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Gene RANBP17TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
126 supporting clones for gene RANBP17 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
AJ271459 testis .a 1 to 4439 1 to 4439 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 4439/4439
(100 %)
1 diff
(100.0 %id)
NM_022897.2   .a 1 to 4439 1 to 4439 exact RefSeq, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 4439/4439
(100 %)
1 diff
(100.0 %id)
AL710618 human skeletal muscle .a 5 to 560 1 to 556       556/556
(100 %)
4 diff
(99.3 %id)
AF222747   .a 9 to 3602 1 to 3594 exact     3594/3594
(100 %)
2 diff
(100.0 %id)
DB195993 trachea .a 10 to 492 2 to 484   capped   483/483
(100 %)
0 diff
(100 %id)
DB223540 trachea .a 10 to 565 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB277056 uterus .a 10 to 576 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
DB290426 uterus .a 10 to 600 2 to 592   capped   591/591
(100 %)
1 diff
(99.9 %id)
BM479853 eye, retinoblastoma .a 23 to 966 1 to 951       951/1075
(88 %)
18 diff
(98.4 %id)
BM465546 eye, retinoblastoma .a 32 to 966 1 to 940       940/1069
(87 %)
25 diff
(97.7 %id)
AV660558 corresponding non cancerous liver tissue .a 60 to 402 65 to 407     Submitted on the opposite strand 343/411
(83 %)
15 diff
(96.4 %id)
AK027880 thyroid gland .a 182 to 3602 2 to 3422   available from FLJ,   3421/3422
(99 %)
3 diff
(100.0 %id)
DB166373 thyroid gland .a 182 to 967 2 to 784   capped   783/785
(99 %)
12 diff
(98.5 %id)
DA123468 cerebellum .a 410 to 939 2 to 531   capped   530/530
(100 %)
0 diff
(100 %id)
DB072878 testis .a 1005 to 1556 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
CD631691   .a 1056 to 1355 1 to 300       300/301
(99 %)
6 diff
(98.1 %id)
CD631693   .a 1056 to 1355 1 to 298       298/299
(99 %)
9 diff
(97.0 %id)
CD631694   .a 1056 to 1355 1 to 300       300/301
(99 %)
6 diff
(98.1 %id)
CD631697   .a 1056 to 1355 1 to 300       300/301
(99 %)
6 diff
(98.1 %id)
CD631690   .a 1060 to 1355 296 to 1       296/300
(98 %)
1 diff
(99.7 %id)
CD631692   .a 1060 to 1355 295 to 1       295/299
(98 %)
3 diff
(99.0 %id)
CD631695   .a 1060 to 1355 296 to 1       296/300
(98 %)
1 diff
(99.7 %id)
CD631696   .a 1060 to 1355 296 to 1       296/300
(98 %)
1 diff
(99.7 %id)
CN373088 embryonic stem cells, cell lines H1, H7, andH9 .a 1119 to 1622 1 to 504       504/504
(100 %)
1 diff
(99.9 %id)
DB034838 testis .a 1154 to 1720 2 to 570   capped   569/569
(100 %)
2 diff
(99.7 %id)
H98923 melanocyte .a 1155 to 1589 1 to 436       436/448
(97 %)
6 diff
(98.7 %id)
CD631700   .a 1158 to 1355 1 to 198       198/199
(99 %)
6 diff
(97.0 %id)
CD631701   .a 1164 to 1355 192 to 1       192/198
(96 %)
0 diff
(100 %id)
CD631698   .a 1167 to 1355 189 to 1       189/189
(100 %)
0 diff
(100 %id)
CD631699   .a 1167 to 1355 1 to 189       189/190
(99 %)
1 diff
(99.5 %id)
BP426005 small intestine .a 1482 to 1722 1 to 241     Submitted on the opposite strand 241/241
(100 %)
0 diff
(100 %id)
DB023562 testis .a 1617 to 2164 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA617566   .a 1725 to 2239 69 to 584   capped   516/583
(88 %)
8 diff
(98.7 %id)
BE350295 2 pooled Wilms' tumors, one primary and onemetastatic to brain, Kidney .a 2391 to 2953 27 to 589     Submitted on the opposite strand 563/589
(95 %)
14 diff
(97.7 %id)
CN398184 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .a 2449 to 2885 1 to 437       437/437
(100 %)
0 diff
(100 %id)
T84433 liver and spleen .a 2526 to 2949 1 to 440       396/441
(89 %)
12 diff
(97.3 %id)
T85490 liver and spleen .a 2526 to 2874 1 to 356       356/367
(97 %)
17 diff
(95.4 %id)
N99612.
matches multiple genes
multiple sclerosis lesions .a 2775 to 3141 1 to 372     also hits gene ZFR 372/509
(73 %)
6 diff
(98.9 %id)
AA342383 Spleen .a 2845 to 3117 1 to 273       273/273
(100 %)
2 diff
(99.3 %id)
AW964997   .a 2846 to 3451 1 to 606       606/606
(100 %)
1 diff
(99.9 %id)
T82815 liver and spleen .a 2892 to 3210 1 to 324       324/352
(92 %)
8 diff
(97.8 %id)
H63478 liver and spleen .a 2892 to 3251 1 to 368   fully sequenced,   368/368
(100 %)
6 diff
(98.4 %id)
BX116784 liver and spleen .a 2895 to 3602 1 to 708   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 708/708
(100 %)
0 diff
(100 %id)
CR739865 liver and spleen .a 2895 to 3602 1 to 708   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 708/708
(100 %)
0 diff
(100 %id)
AI688500 pooled .a 2958 to 3604 649 to 4       646/671
(96 %)
7 diff
(99.0 %id)
BG204197   .a 2965 to 3602 655 to 18   AAA Submitted on the opposite strand 638/642
(99 %)
9 diff
(98.6 %id)
BF439355 pooled .a 2979 to 3604 632 to 7       626/633
(98 %)
2 diff
(99.7 %id)
AW469267 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 3002 to 3603 602 to 1       602/602
(100 %)
6 diff
(99.1 %id)
AA495741.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3007 to 3458 1 to 452     also hits gene CIDEB 452/452
(100 %)
4 diff
(99.2 %id)
AA774250 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3007 to 3603 2 to 597       596/597
(99 %)
12 diff
(98.0 %id)
AA773792 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3007 to 3457 1 to 449       449/449
(100 %)
4 diff
(99.2 %id)
AI932298 pooled .a 3014 to 3604 594 to 4       591/594
(99 %)
4 diff
(99.4 %id)
AI810009 pooled .a 3015 to 3602 613 to 27   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 587/588
(99 %)
11 diff
(98.2 %id)
AA970235 pooled .a 3029 to 3457 429 to 1       429/429
(100 %)
17 diff
(96.1 %id)
AI803950 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3032 to 3604 576 to 4       573/576
(99 %)
1 diff
(99.9 %id)
BE501432 Kidney .a 3056 to 3602 547 to 1       547/547
(100 %)
1 diff
(99.9 %id)
BE501424 Kidney .a 3059 to 3602 544 to 1       544/544
(100 %)
0 diff
(100 %id)
DB382379 thyroid gland .a 3078 to 3602 525 to 1       525/565
(92 %)
15 diff
(97.4 %id)
AA676898 liver and spleen .a 3083 to 3602 520 to 1       520/520
(100 %)
8 diff
(98.5 %id)
AW298009   .a 3101 to 3602 519 to 18   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 502/502
(100 %)
0 diff
(100 %id)
AA495804.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3131 to 3604 476 to 4     also hits gene CIDEB 473/476
(99 %)
0 diff
(100 %id)
AI697400 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 3131 to 3604 480 to 7       474/480
(98 %)
0 diff
(100 %id)
T88799 liver and spleen .a 3139 to 3572 444 to 1       444/445
(99 %)
17 diff
(96.2 %id)
AA884043 pooled .a 3140 to 3604 468 to 4       465/468
(99 %)
0 diff
(100 %id)
AA909362 pooled .a 3140 to 3619 484 to 6       479/484
(98 %)
5 diff
(99.0 %id)
AI250894 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .a 3143 to 3604 465 to 4       462/465
(99 %)
0 diff
(100 %id)
T85280 liver and spleen .a 3192 to 3604 431 to 7       425/436
(97 %)
0 diff
(100 %id)
H63421 liver and spleen .a 3221 to 3608 394 to 1   fully sequenced,   394/394
(100 %)
10 diff
(97.5 %id)
AK315159 testis .b 1 to 3653 1 to 3653 exact tiling clone,   3653/3653
(100 %)
0 diff
(100 %id)
DC401020 testis .b 1 to 555 1 to 555       555/555
(100 %)
0 diff
(100 %id)
N92666.
matches multiple genes
multiple sclerosis lesions .b 3555 to 3989 436 to 1   tiling clone, also hits gene GABRG1 436/436
(100 %)
1 diff
(99.8 %id)
AA336789 endometrium .b 3595 to 3921 1 to 328       328/328
(100 %)
6 diff
(98.2 %id)
AW955939   .b 3596 to 3972 1 to 377   tiling clone,   377/513
(73 %)
1 diff
(99.9 %id)
AI913686 Kidney .b 3702 to 3972 276 to 1       276/276
(100 %)
18 diff
(93.5 %id)
BE501439 Kidney .b 3797 to 3972 176 to 1       176/176
(100 %)
1 diff
(99.5 %id)
BE221772 Kidney .b 4396 to 4810 420 to 6   tiling clone,   415/420
(98 %)
0 diff
(100 %id)
BM721739 eye, fetal eye .b 4569 to 4988 1 to 420   tiling clone, fully sequenced,   420/420
(100 %)
1 diff
(99.8 %id)
BM677324 eye, fetal eye .b 4958 to 5251 299 to 6   tiling clone, fully sequenced,   294/299
(98 %)
9 diff
(97.0 %id)
AJ288953 testis .c 1 to 4617 1 to 4617 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 4617/4617
(100 %)
1 diff
(100.0 %id)
AJ288954 testis .d 1 to 4738 1 to 4738 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 4738/4738
(100 %)
1 diff
(100.0 %id)
DB043368 testis .d 1410 to 1970 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
AJ288955 testis .e 1 to 4557 1 to 4557 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 4557/4557
(100 %)
1 diff
(100.0 %id)
CN373087 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .e 1433 to 1987 1 to 555       555/555
(100 %)
0 diff
(100 %id)
AJ288952 testis .f 1 to 3373 1 to 3373 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 3373/3373
(100 %)
0 diff
(100 %id)
AL832980 stomach .g 1 to 4571 1 to 4571 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 4571/4571
(100 %)
3 diff
(100.0 %id)
DB035521 testis .h 1 to 563 2 to 564   tiling clone, capped   563/563
(100 %)
0 diff
(100 %id)
AK057478 testis .h 189 to 1919 203 to 1933 R50Q F173L tiling clone, available from FLJ,   1933/1933
(100 %)
2 diff
(99.9 %id)
DB024839 testis .h 189 to 541 206 to 558   capped   557/557
(100 %)
4 diff
(99.3 %id)
DB336405 testis .h 1405 to 1919 517 to 1       517/517
(100 %)
2 diff
(99.7 %id)
DB341942 testis .h 1719 to 1919 203 to 1       203/203
(100 %)
3 diff
(98.6 %id)
AK298785   .i 1 to 1200 1 to 1200 D17G tiling clone,   1200/1200
(100 %)
2 diff
(99.9 %id)
DC365649   .i 1 to 552 1 to 552       552/553
(99 %)
3 diff
(99.5 %id)
DC404010 testis .i 14 to 589 1 to 576   tiling clone,   576/576
(100 %)
0 diff
(100 %id)
DC404060 testis .i 14 to 558 1 to 548       548/548
(100 %)
3 diff
(99.5 %id)
DC404237 testis .i 24 to 584 1 to 562       562/562
(100 %)
2 diff
(99.7 %id)
TI_57202238   .i 62 to 759 28 to 722       695/759
(91 %)
10 diff
(98.7 %id)
BI824159 pooled brain, lung, testis .i 68 to 759 1 to 690       690/727
(94 %)
7 diff
(99.1 %id)
DC401941 testis .i 139 to 697 1 to 559       559/559
(100 %)
1 diff
(99.9 %id)
BF593370 Kidney .i 670 to 1127 458 to 1       458/458
(100 %)
2 diff
(99.6 %id)
AI383599   .i 918 to 1127 210 to 1       210/210
(100 %)
0 diff
(100 %id)
CN373086 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .j 1 to 525 1 to 525   tiling clone,   525/525
(100 %)
0 diff
(100 %id)
TI_149307213   .j 307 to 1063 840 to 87   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 754/950
(79 %)
12 diff
(98.8 %id)
BU607664 Human Lung Epithelial cells, lung .j 312 to 1063 769 to 18   tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 752/752
(100 %)
4 diff
(99.5 %id)
BU686721 lung, Primary Lung Epithelial Cells .j 339 to 1063 742 to 18   AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 725/725
(100 %)
4 diff
(99.5 %id)
AA885461 pooled .j 1009 to 1500 494 to 3   tiling clone,   492/494
(99 %)
0 diff
(100 %id)
AI333129 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .j 1020 to 1500 489 to 9       481/489
(98 %)
0 diff
(100 %id)
AW469697 pooled .j 1130 to 1500 373 to 3       371/373
(99 %)
0 diff
(100 %id)
AA909941 pooled .j 1151 to 1435 285 to 1       285/285
(100 %)
4 diff
(98.6 %id)
BG621348 placenta .k 1 to 746 6 to 765 S7R L117X D187E V188R L189F ... available from MGC,   765/765
(100 %)
24 diff
(96.9 %id)
BC030953 placenta .k 1 to 2172 5 to 2176 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 2176/2176
(100 %)
0 diff
(100 %id)
DB040111 testis .l 1 to 720 2 to 720   tiling clone, capped   719/719
(100 %)
1 diff
(99.9 %id)
DA224406 brain .m 1 to 556 2 to 557   tiling clone, capped   556/556
(100 %)
1 diff
(99.9 %id)
AW628700 pooled .m 470 to 844 379 to 5   tiling clone,   375/379
(98 %)
1 diff
(99.8 %id)
BX118414 pooled .n 1 to 780 1 to 780 exact tiling clone,   780/780
(100 %)
0 diff
(100 %id)
AW418722 pooled .n 222 to 891 673 to 4       670/673
(99 %)
6 diff
(99.2 %id)
AA906206 pooled .n 519 to 891 377 to 5   tiling clone,   373/377
(98 %)
0 diff
(100 %id)
DB036656 testis .o -9 to 557 2 to 569   tiling clone, capped   568/568
(100 %)
3 diff
(99.5 %id)
DB036741 testis .o 18 to 595 2 to 580 D45G tiling clone, capped   579/579
(100 %)
6 diff
(99.0 %id)
CN398183 embryonic stem cells, cell lines H1, H7, andH9 .p 1 to 350 1 to 350 exact tiling clone,   350/350
(100 %)
4 diff
(98.9 %id)
BX092328   .q 1 to 295 1 to 295 exact tiling clone, AAA Possibly primed on the genome, locally A rich (12/13 A in genome downstream of last aligned base) 295/295
(100 %)
0 diff
(100 %id)
AA992096   .q 34 to 296 265 to 3 exact     263/265
(99 %)
0 diff
(100 %id)
DB091549 testis .r 1 to 541 2 to 542   tiling clone, capped   541/541
(100 %)
0 diff
(100 %id)
AA927207 pooled .r 380 to 793 415 to 2   tiling clone,   414/415
(99 %)
0 diff
(100 %id)
AA970498 pooled .r 386 to 791 406 to 1       406/407
(99 %)
0 diff
(100 %id)
AA938935 pooled .r 507 to 793 289 to 2       288/289
(99 %)
1 diff
(99.7 %id)
BE159257 head_neck .s-u 1 to 336 334 to 1 N25I M26C tiling clone, Submitted on the opposite strand 334/334
(100 %)
3 diff
(99.2 %id)
DA102111 cerebellum .s-u 18 to 566 2 to 551 T16A tiling clone, capped   550/550
(100 %)
5 diff
(99.1 %id)
DB049835 testis .t 1 to 560 2 to 562 exact tiling clone, capped   561/561
(100 %)
1 diff
(99.9 %id)
AW130428 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .u-u 1 to 502 513 to 11 exact tiling clone,   503/513
(98 %)
0 diff
(100 %id)
BF991899 placenta_normal .va-u 1 to 294 312 to 20 F5V F13L L15T T16W W17H ... tiling clone,   293/330
(88 %)
0 diff
(100 %id)
DB307389 corpus callosum Gene RANBP17, variant not shown         This clone was ignored    
DA283005 corpus callosum Gene RANBP17, variant not shown       capped This clone was ignored    
DB312447 thalamus Gene RANBP17, variant not shown         This clone was ignored    
DA407903 thalamus Gene RANBP17, variant not shown       capped This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s-u, .t, .u-u, .va-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes C