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Gene RAI2TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
161 supporting clones for gene RAI2 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
CR592976 Placenta Cot 25-normalized .a 1 to 1801 1 to 1801   tiling clone,   1801/1801
(100 %)
0 diff
(100 %id)
BX382061 Placenta Cot 25-normalized .a 1 to 1043 1 to 1032       1032/1047
(98 %)
28 diff
(97.4 %id)
BP423292 small intestine .a 19 to 255 12 to 252     Submitted on the opposite strand 241/252
(95 %)
6 diff
(97.7 %id)
DR005700 Prostate .a 28 to 555 1 to 528       528/528
(100 %)
6 diff
(98.9 %id)
NR_033349.1   .a 34 to 2341 1 to 2308 M252V RefSeq, tiling clone,   2308/2308
(100 %)
4 diff
(99.9 %id)
DA377448 thalamus .a 90 to 667 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DA384274 thalamus .a 115 to 736 2 to 623   capped   622/622
(100 %)
0 diff
(100 %id)
AL709687 human skeletal muscle .a 116 to 674 1 to 559       559/559
(100 %)
2 diff
(99.7 %id)
NR_033348.1   .b 1 to 2502 1 to 2502 M252V RefSeq, tiling clone,   2502/2502
(100 %)
4 diff
(99.9 %id)
TI_44159773   .b 99 to 936 13 to 880       868/914
(94 %)
44 diff
(95.2 %id)
BI523993 pooled lung and spleen .b 120 to 936 1 to 846       846/880
(96 %)
42 diff
(95.3 %id)
BC027937 Lung, Spleen, fetal, pooled .b 121 to 2497 1 to 2377 M252V A342P available from MGC, AAA   2377/2377
(100 %)
3 diff
(99.9 %id)
BP293846 lung .b 260 to 831 1 to 573       573/573
(100 %)
8 diff
(98.7 %id)
BP293991 lung .b 260 to 844 1 to 585       585/585
(100 %)
0 diff
(100 %id)
NM_001172739.1   .c 1 to 2423 1 to 2423 M252V RefSeq,   2423/2423
(100 %)
4 diff
(99.9 %id)
AK056214   .c 102 to 2418 1 to 2317 L169P M252V tiling clone, available from FLJ,   2317/2317
(100 %)
3 diff
(99.9 %id)
DA701511   .c 103 to 653 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DB323728   .c 1912 to 2418 507 to 1       507/514
(98 %)
1 diff
(99.9 %id)
CD673707 eye, lens .d 1 to 237 239 to 3   tiling clone, Submitted on the opposite strand 237/239
(99 %)
0 diff
(100 %id)
NM_021785.4   .d 15 to 2243 1 to 2229 M252V RefSeq,   2229/2229
(100 %)
4 diff
(99.9 %id)
DA648693   .d 16 to 562 2 to 549   capped   548/548
(100 %)
1 diff
(99.9 %id)
DA749164   .d 16 to 562 2 to 548   capped   547/547
(100 %)
0 diff
(100 %id)
DB266302 uterus .d 16 to 475 2 to 462   capped   461/461
(100 %)
1 diff
(99.8 %id)
DA528671 brain .d 22 to 642 2 to 622   capped   621/621
(100 %)
1 diff
(99.9 %id)
DA926115 small intestine .d 22 to 585 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA528941 brain .d 24 to 627 2 to 606   capped   605/605
(100 %)
2 diff
(99.7 %id)
DA687631   .d 24 to 475 2 to 455   capped   454/454
(100 %)
3 diff
(99.4 %id)
DA529270 brain .d 45 to 628 2 to 585   capped   584/584
(100 %)
0 diff
(100 %id)
DA370829 thalamus .d 47 to 602 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DA076042 cerebellum .d 51 to 593 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
DA589585 lung .d 51 to 606 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
AK314631 breast, tumor tissue .d 52 to 1871 1 to 1820 Q176R M252V E444D tiling clone,   1820/1820
(100 %)
3 diff
(99.9 %id)
DA421519 cervix .d 52 to 624 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DB008503 cervix, tumor tissue .d 52 to 603 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA587401 lung .d 53 to 628 2 to 577   capped   576/576
(100 %)
1 diff
(99.9 %id)
DA699809   .d 53 to 573 2 to 522   capped   521/521
(100 %)
0 diff
(100 %id)
DA882643   .d 53 to 601 2 to 550   capped   549/549
(100 %)
1 diff
(99.9 %id)
DA915359   .d 53 to 596 2 to 545   capped   544/544
(100 %)
0 diff
(100 %id)
DA917958 small intestine .d 53 to 626 2 to 575   capped   574/574
(100 %)
0 diff
(100 %id)
DB000817 breast, tumor tissue .d 53 to 587 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DB004570 breast, tumor tissue .d 53 to 619 2 to 576   capped   575/575
(100 %)
9 diff
(98.5 %id)
DB198574 trachea .d 53 to 591 2 to 540   capped   539/539
(100 %)
0 diff
(100 %id)
DB267373 uterus .d 53 to 642 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA969486 stomach .d 54 to 615 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB253264 uterus .d 54 to 625 2 to 573   capped   572/572
(100 %)
0 diff
(100 %id)
DA167556 amygdala .d 55 to 602 2 to 549   capped   548/548
(100 %)
0 diff
(100 %id)
DA511825 brain .d 55 to 616 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA514679 brain .d 55 to 607 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA520950 brain .d 55 to 621 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA588910 lung .d 55 to 618 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA654140   .d 55 to 579 2 to 528   capped   527/527
(100 %)
2 diff
(99.7 %id)
DA654307   .d 55 to 648 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
DA656253   .d 55 to 615 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA688038   .d 55 to 584 2 to 531   capped   530/530
(100 %)
1 diff
(99.9 %id)
DA689539   .d 55 to 608 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA695013   .d 55 to 606 2 to 553   capped   552/552
(100 %)
1 diff
(99.9 %id)
DA708308   .d 55 to 617 2 to 568   capped   567/567
(100 %)
5 diff
(99.2 %id)
DA784996 brain .d 55 to 634 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA796562 brain .d 55 to 596 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA821867 pericardium .d 55 to 578 2 to 529   capped   528/528
(100 %)
6 diff
(98.9 %id)
DA869466 Prostate .d 55 to 596 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA953114 Spleen .d 55 to 606 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DA955602 Spleen .d 55 to 626 2 to 573   capped   572/572
(100 %)
2 diff
(99.7 %id)
DB005291 breast, tumor tissue .d 55 to 597 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DB006910 cervix, tumor tissue .d 55 to 632 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
DB107555 thymus .d 55 to 611 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB248534 uterus .d 55 to 615 2 to 563   capped   562/562
(100 %)
1 diff
(99.9 %id)
DB249704 uterus .d 55 to 567 2 to 515   capped   514/523
(98 %)
2 diff
(99.7 %id)
DB257794 uterus .d 55 to 624 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DB261303 uterus .d 55 to 633 2 to 580   capped   579/579
(100 %)
4 diff
(99.4 %id)
DB265405 uterus .d 55 to 620 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB267231 uterus .d 55 to 649 2 to 596   capped   595/595
(100 %)
1 diff
(99.9 %id)
DB268392 uterus .d 55 to 615 2 to 562   capped   561/561
(100 %)
0 diff
(100 %id)
DA526208 brain .d 57 to 610 2 to 555   capped   554/554
(100 %)
0 diff
(100 %id)
DA841886 placenta .d 57 to 591 2 to 536   capped   535/536
(99 %)
2 diff
(99.7 %id)
DA866978 Prostate .d 57 to 600 2 to 545   capped   544/544
(100 %)
1 diff
(99.9 %id)
DB170144 kidney, tumor tissue .d 57 to 626 2 to 571   capped   570/570
(100 %)
0 diff
(100 %id)
DA296240 hippocampus .d 79 to 634 2 to 557   capped   556/556
(100 %)
1 diff
(99.9 %id)
DA303996 hippocampus .d 89 to 636 2 to 552   capped   551/551
(100 %)
5 diff
(99.1 %id)
DA488772 brain .d 90 to 654 12 to 576   capped   565/575
(98 %)
6 diff
(99.0 %id)
DA746234   .d 93 to 650 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
W80551 heart .d 1003 to 1281 1 to 284       284/284
(100 %)
8 diff
(97.2 %id)
CB048528 Prostate .d 1212 to 1680 7 to 475       469/475
(98 %)
6 diff
(98.8 %id)
BM544872 ovary (pool of 3) .d 1342 to 2239 13 to 910       898/910
(98 %)
0 diff
(100 %id)
AA128046 uterus .d 1492 to 2005 1 to 520   fully sequenced,   520/520
(100 %)
7 diff
(98.7 %id)
BX118803 uterus .d 1498 to 2238 1 to 742   tiling clone, AAA   742/742
(100 %)
1 diff
(99.9 %id)
AA045398 uterus .d 1498 to 2039 1 to 559   fully sequenced,   559/559
(100 %)
18 diff
(96.8 %id)
W00683 lung .d 1516 to 1982 1 to 466   fully sequenced,   466/466
(100 %)
1 diff
(99.8 %id)
BE856787 pooled .d 1523 to 2240 724 to 8       717/724
(99 %)
0 diff
(100 %id)
BU076459 Pancreas, Purified pancreatic islet .d 1617 to 2240 626 to 3   tiling clone,   624/626
(99 %)
0 diff
(100 %id)
AA121460.
matches multiple genes
uterus .d 1646 to 2081 1 to 436     also hits gene PPP3CA 436/436
(100 %)
3 diff
(99.4 %id)
AA121351.
matches multiple genes
uterus .d 1646 to 2098 1 to 452     also hits gene metuma 452/452
(100 %)
2 diff
(99.6 %id)
CK902458 Pancreas, Purified pancreatic islet .d 1652 to 2240 599 to 12     Submitted on the opposite strand 588/599
(98 %)
0 diff
(100 %id)
TI_158431988   .d 1679 to 2238 651 to 93   AAA   559/559
(100 %)
4 diff
(99.3 %id)
AI694966 carcinoid, lung .d 1710 to 2238 539 to 12   AAA   528/528
(100 %)
1 diff
(99.9 %id)
AA362775 ovary .d 1742 to 2067 1 to 326       326/326
(100 %)
4 diff
(98.8 %id)
DB545668 hippocampus .d 1751 to 2237 1 to 487     Submitted on the opposite strand 487/488
(99 %)
2 diff
(99.6 %id)
CB048527 Prostate .d 1751 to 2238 511 to 24   AAA   488/488
(100 %)
5 diff
(99.0 %id)
AW873980 follicular carcinoma, thyroid .d 1778 to 2240 470 to 8       463/470
(98 %)
0 diff
(100 %id)
AW959500   .d 1779 to 2240 1 to 462       462/578
(79 %)
14 diff
(97.6 %id)
AI291859 carcinoid, lung .d 1780 to 2240 464 to 4       461/464
(99 %)
0 diff
(100 %id)
AW051606 Kidney .d 1787 to 2238 452 to 1       452/452
(100 %)
3 diff
(99.4 %id)
AA121289.
matches multiple genes
uterus .d 1793 to 2238 446 to 1     also hits gene metuma 446/446
(100 %)
0 diff
(100 %id)
AA121303.
matches multiple genes
uterus .d 1798 to 2238 443 to 1     also hits gene PPP3CA 443/443
(100 %)
2 diff
(99.6 %id)
BF437875 carcinoid, lung .d 1799 to 2244 449 to 4       446/511
(87 %)
0 diff
(100 %id)
AI291638 carcinoid, lung .d 1812 to 2240 429 to 1       429/429
(100 %)
3 diff
(99.4 %id)
AW084694 connective tissue, five pooled sarcomas, including myxoidliposarcoma, solitary fibrous tumor, malignant fibroushistiocytoma, gastrointestinal stromal tumor, andmesothelioma .d 1814 to 2238 425 to 1       425/425
(100 %)
2 diff
(99.6 %id)
AW002283 thymus, pooled .d 1842 to 2238 395 to 1       395/395
(100 %)
2 diff
(99.5 %id)
AI291864 carcinoid, lung .d 1853 to 2240 391 to 4       388/392
(98 %)
0 diff
(100 %id)
W80423 heart .d 1854 to 2239 389 to 1       389/453
(85 %)
4 diff
(99.2 %id)
AI961859 adenocarcinoma, Pancreas .d 1884 to 2238 355 to 1       355/355
(100 %)
0 diff
(100 %id)
AI370237 follicular lymphoma, lymph node .d 1899 to 2240 349 to 8       342/349
(97 %)
0 diff
(100 %id)
AI696330 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .d 1911 to 2238 328 to 1       328/328
(100 %)
0 diff
(100 %id)
N69016 lung .d 1952 to 2238 288 to 1   fully sequenced,   288/288
(100 %)
1 diff
(99.7 %id)
AA128005 uterus .d 1975 to 2238 271 to 1   fully sequenced,   271/271
(100 %)
1 diff
(99.7 %id)
AA045082 uterus .d 2009 to 2238 230 to 1   fully sequenced,   230/230
(100 %)
0 diff
(100 %id)
NM_001172743.1   .e 1 to 2426 1 to 2426 M252V RefSeq,   2426/2426
(100 %)
4 diff
(99.9 %id)
DC420191 uterus .e 40 to 600 1 to 561   tiling clone,   561/561
(100 %)
0 diff
(100 %id)
BX350223 Placenta Cot 25-normalized .e 437 to 1258 822 to 1       822/925
(88 %)
6 diff
(99.4 %id)
BP375960 uterus .e 446 to 1010 1 to 565       565/565
(100 %)
2 diff
(99.7 %id)
CN310161 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 461 to 1141 1 to 682       682/682
(100 %)
4 diff
(99.5 %id)
CV029454 mixed .e 462 to 1034 1 to 573       573/573
(100 %)
0 diff
(100 %id)
TI_1948136883   .e 462 to 1395 127 to 1066       940/1416
(66 %)
53 diff
(96.3 %id)
TI_1948136884   .e 462 to 1418 130 to 1079       950/1299
(73 %)
42 diff
(96.8 %id)
TI_1948137222   .e 462 to 1187 131 to 858       728/1411
(51 %)
6 diff
(99.6 %id)
TI_1948137223   .e 462 to 1208 129 to 879       751/1369
(54 %)
13 diff
(99.1 %id)
TI_1948137567   .e 462 to 1334 135 to 1024       890/1466
(60 %)
42 diff
(97.2 %id)
TI_1948137568   .e 462 to 1402 130 to 1075   tiling clone, AAA   946/1310
(72 %)
21 diff
(98.4 %id)
TI_1948137917   .e 462 to 1332 129 to 993       865/1368
(63 %)
64 diff
(95.4 %id)
TI_1948137918   .e 462 to 1478 130 to 1170       1041/1368
(76 %)
59 diff
(95.7 %id)
AA343822 gall bladder .e 696 to 956 1 to 260       260/260
(100 %)
2 diff
(99.3 %id)
BG484933 lung .e 746 to 1053 3 to 309       307/933
(32 %)
10 diff
(99.0 %id)
DA142735 alzheimer cortex .e 908 to 1462 2 to 556   capped   555/555
(100 %)
1 diff
(99.9 %id)
CA395859 eye, RPE/choroid .e 975 to 1570 1 to 596       596/596
(100 %)
1 diff
(99.9 %id)
M85370   .e 997 to 1324 327 to 1       327/327
(100 %)
3 diff
(99.1 %id)
BX382060 Placenta Cot 25-normalized .e 1035 to 2110 1067 to 1   tiling clone,   1067/1067
(100 %)
16 diff
(98.6 %id)
CD246042 White Matter .e 1040 to 1855 29 to 846       818/851
(96 %)
8 diff
(99.1 %id)
TI_1948137569   .e 1090 to 2059 1093 to 120       974/1097
(88 %)
0 diff
(100 %id)
BU076739 Pancreas, Purified pancreatic islet .e 1114 to 1763 17 to 666       650/666
(97 %)
8 diff
(98.8 %id)
TI_1948136885   .e 1117 to 2059 1070 to 122       949/1112
(85 %)
0 diff
(100 %id)
CK902457 Pancreas, Purified pancreatic islet .e 1158 to 1709 1 to 552     Submitted on the opposite strand 552/552
(100 %)
1 diff
(99.9 %id)
TI_1948137224   .e 1246 to 2059 945 to 117       829/1168
(70 %)
0 diff
(100 %id)
TI_1948137919   .e 1250 to 2059 933 to 119       815/1123
(72 %)
0 diff
(100 %id)
TI_1948137570   .e 1352 to 2059 848 to 132       717/1387
(51 %)
0 diff
(100 %id)
AA770598 carcinoid, lung .e 1414 to 1886 1 to 472     Submitted on the opposite strand 472/472
(100 %)
4 diff
(99.2 %id)
TI_1948136886   .e 1419 to 2059 766 to 123       644/1432
(44 %)
0 diff
(100 %id)
BF948027 nervous_normal .e 1488 to 1644 12 to 167       156/167
(93 %)
6 diff
(96.5 %id)
AI937418 anaplastic oligodendroglioma, brain .e 1661 to 2131 471 to 1       471/471
(100 %)
0 diff
(100 %id)
C01114   .e 1823 to 2104 1 to 282       282/282
(100 %)
1 diff
(99.7 %id)
BE503005 carcinoid, lung .e 1825 to 2130 306 to 1       306/306
(100 %)
0 diff
(100 %id)
BE670727 carcinoid, lung .e 1826 to 2132 309 to 3   tiling clone,   307/309
(99 %)
0 diff
(100 %id)
AI473514 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .e 1907 to 2129 256 to 34   AAA   223/223
(100 %)
3 diff
(98.7 %id)
NM_001172732.1   .f 1 to 2079 1 to 2079 M202V RefSeq,   2079/2079
(100 %)
4 diff
(99.9 %id)
DC419656 uterus .f 38 to 600 1 to 564   tiling clone,   564/564
(100 %)
2 diff
(99.7 %id)
AK298873   .f 40 to 1845 1 to 1806 M202V tiling clone,   1806/1806
(100 %)
3 diff
(99.9 %id)
DC362343 Kidney .f 40 to 402 1 to 363       363/363
(100 %)
0 diff
(100 %id)
DC366644   .f 40 to 613 1 to 574       574/574
(100 %)
0 diff
(100 %id)
DC367357   .f 42 to 365 1 to 324       324/324
(100 %)
1 diff
(99.7 %id)
DA494131 brain .g 1 to 503 2 to 504 exact tiling clone, capped   503/503
(100 %)
0 diff
(100 %id)
DB170247 kidney, tumor tissue .g 41 to 618 2 to 580   tiling clone, capped   579/579
(100 %)
1 diff
(99.9 %id)
DC358670 lung .h 1 to 593 1 to 593 exact tiling clone,   593/593
(100 %)
1 diff
(99.9 %id)
BG210052   .i 1 to 194 4 to 197 V67G H86P A91G A92S tiling clone,   735/816
(90 %)
40 diff
(95.1 %id)
DB265047 uterus .j 1 to 583 2 to 584 exact tiling clone, capped   583/583
(100 %)
0 diff
(100 %id)
AI014566 pooled .k 1 to 463 3 to 465 exact tiling clone, Submitted on the opposite strand 465/465
(100 %)
0 diff
(100 %id)
BP224079 colon mucosa .l 1 to 454 1 to 457 N27K Q31X W38X A55X A63X ... tiling clone,   457/520
(87 %)
5 diff
(99.1 %id)
BP262414 small intestine Gene RAI2, variant not shown         Suspected internal deletion, this clone was ignored    
BM706721 eye, optic nerve Gene RAI2, variant not shown         This clone was ignored    
BU728108 eye, optic nerve Gene RAI2, variant not shown       AAA This clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI