.5 %id)
AI001830   .a 6526 to 6844 326 to 8       319/326
(97 %)
0 diff
(100 %id)
W16658.
matches multiple genes
parathyroid gland, parathyroid tumor .a 6543 to 6846 306 to 1     Submitted on the opposite strand, also hits gene QKI 306/315
(97 %)
10 diff
(96.9 %id)
W37450 parathyroid gland, parathyroid tumor .a 6545 to 6846 307 to 1   fully sequenced,   307/307
(100 %)
3 diff
(99.1 %id)
AI051358 parathyroid gland, parathyroid tumor .a 6545 to 6846 320 to 20   AAA   301/301
(100 %)
3 diff
(99.1 %id)
H41442 brain .a 6547 to 6806 268 to 10       259/268
(96 %)
0 diff
(100 %id)
W04624 parathyroid gland, parathyroid tumor .a 6547 to 6847 309 to 7       303/310
(97 %)
0 diff
(100 %id)
AI084248 parathyroid gland, parathyroid tumor .a 6558 to 6846 301 to 14   AAA   288/288
(100 %)
1 diff
(99.7 %id)
AA889950 parathyroid gland, parathyroid tumor .a 6560 to 6846 299 to 14   AAA   286/286
(100 %)
1 diff
(99.7 %id)
AI825176 pooled germ cell tumors .a 6569 to 6846 291 to 14   AAA   278/278
(100 %)
0 diff
(100 %id)
N93211 parathyroid gland, parathyroid tumor .a 6575 to 6853 276 to 2   fully sequenced,   275/276
(99 %)
6 diff
(97.9 %id)
AA928600 pooled germ cell tumors .a 6577 to 6848 283 to 12       272/283
(96 %)
0 diff
(100 %id)
AI633934 pooled germ cell tumors .a 6577 to 6846 283 to 14   AAA   270/270
(100 %)
0 diff
(100 %id)
AI370703   .a 6581 to 6846 265 to 1       265/265
(100 %)
1 diff
(99.7 %id)
AA037385 parathyroid gland, parathyroid tumor .a 6590 to 6846 257 to 1       257/270
(95 %)
0 diff
(100 %id)
AA860875 parathyroid gland, parathyroid tumor .a 6606 to 6846 254 to 15   AAA   240/240
(100 %)
2 diff
(99.2 %id)
AW235464 pooled germ cell tumors .a 6607 to 6846 253 to 14   AAA   240/240
(100 %)
0 diff
(100 %id)
AI203024 pooled germ cell tumors .a 6608 to 6846 252 to 14   AAA   239/239
(100 %)
1 diff
(99.6 %id)
AI468769 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 6609 to 6847 238 to 1       238/238
(100 %)
1 diff
(99.6 %id)
AI139851   .a 6627 to 6843 240 to 25   AAA   216/216
(100 %)
1 diff
(99.6 %id)
AA889203 parathyroid gland, parathyroid tumor .a 6634 to 6843 210 to 1       210/210
(100 %)
0 diff
(100 %id)
AI352632 pooled germ cell tumors .a 6635 to 6841 212 to 6       207/212
(97 %)
0 diff
(100 %id)
N90039 parathyroid gland, parathyroid tumor .a 6640 to 6849 209 to 1   fully sequenced,   209/209
(100 %)
3 diff
(98.6 %id)
AA854870 parathyroid gland, parathyroid tumor .a 6659 to 6847 192 to 5       188/192
(97 %)
0 diff
(100 %id)
H41459 brain .a 6672 to 6846 174 to 1       174/174
(100 %)
2 diff
(98.9 %id)
AA766523 germinal center B cell .a 6707 to 6846 150 to 12   AAA   139/139
(100 %)
1 diff
(99.3 %id)
AA772478 parathyroid gland, parathyroid tumor .a 6708 to 6846 151 to 14   AAA   138/138
(100 %)
1 diff
(99.3 %id)
DA834790 placenta .b 1 to 793 2 to 812   tiling clone, capped   811/860
(94 %)
23 diff
(97.4 %id)
AU140742 placenta .b 63 to 802 2 to 738   tiling clone, capped   737/781
(94 %)
5 diff
(99.4 %id)
AU158658 placenta .b 5608 to 6130 521 to 1   tiling clone,   521/526
(99 %)
11 diff
(98.0 %id)
D87467 brain .c 1 to 5900 1 to 5900 exact tiling clone, available from KIAA,   5900/5900
(100 %)
6 diff
(99.9 %id)
BP217184 corpus callosum .c 19 to 454 1 to 436       436/441
(98 %)
1 diff
(99.8 %id)
DA290936 hippocampus .c 23 to 600 2 to 579   tiling clone, capped   578/578
(100 %)
1 diff
(99.9 %id)
CV024081 mixed .c 56 to 701 1 to 646       646/651
(99 %)
2 diff
(99.7 %id)
TI_1948129718   .c 56 to 626 132 to 703       572/1102
(51 %)
21 diff
(98.1 %id)
TI_1948129719   .c 56 to 703 127 to 775       649/1352
(48 %)
16 diff
(98.9 %id)
TI_1948130062   .c 56 to 652 123 to 727       605/1128
(53 %)
20 diff
(98.3 %id)
TI_1948130063   .c 56 to 861 128 to 931       804/1316
(61 %)
13 diff
(99.1 %id)
TI_1948130403   .c 56 to 647 130 to 720       592/1092
(54 %)
30 diff
(97.3 %id)
TI_1948130404   .c 56 to 782 125 to 855       731/1302
(56 %)
15 diff
(98.9 %id)
TI_1948129370   .c 57 to 858 124 to 925       802/1107
(72 %)
33 diff
(97.1 %id)
TI_1948129371   .c 57 to 855 127 to 926       800/1315
(60 %)
19 diff
(98.6 %id)
AA236846 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 162 to 381 1 to 220   fully sequenced,   220/220
(100 %)
0 diff
(100 %id)
AA890211 parathyroid gland, parathyroid tumor .c 209 to 701 493 to 1       493/493
(100 %)
2 diff
(99.6 %id)
W15550 parathyroid gland, parathyroid tumor .c 248 to 701 457 to 1       457/457
(100 %)
6 diff
(98.7 %id)
AA236800 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .c 320 to 695 376 to 1   tiling clone, fully sequenced,   376/376
(100 %)
0 diff
(100 %id)
AK295859 hippocampus .d 1 to 2162 2 to 2163 H295R tiling clone,   2163/2163
(100 %)
1 diff
(100.0 %id)
DA337064 hippocampus .d 1 to 575 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BP202081 amygdala .d 26 to 606 1 to 582       582/582
(100 %)
7 diff
(98.8 %id)
DA367850 subthalamic nucleus .d 96 to 644 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
BP350353 brain .d 138 to 646 1 to 509       509/514
(99 %)
1 diff
(99.9 %id)
BP200346 amygdala .d 164 to 746 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
BP216229 corpus callosum .d 164 to 746 1 to 583       583/583
(100 %)
0 diff
(100 %id)
BP250628 hippocampus .d 165 to 745 1 to 581       581/581
(100 %)
0 diff
(100 %id)
BG699180 brain, hippocampus .d 169 to 871 1 to 702       702/708
(99 %)
12 diff
(98.4 %id)
BP201026 amygdala .d 174 to 756 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DA234935 brain .d 175 to 761 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DB158885 thymus .d 175 to 771 2 to 598   capped   597/601
(99 %)
5 diff
(99.2 %id)
DA321387 hippocampus .d 185 to 730 2 to 548   capped   547/547
(100 %)
2 diff
(99.7 %id)
AL833195 lymph node .e 1 to 2535 1 to 2535 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (17/20 A in genome downstream of last aligned base) 2535/2535
(100 %)
0 diff
(100 %id)
DA138700 alzheimer cortex .e 983 to 1525 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA302213 hippocampus .e 984 to 1360 2 to 378   capped   377/557
(67 %)
2 diff
(99.7 %id)
BX098379 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 2120 to 2548 443 to 15   AAA Possibly primed on the genome, locally A rich (17/20 A in genome downstream of last aligned base) 429/429
(100 %)
0 diff
(100 %id)
AI886079 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 2221 to 2549 330 to 1       330/330
(100 %)
3 diff
(99.1 %id)
TI_57218163   .f 1 to 858 20 to 872   tiling clone,   853/872
(97 %)
20 diff
(97.8 %id)
BI752411 brain .f 9 to 858 1 to 845   tiling clone,   845/845
(100 %)
15 diff
(98.3 %id)
BX103666 germinal center B cell .g 1 to 734 733 to 1 E101N Q102R E103R K104S S105L ... tiling clone, Submitted on the opposite strand 733/733
(100 %)
2 diff
(99.8 %id)
BP362716 thalamus .h 1 to 582 1 to 583 N132T S133P R140T K141X V142S ... tiling clone,   583/583
(100 %)
9 diff
(98.5 %id)
AA890583 parathyroid gland, parathyroid tumor .i 1 to 459 465 to -3 N6V Q11P R12K S13A M14D ... tiling clone,   464/538
(86 %)
18 diff
(96.7 %id)
AW135534   .j 1 to 383 1 to 383 exact tiling clone, Submitted on the opposite strand 383/383
(100 %)
1 diff
(99.8 %id)
DB028322 testis .k 1 to 547 2 to 549 exact tiling clone, capped   548/548
(100 %)
2 diff
(99.7 %id)
BP349018 brain .l 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
0 diff
(100 %id)
AW895815 nervous_normal .m 1 to 345 13 to 357 T75I tiling clone,   345/357
(96 %)
8 diff
(97.8 %id)
BE465465 Kidney .n 1 to 526 526 to 1 exact tiling clone,   526/526
(100 %)
1 diff
(99.9 %id)
BP362964 thalamus .o 1 to 577 2 to 579   tiling clone,   579/582
(99 %)
4 diff
(99.4 %id)
AA709401 uterus .o 372 to 834 463 to 1   tiling clone,   463/463
(100 %)
0 diff
(100 %id)
AI263837 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .o 414 to 834 419 to 1       419/535
(78 %)
12 diff
(97.8 %id)
AI250936 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .o 437 to 835 399 to 1 exact tiling clone,   399/399
(100 %)
2 diff
(99.5 %id)
AA291192 germinal center B cell .p 1 to 448 459 to 12 K5S P6H P7Q I9S P10L ... tiling clone, Submitted on the opposite strand 448/459
(97 %)
1 diff
(99.8 %id)
BX114848 colon, colon tumor RER+ .q-u 1 to 800 1 to 800 exact tiling clone, AAA Possibly primed on the genome, locally A rich (17/20 A in genome downstream of last aligned base) 800/800
(100 %)
2 diff
(99.8 %id)
AA568935 colon, colon tumor RER+ .q-u 350 to 800 451 to 1 exact tiling clone,   451/451
(100 %)
1 diff
(99.8 %id)
AA974738 pooled .q-u 408 to 800 392 to 1 exact     392/392
(100 %)
2 diff
(99.5 %id)
DT218743 brain .r-u 1 to 707 1 to 707 exact tiling clone,   707/707
(100 %)
0 diff
(100 %id)
DA258043 caudate nucleus .s 1 to 578 2 to 579   tiling clone, capped   578/578
(100 %)
0 diff
(100 %id)
DB448143 testis .u 1 to 434 1 to 434 exact tiling clone,   434/434
(100 %)
1 diff
(99.8 %id)
AA847043 ovary .va-u 1 to 415 415 to 0 Q5R P6X L28W A29R D30T ... tiling clone,   415/415
(100 %)
3 diff
(99.3 %id)
AA847054 ovary .va-u 3 to 415 413 to 1 Q5R tiling clone,   413/416
(99 %)
2 diff
(99.6 %id)
BI496925 cochlea, ear .va-u 18 to 408 1 to 391   AAA Possibly primed on the genome, locally A rich (17/20 A in genome downstream of last aligned base) 391/392
(99 %)
5 diff
(98.8 %id)
H72571 liver and spleen .va-u 78 to 410 335 to 1     Submitted on the opposite strand 335/338
(99 %)
4 diff
(98.9 %id)
AW897552 nervous_normal .vb-u 1 to 227 232 to 8 exact tiling clone,   225/232
(96 %)
0 diff
(100 %id)
AV709307 adrenal gland Gene RAPGEF5, variant not shown         Suspected internal deletion, this clone was ignored    
BC039203 Brain, hippocampus Gene RAPGEF5, variant not shown       available from MGC, AAA This clone was ignored    
DB306589 caudate nucleus Gene RAPGEF5, variant not shown         This clone was ignored    
DA257983 caudate nucleus Gene RAPGEF5, variant not shown       capped This clone was ignored    
DA338589 hippocampus Gene RAPGEF5, variant not shown       capped Suspected internal deletion, this clone was ignored    
AV686352 hepatocellular carcinoma Gene RAPGEF5, variant not shown         Suspected internal deletion, this clone was ignored    
AV689703 hepatocellular carcinoma Gene RAPGEF5, variant not shown         Suspected internal deletion, this clone was ignored    
AV689508 hepatocellular carcinoma Gene RAPGEF5, variant not shown              
AV692682 hepatocellular carcinoma Gene RAPGEF5, variant not shown         Suspected internal deletion, this clone was ignored    
AV693788 hepatocellular carcinoma Gene RAPGEF5, variant not shown         Suspected internal deletion, this clone was ignored    
DB354596 whole embryo, mainly head Gene RAPGEF5, variant not shown              
DA568125 whole embryo, mainly head Gene RAPGEF5, variant not shown       capped      
AV727672 hypothalamus Gene RAPGEF5, variant not shown         Suspected internal deletion, this clone was ignored    
AW058353 poorly differentiated adenocarcinoma withsignet ring cell features, stomach Gene RAPGEF5, variant not shown              
TI_1948129372   Gene RAPGEF5, variant not shown         This clone was ignored    
TI_1948129373   Gene RAPGEF5, variant not shown         This clone was ignored    
TI_1948130064   Gene RAPGEF5, variant not shown         This clone was ignored    
TI_1948130065   Gene RAPGEF5, variant not shown         This clone was ignored    
TI_1948130405   Gene RAPGEF5, variant not shown         This clone was ignored    
TI_1948130406   Gene RAPGEF5, variant not shown         This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q-u, .r-u, .s, .t-u, .u, .va-u, .vb-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI