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Gene RACGAP1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
401 supporting clones for gene RACGAP1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_013277.3   .a 1 to 3314 2 to 3315 exact RefSeq,   3315/3315
(100 %)
0 diff
(100 %id)
DB093144 testis .a 31 to 583 2 to 554   tiling clone, capped   553/553
(100 %)
3 diff
(99.5 %id)
AL136794 testis .a 86 to 3312 1 to 3227 exact tiling clone, available from DKFZ, AAA   3227/3227
(100 %)
1 diff
(100.0 %id)
AL713621 testis .a 86 to 575 1 to 490       490/490
(100 %)
0 diff
(100 %id)
AL713622 testis .a 3168 to 3312 155 to 11   AAA   145/145
(100 %)
1 diff
(99.4 %id)
NM_001126103.1   .b 1 to 3325 2 to 3326 exact RefSeq,   3326/3326
(100 %)
0 diff
(100 %id)
DB065206 testis .b 14 to 544 2 to 532   tiling clone, capped   531/531
(100 %)
1 diff
(99.9 %id)
AK315785 trachea .b 30 to 2219 1 to 2190 D452G tiling clone,   2190/2190
(100 %)
1 diff
(100.0 %id)
DB235987 trachea .b 31 to 615 2 to 586   capped   585/585
(100 %)
0 diff
(100 %id)
DB076571 testis .c 1 to 575 2 to 576   tiling clone, capped   575/575
(100 %)
0 diff
(100 %id)
DB087715 testis .c 1 to 569 2 to 571   capped   570/570
(100 %)
2 diff
(99.7 %id)
DB092366 testis .c 2 to 546 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
BP359371 mammary gland .c 11 to 592 1 to 582       582/582
(100 %)
5 diff
(99.2 %id)
BG772045 testis .c 13 to 858 6 to 850       845/850
(99 %)
19 diff
(97.8 %id)
BU601198 mixed (pool of 40 RNAs) .c 18 to 814 1 to 804       804/845
(95 %)
15 diff
(98.3 %id)
DA507841 brain .c 21 to 602 2 to 584   capped   583/583
(100 %)
2 diff
(99.7 %id)
DB079404 testis .c 21 to 595 2 to 576   capped   575/575
(100 %)
0 diff
(100 %id)
BG700762 brain, hippocampus .c 25 to 761 1 to 735       735/742
(99 %)
13 diff
(98.3 %id)
BG703823 brain, hippocampus .c 25 to 670 1 to 647       647/647
(100 %)
9 diff
(98.7 %id)
BI553994 brain, hippocampus .c 25 to 854 1 to 826       826/826
(100 %)
22 diff
(97.4 %id)
BI552517 brain, hippocampus .c 25 to 731 1 to 711       711/927
(76 %)
14 diff
(98.5 %id)
BG720869 testis .c 26 to 731 1 to 703       703/703
(100 %)
9 diff
(98.8 %id)
DA408810 thalamus .c 27 to 677 2 to 653   capped   652/652
(100 %)
1 diff
(99.9 %id)
DB059473 testis .c 28 to 499 2 to 475   capped   474/474
(100 %)
2 diff
(99.6 %id)
DB469600 hippocampus .c 29 to 219 1 to 192       192/357
(53 %)
4 diff
(98.9 %id)
TI_44170689   .c 29 to 854 129 to 950       822/950
(86 %)
24 diff
(97.5 %id)
TI_44171172   .c 29 to 731 123 to 829       707/1045
(67 %)
15 diff
(98.6 %id)
BP199770 brain .c 30 to 610 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DB467022 hippocampus .c 30 to 312 1 to 284       284/321
(88 %)
28 diff
(91.3 %id)
BP247405 Kidney .c 30 to 612 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DA292061 hippocampus .c 31 to 499 2 to 473   capped   472/472
(100 %)
3 diff
(99.4 %id)
BP245765 Kidney .c 31 to 603 1 to 576       576/582
(98 %)
6 diff
(99.0 %id)
DA600038   .c 31 to 587 2 to 558   capped   557/557
(100 %)
1 diff
(99.9 %id)
DB091274 testis .c 31 to 595 2 to 566   capped   565/565
(100 %)
0 diff
(100 %id)
DB093804 testis .c 31 to 565 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DB094652 testis .c 31 to 590 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DB096746 testis .c 31 to 613 2 to 584   capped   583/583
(100 %)
0 diff
(100 %id)
DB102732 thymus .c 31 to 582 2 to 553   capped   552/552
(100 %)
0 diff
(100 %id)
DB132755 thymus .c 31 to 565 2 to 536   capped   535/535
(100 %)
0 diff
(100 %id)
DB159928 thymus .c 31 to 631 2 to 603   capped   602/602
(100 %)
1 diff
(99.9 %id)
DA489723 brain .c 32 to 598 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
BP365076 lung .c 32 to 612 1 to 581       581/581
(100 %)
0 diff
(100 %id)
DA485875 brain .c 33 to 621 2 to 591   capped   590/590
(100 %)
3 diff
(99.5 %id)
DB021031 testis .c 34 to 593 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
DB048859 testis .c 35 to 588 8 to 562   capped   555/555
(100 %)
2 diff
(99.7 %id)
DA396229 thalamus .c 36 to 610 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DA748946   .c 36 to 597 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB090802 testis .c 36 to 597 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA705605   .c 37 to 533 2 to 498   capped   497/497
(100 %)
1 diff
(99.8 %id)
DB040358 testis .c 37 to 602 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DB074433 testis .c 37 to 565 2 to 531   capped   530/531
(99 %)
2 diff
(99.7 %id)
DB096802 testis .c 37 to 573 2 to 538   capped   537/537
(100 %)
0 diff
(100 %id)
DB155783 thymus .c 37 to 595 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DB444172 testis .c 41 to 482 1 to 441       441/441
(100 %)
2 diff
(99.6 %id)
DB445153 testis .c 41 to 473 1 to 433       433/433
(100 %)
1 diff
(99.8 %id)
TI_44349919   .c 42 to 618 125 to 704   AAA   580/883
(65 %)
16 diff
(98.2 %id)
BP359394 mammary gland .c 43 to 622 1 to 582       580/582
(99 %)
6 diff
(99.0 %id)
DA023429   .c 44 to 611 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
BI562010 testis .c 44 to 618 1 to 579       579/772
(75 %)
13 diff
(98.4 %id)
DB076312 testis .c 44 to 599 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
CN298640 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 45 to 812 1 to 768       768/768
(100 %)
2 diff
(99.8 %id)
BF794378 lymph, lymphoma, cell line .c 45 to 687 1 to 642       642/1079
(59 %)
11 diff
(99.0 %id)
DB450467 testis .c 47 to 487 1 to 441       441/441
(100 %)
1 diff
(99.8 %id)
DN994066 brain, whole brain .c 47 to 755 9 to 717       709/717
(98 %)
6 diff
(99.2 %id)
DB084124 testis .c 47 to 610 2 to 565   capped   564/564
(100 %)
1 diff
(99.9 %id)
DA477262   .c 48 to 598 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
BF529927 anaplastic oligodendroglioma with 1p/19qloss, brain .c 48 to 768 1 to 719       719/859
(83 %)
21 diff
(97.6 %id)
DB087303 testis .c 48 to 607 2 to 561   capped   560/560
(100 %)
0 diff
(100 %id)
CN298638 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .c 49 to 591 1 to 544       544/544
(100 %)
6 diff
(98.9 %id)
DB075817 testis .c 49 to 590 2 to 543   capped   542/542
(100 %)
0 diff
(100 %id)
DA749136   .c 54 to 633 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DA543855   .c 56 to 616 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
DA480024   .c 62 to 617 2 to 557   capped   556/556
(100 %)
0 diff
(100 %id)
DB134426 thymus .c 64 to 611 2 to 550   capped   549/549
(100 %)
2 diff
(99.7 %id)
CD705650 normal nasopharynx .c 66 to 520 23 to 478       456/478
(95 %)
8 diff
(98.4 %id)
BQ218534 leiomyosarcoma, uterus .c 68 to 885 1 to 821       821/1033
(79 %)
17 diff
(98.4 %id)
DB444188 testis .c 69 to 515 1 to 447       447/447
(100 %)
4 diff
(99.2 %id)
BI462178 testis .c 71 to 785 1 to 715       715/917
(77 %)
8 diff
(99.2 %id)
BE886172 leiomyosarcoma, uterus .c 74 to 761 1 to 690       690/1129
(61 %)
20 diff
(98.3 %id)
BM909802 astrocytoma grade IV, cell line, brain .c 76 to 1011 21 to 959       943/1064
(88 %)
38 diff
(96.5 %id)
BP365058 lung .c 76 to 658 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA446127 tongue, tumor tissue .c 77 to 635 2 to 560   capped   559/560
(99 %)
1 diff
(99.9 %id)
DB161644 thymus .c 77 to 654 2 to 579   capped   578/578
(100 %)
0 diff
(100 %id)
BG330512 large cell carcinoma, lung .c 80 to 774 1 to 694       694/997
(69 %)
18 diff
(98.2 %id)
DR762615 embryonic stem .c 80 to 866 1 to 787       787/787
(100 %)
0 diff
(100 %id)
BC032754 Testis, embryonal carcinoma .c 81 to 3133 12 to 3064 exact tiling clone, available from MGC, AAA   3053/3053
(100 %)
1 diff
(100.0 %id)
BX394054 Neuroblastoma Cot 25-normalized .c 82 to 1132 1 to 1052       1052/1097
(95 %)
14 diff
(98.8 %id)
BM457071 embryonal carcinoma, cell line, testis .c 82 to 986 1 to 907       907/1014
(89 %)
15 diff
(98.6 %id)
BP279601   .c 84 to 670 1 to 587       587/587
(100 %)
1 diff
(99.9 %id)
DA567419   .c 87 to 629 2 to 544   capped   543/543
(100 %)
1 diff
(99.9 %id)
DB156641 thymus .c 87 to 679 2 to 594   capped   593/594
(99 %)
0 diff
(100 %id)
BI093200 cervix .c 93 to 945 1 to 852       852/854
(99 %)
16 diff
(98.2 %id)
BG682966 brain, neuroblastoma, cell line .c 101 to 832 1 to 734       734/734
(100 %)
11 diff
(98.6 %id)
BU147006 brain, neuroblastoma, cell line .c 105 to 986 1 to 887       887/888
(99 %)
21 diff
(97.7 %id)
BU151317 brain, neuroblastoma, cell line .c 106 to 997 1 to 890       892/890
(100 %)
10 diff
(98.9 %id)
CN298641 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .c 114 to 666 1 to 553       553/553
(100 %)
1 diff
(99.9 %id)
NM_001126104.1   .d 1 to 3205 2 to 3206 exact RefSeq,   3206/3206
(100 %)
0 diff
(100 %id)
BP284083 bone marrow .d 61 to 642 1 to 582   tiling clone,   582/588
(98 %)
2 diff
(99.7 %id)
DA989371 synovial membrane tissue from rheumatioidarthritis .d 62 to 569 2 to 512   capped   511/511
(100 %)
3 diff
(99.5 %id)
DA441098 tongue, tumor tissue .d 70 to 637 2 to 569   capped   568/568
(100 %)
1 diff
(99.9 %id)
BU167875 leiomyosarcoma, uterus .d 74 to 946 1 to 882   tiling clone,   882/902
(97 %)
13 diff
(98.6 %id)
DA736758   .d 80 to 840 2 to 762   capped   761/764
(99 %)
4 diff
(99.5 %id)
DA990602 synovial membrane tissue from rheumatioidarthritis .d 82 to 634 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DB136484 thymus .d 82 to 445 2 to 367   capped   366/366
(100 %)
2 diff
(99.5 %id)
BP359776 mammary gland .d 85 to 676 1 to 594       594/594
(100 %)
16 diff
(97.4 %id)
DA810061 brain .d 89 to 649 2 to 565   capped   564/564
(100 %)
3 diff
(99.5 %id)
BP248660 Kidney .d 91 to 673 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
BP356864 mammary gland .d 91 to 673 1 to 583       583/583
(100 %)
1 diff
(99.9 %id)
DA807476 brain .d 92 to 649 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB153634 thymus .d 103 to 696 2 to 595   capped   594/602
(98 %)
3 diff
(99.6 %id)
CN298636 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .d 105 to 821 1 to 717       717/717
(100 %)
1 diff
(99.9 %id)
DA659833   .d 115 to 663 2 to 550   capped   549/549
(100 %)
0 diff
(100 %id)
BP314263 mammary gland .d 116 to 700 1 to 581       585/581
(100 %)
8 diff
(98.7 %id)
DB133084 thymus .d 116 to 660 2 to 546   capped   545/545
(100 %)
0 diff
(100 %id)
BU154041 eye, retinoblastoma .d 118 to 926 1 to 814       814/876
(92 %)
7 diff
(99.3 %id)
AK000733   .d 124 to 3203 1 to 3079 D155H available from FLJ,   3079/3079
(100 %)
4 diff
(99.9 %id)
DB141319 thymus .d 125 to 665 2 to 543   capped   542/542
(100 %)
2 diff
(99.7 %id)
AB030251   .d 131 to 3175 1 to 3045 L518S     3045/3050
(99 %)
8 diff
(99.8 %id)
BE884298 leiomyosarcoma, uterus .d 137 to 770 1 to 634       634/634
(100 %)
5 diff
(99.3 %id)
BE903491 choriocarcinoma, placenta .d 138 to 817 1 to 681       681/681
(100 %)
6 diff
(99.2 %id)
BG479200 choriocarcinoma, placenta .d 145 to 979 1 to 836       834/836
(99 %)
15 diff
(98.3 %id)
BC024144 Placenta, choriocarcinoma .d 146 to 3166 1 to 3022 L171W V172* available from MGC, AAA   3022/3022
(100 %)
4 diff
(99.9 %id)
BE734951 choriocarcinoma, placenta .d 149 to 949 37 to 830   available from MGC,   794/831
(95 %)
20 diff
(97.6 %id)
DB019170 esophageal, tumor tissue .d 151 to 722 2 to 574   capped   573/573
(100 %)
1 diff
(99.9 %id)
DB075862 testis .d 151 to 708 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB079860 testis .d 151 to 724 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DB119730 thymus .d 151 to 712 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DB159680 thymus .d 151 to 737 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
DB131101 thymus .d 155 to 669 2 to 517   capped   516/516
(100 %)
1 diff
(99.9 %id)
BI088008 cervix .d 160 to 696 1 to 545       545/883
(61 %)
19 diff
(97.9 %id)
BE731400 choriocarcinoma, placenta .d 167 to 944 1 to 780       780/843
(92 %)
14 diff
(98.4 %id)
BE731263 choriocarcinoma, placenta .d 167 to 938 1 to 769       769/808
(95 %)
8 diff
(99.1 %id)
DB163602 thymus .d 174 to 749 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
AK225901   .d 196 to 2388 1 to 2193 D155H     2193/2193
(100 %)
2 diff
(100.0 %id)
BX364289   .d 196 to 949 1 to 763       763/763
(100 %)
25 diff
(96.8 %id)
CN298645 embryonic stem cells, DMSO-treated H9 cellline .d 200 to 659 1 to 460       460/460
(100 %)
0 diff
(100 %id)
CR533565   .d 201 to 2178 1 to 1978 exact     1978/1978
(100 %)
4 diff
(99.8 %id)
CV030848 mixed .d 201 to 846 1 to 643       643/656
(98 %)
13 diff
(98.1 %id)
TI_1948139572   .d 201 to 1056 127 to 990       749/1271
(58 %)
90 diff
(93.0 %id)
TI_1948139815   .d 201 to 1033 124 to 965       841/1306
(64 %)
30 diff
(97.8 %id)
BP357153 mammary gland .d 201 to 784 1 to 584       584/584
(100 %)
0 diff
(100 %id)
DA735499   .d 205 to 986 2 to 788   capped   787/844
(93 %)
11 diff
(98.7 %id)
DA555946   .d 217 to 783 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
DA603003   .d 220 to 770 2 to 552   capped   551/551
(100 %)
0 diff
(100 %id)
BF541281 hypernephroma, Kidney .d 222 to 818 1 to 593       593/852
(69 %)
16 diff
(98.2 %id)
BM909314 lymph, lymphoma, cell line .d 258 to 1219 1 to 965       965/1035
(93 %)
9 diff
(99.2 %id)
BQ057132 lymph, lymphoma, cell line .d 258 to 1085 1 to 828       828/944
(87 %)
5 diff
(99.5 %id)
BQ057407 lymph, lymphoma, cell line .d 258 to 955 1 to 704       704/978
(71 %)
17 diff
(98.3 %id)
BE272652 Kidney, renal cell adenocarcinoma .d 290 to 941 1 to 654       654/654
(100 %)
9 diff
(98.7 %id)
BG748486 eye, normal pigmented retinal epithelium .d 306 to 978 1 to 674       674/674
(100 %)
3 diff
(99.6 %id)
CN298639 embryonic stem cells, cell lines H1, H7, andH9 .d 310 to 746 1 to 437       437/437
(100 %)
0 diff
(100 %id)
AB040911   .d 386 to 3203 1 to 2818   tiling clone, available from KIAA,   2818/2818
(100 %)
1 diff
(100.0 %id)
CN298642 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .d 428 to 1006 1 to 579       579/579
(100 %)
0 diff
(100 %id)
BM803381 leiomyosarcoma, uterus .d 635 to 1245 1 to 612       612/1357
(45 %)
7 diff
(99.5 %id)
AA315466 colon .d 644 to 1127 1 to 484       484/484
(100 %)
0 diff
(100 %id)
AW960361   .d 645 to 1081 1 to 438       438/572
(76 %)
7 diff
(98.8 %id)
BQ215925 embryonal carcinoma, cell line, testis .d 651 to 1475 1 to 830       830/850
(97 %)
8 diff
(99.1 %id)
DA731196   .d 689 to 1339 2 to 652   capped   651/651
(100 %)
3 diff
(99.6 %id)
BE882121 leiomyosarcoma, uterus .d 696 to 1340 1 to 644       644/948
(67 %)
11 diff
(98.9 %id)
BQ217059 embryonal carcinoma, cell line, testis .d 707 to 1456 1 to 756       756/908
(83 %)
17 diff
(98.2 %id)
BE076499 breast .d 720 to 1394 15 to 685       671/705
(95 %)
20 diff
(97.2 %id)
BM019416 astrocytoma grade IV, cell line, brain .d 869 to 1645 1 to 786       784/821
(95 %)
14 diff
(98.3 %id)
TI_59390098   .d 870 to 1645 110 to 894       783/820
(95 %)
13 diff
(98.5 %id)
BG289047 bladder, transitional cell papilloma, cell line .d 891 to 1619 1 to 730       729/961
(75 %)
25 diff
(97.4 %id)
AA099065   .d 917 to 1096 1 to 179       179/179
(100 %)
4 diff
(97.8 %id)
BI092422 cervix .d 929 to 1739 1 to 815       815/817
(99 %)
10 diff
(98.8 %id)
BG323825 Kidney, renal cell adenocarcinoma .d 933 to 1638 1 to 712       712/1123
(63 %)
17 diff
(98.5 %id)
BG684804 B-cells, primary B-cells from tonsils (cell line) .d 946 to 1726 1 to 781       781/781
(100 %)
6 diff
(99.3 %id)
DA540496 lung .d 987 to 1539 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BI040770 nervous_tumor .d 1013 to 1321 2 to 309       308/309
(99 %)
18 diff
(94.2 %id)
DA697269   .d 1088 to 1639 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DA731320   .d 1126 to 1907 2 to 782   capped   781/781
(100 %)
7 diff
(99.2 %id)
EH342514   .d 1141 to 1218 1 to 78       78/78
(100 %)
1 diff
(98.8 %id)
BU187575 eye, retinoblastoma .d 1150 to 2022 1 to 875       875/877
(99 %)
10 diff
(98.9 %id)
BG820884 anaplastic oligodendroglioma with 1p/19qloss, brain .d 1195 to 1928 1 to 733       733/735
(99 %)
13 diff
(98.3 %id)
BX367703   .d 1243 to 2162 1 to 920       920/920
(100 %)
0 diff
(100 %id)
BX400548   .d 1243 to 1944 1 to 702       702/702
(100 %)
0 diff
(100 %id)
CB119849 Liver .d 1259 to 1727 1 to 469       469/469
(100 %)
1 diff
(99.8 %id)
AI147437   .d 1269 to 1790 1 to 522       522/522
(100 %)
1 diff
(99.9 %id)
BM451478 eye, retinoblastoma .d 1306 to 2151 13 to 866       854/944
(90 %)
27 diff
(97.2 %id)
TI_1948139816   .d 1329 to 2098 894 to 124       771/1274
(60 %)
9 diff
(99.3 %id)
TI_1948139573   .d 1339 to 2098 885 to 125       761/1280
(59 %)
3 diff
(99.8 %id)
BX374348 Neuroblastoma Cot 10-normalized .d 1341 to 2215 1 to 878       878/878
(100 %)
8 diff
(99.1 %id)
BX388364 Neuroblastoma Cot 10-normalized .d 1341 to 2333 1 to 992       992/992
(100 %)
5 diff
(99.5 %id)
BF802910 colon_ins .d 1349 to 1768 1 to 420       420/421
(99 %)
3 diff
(99.3 %id)
CD300174 testis .d 1368 to 2210 24 to 865       842/865
(97 %)
11 diff
(98.8 %id)
BI037425 nervous_tumor .d 1384 to 1731 356 to 11       346/356
(97 %)
0 diff
(100 %id)
DB113712 thymus .d 1384 to 1949 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
AK022726   .d 1389 to 3175 80 to 1866   available from FLJ,   1787/1866
(95 %)
7 diff
(99.7 %id)
AU125805   .d 1389 to 2043 80 to 734   capped   655/733
(89 %)
12 diff
(98.4 %id)
DA907810   .d 1405 to 2271 2 to 868   capped   867/871
(99 %)
14 diff
(98.4 %id)
U82984 whole brain .d 1453 to 3203 1 to 1750   AAA   1750/1750
(100 %)
5 diff
(99.8 %id)
CB115198 Liver .d 1516 to 2114 599 to 1     Submitted on the opposite strand 599/599
(100 %)
0 diff
(100 %id)
AW367648 head_neck .d 1537 to 1753 22 to 237       219/237
(92 %)
7 diff
(97.1 %id)
AW367678 head_neck .d 1537 to 1753 22 to 237       219/237
(92 %)
7 diff
(97.1 %id)
CB123476 Liver .d 1537 to 2122 586 to 1     Submitted on the opposite strand 586/588
(99 %)
1 diff
(99.9 %id)
CB119635 Liver .d 1543 to 2122 582 to 1     Submitted on the opposite strand 582/582
(100 %)
6 diff
(99.0 %id)
BF802908 colon_ins .d 1567 to 1901 335 to 1     Submitted on the opposite strand 335/335
(100 %)
2 diff
(99.5 %id)
CU453756 epidermis .d 1601 to 1959 1 to 358       358/358
(100 %)
9 diff
(97.5 %id)
BE879795 large cell carcinoma, undifferentiated, lung .d 1657 to 2370 1 to 711       711/732
(97 %)
10 diff
(98.7 %id)
R58524   .d 1670 to 1914 1 to 266       266/270
(98 %)
31 diff
(88.6 %id)
BM557222 melanotic melanoma, skin .d 1679 to 2680 1 to 1014       1014/1017
(99 %)
30 diff
(97.1 %id)
BF033311 adenocarcinoma, ovary .d 1680 to 2089 1 to 412       412/414
(99 %)
4 diff
(99.1 %id)
BG168731 hypernephroma, cell line, Kidney .d 1703 to 2523 1 to 836       836/922
(90 %)
32 diff
(96.6 %id)
BX347370   .d 1800 to 2394 1 to 592       592/876
(67 %)
8 diff
(99.1 %id)
BX282737 leiomyosarcoma, uterus .d 1823 to 2282 12 to 471       460/471
(97 %)
6 diff
(98.8 %id)
BE565843 bladder, carcinoma, cell line .d 1823 to 2505 1 to 675       675/690
(97 %)
19 diff
(97.3 %id)
BM800554 leiomyosarcoma, uterus .d 1825 to 2844 1 to 1033       1033/1050
(98 %)
40 diff
(96.2 %id)
BE898234 melanotic melanoma, skin .d 1829 to 2403 1 to 570       570/710
(80 %)
15 diff
(97.9 %id)
CB141439 Liver .d 1837 to 2387 1 to 551       551/551
(100 %)
0 diff
(100 %id)
BG687163 lung, mucoepidermoid carcinoma .d 1849 to 2530 37 to 725       689/871
(79 %)
26 diff
(97.1 %id)
BG496900 lung, mucoepidermoid carcinoma .d 1851 to 2565 1 to 735       702/735
(95 %)
29 diff
(96.1 %id)
BE727128 melanotic melanoma, skin .d 1860 to 2531 1 to 672       672/673
(99 %)
1 diff
(99.9 %id)
CD359428 testis .d 1864 to 2712 1 to 851       851/851
(100 %)
7 diff
(99.2 %id)
CB151547 cervix, Uterine .d 1869 to 2533 1 to 665       665/665
(100 %)
2 diff
(99.7 %id)
CB115269 Liver .d 1880 to 2052 173 to 1     Submitted on the opposite strand 173/173
(100 %)
5 diff
(97.2 %id)
BX343374   .d 1909 to 2329 1 to 412   fully sequenced,   412/412
(100 %)
1 diff
(99.8 %id)
BX343373   .d 2299 to 3170 862 to 1   fully sequenced,   862/862
(100 %)
4 diff
(99.6 %id)
AU149396   .d 2606 to 3175 566 to 1       566/566
(100 %)
23 diff
(96.0 %id)
DB363296   .d 2621 to 3203 568 to 1       568/570
(99 %)
27 diff
(95.3 %id)
AU153848   .d 2633 to 3203 569 to 1       569/569
(100 %)
12 diff
(97.9 %id)
AU152537   .d 2653 to 3203 549 to 1       549/551
(99 %)
15 diff
(97.3 %id)
DB363458   .d 2730 to 3203 472 to 1       472/558
(84 %)
8 diff
(98.6 %id)
DB331310   .d 2730 to 3203 474 to 2       473/530
(89 %)
0 diff
(100 %id)
AA098992   .d 2775 to 3190 424 to 1       424/465
(91 %)
11 diff
(97.7 %id)
DA779708 brain .e 1 to 576 2 to 577   tiling clone, capped   576/576
(100 %)
1 diff
(99.9 %id)
BG393566 embryonal carcinoma, cell line, testis .e 2516 to 3265 1 to 739   tiling clone,   739/951
(77 %)
16 diff
(98.4 %id)
BI089616 cervix .e 2569 to 3145 1 to 578       578/602
(96 %)
3 diff
(99.6 %id)
DB326168 brain .e 2928 to 3470 546 to 3   tiling clone,   544/546
(99 %)
0 diff
(100 %id)
BP314959 mammary gland .e 2947 to 3530 1 to 583   tiling clone,   583/583
(100 %)
10 diff
(98.3 %id)
DA836167 placenta .f 1 to 563 2 to 564   tiling clone, capped   563/563
(100 %)
0 diff
(100 %id)
BM045509 carcinoma, cell line, Prostate .f 50 to 905 1 to 857       857/1054
(81 %)
17 diff
(98.4 %id)
DB023315 testis .f 50 to 602 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BM550045 astrocytoma grade IV, cell line, brain .f 51 to 643 1 to 597       597/1159
(51 %)
17 diff
(98.6 %id)
DA502516 brain .f 52 to 620 2 to 570   capped   569/569
(100 %)
0 diff
(100 %id)
CN298643 embryonic stem cells, DMSO-treated H9 cellline .f 58 to 726 1 to 667       667/667
(100 %)
3 diff
(99.6 %id)
BM455516 lymph, lymphoma, cell line .f 72 to 981 1 to 919   tiling clone,   919/1009
(91 %)
15 diff
(98.6 %id)
BX367899 Placenta Cot 25-normalized .f 724 to 1564 1 to 844   tiling clone,   844/844
(100 %)
28 diff
(96.7 %id)
DA362566 subthalamic nucleus .g 1 to 548 10 to 557   tiling clone, capped   556/556
(100 %)
2 diff
(99.7 %id)
AA112382   .g 304 to 663 1 to 368   tiling clone,   368/368
(100 %)
11 diff
(97.1 %id)
AA112383   .g 1060 to 1446 389 to 2   tiling clone,   388/389
(99 %)
1 diff
(99.8 %id)
EC439745 Prostate .g 1318 to 1430 1 to 113       113/113
(100 %)
0 diff
(100 %id)
EC571260 Prostate .g 1319 to 1430 1 to 112       112/112
(100 %)
1 diff
(99.2 %id)
BI561793 testis .h 1 to 643 7 to 655   tiling clone,   647/704
(91 %)
24 diff
(96.6 %id)
TI_44350044   .h 1 to 643 124 to 772       650/821
(79 %)
24 diff
(97.1 %id)
BP247573 Kidney .h 27 to 607 1 to 581       581/581
(100 %)
1 diff
(99.9 %id)
DA051287   .h 28 to 602 2 to 576   capped   575/575
(100 %)
1 diff
(99.9 %id)
DB079128 testis .h 28 to 556 2 to 530   capped   529/529
(100 %)
0 diff
(100 %id)
DB158761 thymus .h 28 to 623 2 to 597   capped   596/596
(100 %)
0 diff
(100 %id)
BX421176 B cells (Ramos cell line) .h 34 to 975 17 to 955   tiling clone,   939/955
(98 %)
19 diff
(98.1 %id)
BM012802 brain, neuroblastoma, cell line .i 1 to 895 1 to 914 K182T R183E R184A S185L T186Y ... tiling clone,   914/935
(97 %)
43 diff
(95.5 %id)
TI_59382030   .i 2 to 895 97 to 1009 K182T R183E R184A S185L T186Y ...     913/934
(97 %)
42 diff
(95.6 %id)
BU858582 mixed (pool of 40 RNAs) .j -8 to 659 1 to 670   tiling clone,   670/781
(85 %)
11 diff
(98.6 %id)
DA508254 brain .j 3 to 580 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
DB156932 thymus .j 3 to 575 2 to 575   capped   574/574
(100 %)
1 diff
(99.9 %id)
DA927779 small intestine .j 6 to 570 2 to 567   capped   566/566
(100 %)
1 diff
(99.9 %id)
BP359202 mammary gland .j 29 to 613 1 to 585       585/585
(100 %)
2 diff
(99.7 %id)
BG387277 adenocarcinoma cell line, colon .j 30 to 659 1 to 639       637/970
(65 %)
35 diff
(96.4 %id)
BX359137 Placenta Cot 25-normalized .j 31 to 859 1 to 819       819/819
(100 %)
25 diff
(97.0 %id)
DA919850 small intestine .j 39 to 605 2 to 569   capped   568/568
(100 %)
3 diff
(99.5 %id)
DB164810 thymus .j 65 to 659 2 to 595   tiling clone, capped   594/594
(100 %)
0 diff
(100 %id)
CN298644 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .j 68 to 557 1 to 490       490/490
(100 %)
1 diff
(99.8 %id)
DB140512 thymus .j 88 to 635 2 to 549   capped   548/548
(100 %)
2 diff
(99.7 %id)
DB159957 thymus .j 570 to 1164 2 to 596   tiling clone, capped   595/595
(100 %)
1 diff
(99.9 %id)
BQ923596 leiomyosarcoma, uterus .k 1 to 889 1 to 894 N154E E155* tiling clone,   894/932
(95 %)
23 diff
(97.6 %id)
BG258163 embryonal carcinoma, cell line, testis .l 1 to 765 5 to 767 Q189T F190A V191L D192L G193M ... tiling clone,   767/946
(81 %)
21 diff
(97.8 %id)
DB159511 thymus .l 3 to 589 2 to 588   capped   587/587
(100 %)
1 diff
(99.9 %id)
BQ228488 embryonal carcinoma, cell line, testis .m 1 to 697 1 to 700 T223D R224H S225G R226A R227E ... tiling clone,   700/933
(75 %)
7 diff
(99.3 %id)
DB100398 testis .n 1 to 575 7 to 581   tiling clone, capped   580/580
(100 %)
0 diff
(100 %id)
DA812983   .n 18 to 844 2 to 823 K176N L177* tiling clone, capped   822/825
(99 %)
8 diff
(99.1 %id)
BF308084 muscle, rhabdomyosarcoma .n 39 to 624 1 to 585       585/585
(100 %)
2 diff
(99.7 %id)
BU940828 mixed (pool of 40 RNAs) .o 1 to 747 2 to 752 D171G S182P K188Q S199N V203C ... tiling clone,   752/789
(95 %)
17 diff
(97.9 %id)
DA783263 brain .p 1 to 581 2 to 582 exact tiling clone, capped   581/581
(100 %)
0 diff
(100 %id)
BP369996 testis .q 1 to 582 1 to 582 exact tiling clone,   582/582
(100 %)
2 diff
(99.7 %id)
DA500396 brain .r 1 to 569 2 to 570 exact tiling clone, capped   569/569
(100 %)
0 diff
(100 %id)
DB084617 testis .s 1 to 562 2 to 564 R9X N10E L11S F12V E13* tiling clone, capped   563/563
(100 %)
1 diff
(99.9 %id)
BP358534 mammary gland .t 1 to 580 2 to 582 T127A N138E E139* tiling clone,   582/582
(100 %)
4 diff
(99.4 %id)
DA692830   .u 1 to 539 2 to 542 L6P N7E V8C R9A N10E ... tiling clone, capped   541/541
(100 %)
2 diff
(99.7 %id)
DB042056 testis .va 1 to 569 2 to 571 L6X N7E V8C R9A N10E ... tiling clone, capped   570/570
(100 %)
2 diff
(99.7 %id)
DB099306 testis .vb 1 to 577 9 to 585   tiling clone, capped   584/584
(100 %)
3 diff
(99.5 %id)
DB090068 testis .vb 18 to 573 2 to 558   tiling clone, capped   557/557
(100 %)
1 diff
(99.9 %id)
CN298637 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .vb 66 to 458 1 to 393   tiling clone,   393/393
(100 %)
2 diff
(99.5 %id)
DB089267 testis .vc 1 to 550 2 to 551 exact tiling clone, capped   550/550
(100 %)
1 diff
(99.9 %id)
DB094476 testis .vd 1 to 563 2 to 564 exact tiling clone, capped   563/563
(100 %)
0 diff
(100 %id)
DB087791 testis .ve 1 to 529 3 to 531 exact tiling clone, capped   530/530
(100 %)
0 diff
(100 %id)
BF745885 breast .vf 1 to 273 1 to 273   tiling clone,   273/273
(100 %)
12 diff
(95.7 %id)
CR615917 B cells (Ramos cell line) Cot 25-normalized .vf 223 to 1484 1 to 1262   tiling clone,   1262/1262
(100 %)
0 diff
(100 %id)
CN296994 embryonic stem cells, cell lines H1, H7, andH9 .vf 226 to 768 7 to 549       543/549
(98 %)
0 diff
(100 %id)
AW629806 2 pooled high-grade transitional celltumors, genitourinary tract .vf 232 to 665 17 to 450       434/450
(96 %)
6 diff
(98.7 %id)
BE873104 adenocarcinoma, colon .vf 233 to 1028 1 to 798       798/861
(92 %)
26 diff
(97.0 %id)
BF382242 brain, primitive neuroectoderm .vf 236 to 862 1 to 615       615/853
(72 %)
28 diff
(96.8 %id)
BF218472 brain, glioblastoma .vf 258 to 975 1 to 711       711/730
(97 %)
19 diff
(97.4 %id)
BE568573 bladder, carcinoma, cell line .vf 277 to 944 1 to 665       665/665
(100 %)
19 diff
(97.2 %id)
BF668457 brain, primitive neuroectoderm .vf 294 to 811 1 to 513       513/772
(66 %)
9 diff
(98.9 %id)
DR156298 human embryonic stem cells differentiated toan early endodermal cell type .vf 294 to 1005 1 to 711       711/711
(100 %)
1 diff
(99.9 %id)
AW613369 2 pooled high-grade transitional celltumors, genitourinary tract .vf 1054 to 1517 464 to 1   tiling clone,   464/464
(100 %)
1 diff
(99.8 %id)
AW379754 head_neck .vg-u 1 to 492 1 to 495   tiling clone,   495/497
(99 %)
10 diff
(98.0 %id)
BX388503 Neuroblastoma Cot 10-normalized .vg-u 371 to 1104 1 to 732 exact     732/783
(93 %)
33 diff
(95.8 %id)
BI043892 ovary .vg-u 373 to 901 539 to 9 exact     531/541
(98 %)
0 diff
(100 %id)
BG677953 skin, squamous cell carcinoma .vg-u 381 to 1268 1 to 895 exact     895/895
(100 %)
22 diff
(97.6 %id)
BE549203 cervical carcinoma cell line, cervix .vg-u 387 to 1177 1 to 774 G7V R8E R9G V10L S11V ...     774/907
(85 %)
37 diff
(96.0 %id)
CN296995 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .vg-u 401 to 1133 1 to 733 exact tiling clone,   733/733
(100 %)
3 diff
(99.6 %id)
CN296996 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .vg-u 416 to 538 1 to 123       123/123
(100 %)
0 diff
(100 %id)
BU571075 brain, glioblastoma .vg-u 494 to 1117 1 to 625 exact     625/824
(75 %)
10 diff
(98.8 %id)
BE926635 breast .vg-u 510 to 699 1 to 191       191/201
(95 %)
6 diff
(97.1 %id)
BG528007 lung, mucoepidermoid carcinoma .vg-u 514 to 1174 1 to 657 exact     657/672
(97 %)
16 diff
(97.7 %id)
BF082611 breast .vg-u 519 to 714 196 to 2       195/202
(96 %)
0 diff
(100 %id)
BF082592 breast .vg-u 527 to 706 180 to 1       180/180
(100 %)
0 diff
(100 %id)
BF131247 hypernephroma, Kidney .vg-u 554 to 1031 1 to 475 L14W V15C V16D I17S L18F ...     475/491
(96 %)
12 diff
(97.6 %id)
CB053959 brain, glioblastoma (pooled) .vg-u 559 to 1048 3 to 492 exact fully sequenced,   490/492
(99 %)
5 diff
(99.0 %id)
BU194435 melanotic melanoma, skin .vg-u 584 to 1355 1 to 776 exact     776/922
(84 %)
23 diff
(97.6 %id)
BE894710 melanotic melanoma, skin .vg-u 649 to 1331 1 to 676 G7V R8E R9G V10L S11V ...     676/910
(74 %)
26 diff
(97.2 %id)
BG675406 skin .vg-u 708 to 1544 1 to 842       842/978
(86 %)
17 diff
(98.3 %id)
BG683699 brain, neuroblastoma, cell line .vg-u 715 to 1507 846 to 26       821/872
(94 %)
0 diff
(100 %id)
BE550059 carcinoid, lung .vg-u 731 to 1253 1 to 523     Submitted on the opposite strand 523/523
(100 %)
3 diff
(99.5 %id)
BF110772 carcinoid, lung .vg-u 731 to 1211 1 to 481     Submitted on the opposite strand 481/481
(100 %)
3 diff
(99.4 %id)
CA426709 cell lines, Chondrosarcoma .vg-u 752 to 1548 815 to 19   AAA   797/800
(99 %)
3 diff
(99.7 %id)
BX091454   .vg-u 829 to 1548 1 to 720   AAA   720/720
(100 %)
1 diff
(99.9 %id)
CK000641 mixed .vg-u 833 to 1548 783 to 77   AAA Submitted on the opposite strand 707/712
(99 %)
30 diff
(95.8 %id)
BU634151 cell lines, Chondrosarcoma .vg-u 862 to 1548 700 to 19   AAA   682/682
(100 %)
6 diff
(99.2 %id)
BE544308 cervical carcinoma cell line, cervix .vg-u 874 to 1531 1 to 652       652/653
(99 %)
12 diff
(98.2 %id)
AA399521   .vg-u 875 to 1174 1 to 297       297/297
(100 %)
8 diff
(97.4 %id)
BX388363 Neuroblastoma Cot 10-normalized .vg-u 890 to 1507 620 to 1       620/769
(80 %)
19 diff
(97.6 %id)
BU171297 melanotic melanoma, skin .vg-u 894 to 1548 1 to 655   AAA   655/655
(100 %)
3 diff
(99.6 %id)
CN296993 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .vg-u 895 to 1480 1 to 586       586/586
(100 %)
2 diff
(99.7 %id)
CR748340   .vg-u 895 to 1086 1 to 192       192/201
(95 %)
1 diff
(99.6 %id)
BE909719 epithelioid carcinoma, Pancreas .vg-u 898 to 1538 1 to 641       641/641
(100 %)
14 diff
(97.9 %id)
AA055420 heart .vg-u 900 to 1243 1 to 345   fully sequenced,   345/345
(100 %)
5 diff
(98.6 %id)
W25437 lung .vg-u 904 to 1190 1 to 288       288/293
(98 %)
11 diff
(96.3 %id)
AA476691.
matches multiple genes
  .vg-u 904 to 1341 1 to 436     also hits gene PPT2andEGFL8 436/436
(100 %)
3 diff
(99.4 %id)
W07005 lung .vg-u 905 to 1192 1 to 288   fully sequenced,   288/288
(100 %)
8 diff
(97.3 %id)
W04398 lung .vg-u 908 to 1284 1 to 381   fully sequenced,   381/381
(100 %)
10 diff
(97.4 %id)
AA436791   .vg-u 909 to 1483 13 to 587       575/587
(97 %)
6 diff
(99.0 %id)
AA427764   .vg-u 909 to 1211 1 to 300   fully sequenced,   300/300
(100 %)
3 diff
(99.0 %id)
W76058 heart .vg-u 917 to 1268 1 to 361   fully sequenced,   361/361
(100 %)
8 diff
(97.8 %id)
BG169483 hypernephroma, cell line, Kidney .vg-u 917 to 1548 2 to 630   AAA   629/630
(99 %)
6 diff
(99.1 %id)
BM726589 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vg-u 917 to 1290 1 to 374   fully sequenced,   374/374
(100 %)
1 diff
(99.8 %id)
TI_158432880   .vg-u 918 to 1548 722 to 92   AAA   631/877
(71 %)
3 diff
(99.7 %id)
W94695 heart .vg-u 923 to 1287 1 to 366   fully sequenced,   366/366
(100 %)
8 diff
(97.9 %id)
W65352 heart .vg-u 932 to 1317 1 to 386   fully sequenced,   386/386
(100 %)
6 diff
(98.5 %id)
BU607776 Human Lung Epithelial cells, lung .vg-u 932 to 1548 635 to 19   AAA   617/617
(100 %)
1 diff
(99.9 %id)
BU753540 placenta .vg-u 945 to 1548 622 to 18   AAA   605/605
(100 %)
2 diff
(99.7 %id)
BP385967 pancreatic islet .vg-u 950 to 1524 1 to 575     Submitted on the opposite strand 575/575
(100 %)
4 diff
(99.4 %id)
BX359136 Placenta Cot 25-normalized .vg-u 973 to 1520 546 to 1       546/1004
(54 %)
12 diff
(98.9 %id)
BI090151 cervix .vg-u 980 to 1551 1 to 575   tiling clone, AAA   575/575
(100 %)
6 diff
(99.0 %id)
AW026650 brain, glioblastoma (pooled) .vg-u 987 to 1550 567 to 4       564/567
(99 %)
0 diff
(100 %id)
AW006959 colon .vg-u 993 to 1548 557 to 1       557/557
(100 %)
2 diff
(99.7 %id)
AI688608 colon .vg-u 994 to 1550 559 to 3       557/559
(99 %)
0 diff
(100 %id)
CF528660 placenta .vg-u 998 to 1548 568 to 18   AAA   551/551
(100 %)
1 diff
(99.9 %id)
BG942420 blood .vg-u 1005 to 1539 1 to 536       536/536
(100 %)
6 diff
(98.9 %id)
BG942493 blood .vg-u 1005 to 1394 1 to 390       390/390
(100 %)
1 diff
(99.8 %id)
CB053958 brain, glioblastoma (pooled) .vg-u 1018 to 1548 560 to 31   fully sequenced, AAA   530/530
(100 %)
2 diff
(99.7 %id)
BQ013086 placenta .vg-u 1031 to 1548 536 to 19   AAA   518/518
(100 %)
1 diff
(99.9 %id)
TI_157602390   .vg-u 1036 to 1548 604 to 92   AAA   513/513
(100 %)
1 diff
(99.9 %id)
AA984125 schizophrenic brain S-11 frontal lobe .vg-u 1054 to 1537 483 to 1       483/483
(100 %)
1 diff
(99.8 %id)
CF529425 placenta .vg-u 1057 to 1548 510 to 19   AAA   492/492
(100 %)
1 diff
(99.8 %id)
AI371033 lung .vg-u 1060 to 1550 494 to 4   tiling clone,   491/494
(99 %)
0 diff
(100 %id)
BF791697 adrenal cortex carcinoma, cell line, adrenal gland .vg-u 1076 to 1548 1 to 470   AAA   470/470
(100 %)
4 diff
(99.2 %id)
AI198836   .vg-u 1077 to 1548 496 to 25   AAA   472/472
(100 %)
1 diff
(99.8 %id)
AI130960 heart .vg-u 1082 to 1549 468 to 1       468/468
(100 %)
1 diff
(99.8 %id)
AI364509 anaplastic oligodendroglioma, brain .vg-u 1088 to 1548 461 to 1       461/461
(100 %)
1 diff
(99.8 %id)
AA629073   .vg-u 1091 to 1550 460 to 2       459/460
(99 %)
0 diff
(100 %id)
AA719375   .vg-u 1095 to 1550 460 to 6       455/460
(98 %)
0 diff
(100 %id)
DB515899 testis .vg-u 1097 to 1548 1 to 452     Submitted on the opposite strand 452/452
(100 %)
2 diff
(99.6 %id)
AA521487 germinal center B cell .vg-u 1104 to 1548 457 to 13   AAA   445/453
(98 %)
1 diff
(99.8 %id)
DB525636 testis .vg-u 1107 to 1546 1 to 440     Submitted on the opposite strand 440/442
(99 %)
2 diff
(99.6 %id)
DB537202 hippocampus .vg-u 1108 to 1546 1 to 441     Submitted on the opposite strand 441/443
(99 %)
4 diff
(99.1 %id)
AI312645 lung .vg-u 1127 to 1549 423 to 1       423/424
(99 %)
0 diff
(100 %id)
AI697315 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .vg-u 1127 to 1548 442 to 21   AAA   422/422
(100 %)
0 diff
(100 %id)
N73956 lung .vg-u 1128 to 1548 421 to 1       421/426
(98 %)
6 diff
(98.6 %id)
AA722884 heart .vg-u 1128 to 1548 450 to 30   AAA   421/421
(100 %)
1 diff
(99.8 %id)
AA865130 pooled germ cell tumors .vg-u 1128 to 1550 427 to 5       423/427
(99 %)
0 diff
(100 %id)
DB533949 hippocampus .vg-u 1130 to 1548 1 to 418     Submitted on the opposite strand 418/418
(100 %)
12 diff
(97.2 %id)
AI610576 serous papillary carcinoma, high grade, 2pooled tumors, uterus .vg-u 1131 to 1494 365 to 1       365/365
(100 %)
4 diff
(99.0 %id)
AI025358 parathyroid gland, parathyroid tumor .vg-u 1132 to 1550 423 to 5       419/423
(99 %)
0 diff
(100 %id)
AA634417   .vg-u 1139 to 1550 414 to 3       412/414
(99 %)
0 diff
(100 %id)
AI571826 anaplastic oligodendroglioma, brain .vg-u 1141 to 1548 408 to 1       408/409
(99 %)
1 diff
(99.8 %id)
AA947609 2 pooled tumors (clear cell type), Kidney .vg-u 1143 to 1550 409 to 2       408/409
(99 %)
0 diff
(100 %id)
AA922829 pooled germ cell tumors .vg-u 1152 to 1549 397 to 1       397/397
(100 %)
1 diff
(99.8 %id)
AI128204 uterus .vg-u 1152 to 1550 400 to 2       399/400
(99 %)
0 diff
(100 %id)
AA628611   .vg-u 1153 to 1550 401 to 5       397/401
(99 %)
0 diff
(100 %id)
AA830738 germinal center B cell .vg-u 1156 to 1548 401 to 11   AAA   391/391
(100 %)
2 diff
(99.5 %id)
AI092175 heart .vg-u 1156 to 1548 393 to 1       393/393
(100 %)
0 diff
(100 %id)
N80043 lung .vg-u 1162 to 1548 389 to 1   fully sequenced,   389/389
(100 %)
3 diff
(99.3 %id)
DB510166 testis .vg-u 1163 to 1548 1 to 386     Submitted on the opposite strand 386/386
(100 %)
2 diff
(99.5 %id)
AA425657   .vg-u 1181 to 1553 372 to 1   fully sequenced,   372/372
(100 %)
3 diff
(99.2 %id)
BQ010535 placenta .vg-u 1182 to 1548 384 to 18   AAA   367/367
(100 %)
2 diff
(99.5 %id)
R46716 whole brain .vg-u 1189 to 1550 373 to 7       367/467
(78 %)
0 diff
(100 %id)
AI034117 parathyroid gland, parathyroid tumor .vg-u 1193 to 1550 362 to 5       358/362
(98 %)
0 diff
(100 %id)
AA398402   .vg-u 1199 to 1548 350 to 1       350/350
(100 %)
0 diff
(100 %id)
AI283877 adenocarcinoma, colon .vg-u 1199 to 1550 357 to 6       352/357
(98 %)
0 diff
(100 %id)
AA054958 heart .vg-u 1213 to 1549 339 to 1   fully sequenced,   339/339
(100 %)
1 diff
(99.8 %id)
AI351493   .vg-u 1213 to 1440 228 to 1       228/237
(96 %)
2 diff
(99.2 %id)
N93587 lung .vg-u 1217 to 1550 339 to 4       336/339
(99 %)
0 diff
(100 %id)
W72501 heart .vg-u 1238 to 1550 323 to 1   fully sequenced,   323/323
(100 %)
0 diff
(100 %id)
AI582692 anaplastic oligodendroglioma, brain .vg-u 1245 to 1548 304 to 1       304/304
(100 %)
1 diff
(99.7 %id)
AA610073   .vg-u 1249 to 1550 303 to 3       301/303
(99 %)
0 diff
(100 %id)
N74297 lung .vg-u 1254 to 1548 299 to 1   fully sequenced,   299/299
(100 %)
6 diff
(98.0 %id)
W94568 heart .vg-u 1257 to 1506 255 to 1   fully sequenced,   255/255
(100 %)
3 diff
(98.9 %id)
BM681238 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vg-u 1260 to 1548 306 to 19   fully sequenced, AAA   288/288
(100 %)
1 diff
(99.7 %id)
AA862229 ovary .vg-u 1283 to 1549 268 to 1       268/268
(100 %)
2 diff
(99.3 %id)
W61248 heart .vg-u 1287 to 1548 267 to 1   fully sequenced,   267/267
(100 %)
0 diff
(100 %id)
DN916666   .vg-u 1288 to 1548 1 to 261   AAA   261/261
(100 %)
1 diff
(99.7 %id)
AA514003 Ewing's sarcoma .vg-u 1296 to 1548 287 to 35   AAA   253/260
(97 %)
1 diff
(99.7 %id)
CA455686 mixed (pool of 40 RNAs) .vg-u 1315 to 1522 1 to 208       208/208
(100 %)
2 diff
(99.1 %id)
AA862811 pooled germ cell tumors .vg-u 1322 to 1548 226 to 1       226/226
(100 %)
1 diff
(99.6 %id)
AI887028 anaplastic oligodendroglioma, brain .vg-u 1337 to 1550 214 to 1       214/214
(100 %)
2 diff
(99.1 %id)
AA888124 colon, colon tumor RER+ .vg-u 1351 to 1547 198 to 1       198/198
(100 %)
1 diff
(99.5 %id)
AI160477 heart .vg-u 1358 to 1550 195 to 3       193/195
(98 %)
0 diff
(100 %id)
AA872754.
matches multiple genes
2 pooled tumors (clear cell type), Kidney .vg-u 1412 to 1550 141 to 3   tiling clone, also hits gene kerteebo 139/141
(98 %)
0 diff
(100 %id)
BQ351693 head_neck .vh-u 1 to 287 297 to 10 S2P L5S L6T L7F L8V ... tiling clone,   288/327
(88 %)
0 diff
(100 %id)
BU944973 mixed (pool of 40 RNAs) .vi 1 to 167 1 to 167 exact tiling clone, AAA   167/167
(100 %)
3 diff
(98.3 %id)
BE143901 head_neck Gene RACGAP1, variant not shown              
BE143955 head_neck Gene RACGAP1, variant not shown              
BF082582 breast Gene RACGAP1, variant not shown         This clone was ignored    
BF901109 marrow Gene RACGAP1, variant not shown         This clone was ignored    
DA077819 cerebellum Gene RACGAP1, variant not shown       capped      
DB309340 hippocampus Gene RACGAP1, variant not shown         This clone was ignored    
DA325242 hippocampus Gene RACGAP1, variant not shown       capped This clone was ignored    
CR603322 Neuroblastoma Cot 10-normalized Gene RACGAP1, variant not shown         Suspected internal deletion, this clone was ignored    
CV314861 head_neck Gene RACGAP1, variant not shown              
AV697306.
matches multiple genes
hepatocellular carcinoma Gene seyflabu, variant not shown         This clone was ignored, also hits gene seyflabu    
AV697306.
matches multiple genes
hepatocellular carcinoma Gene RACGAP1, variant not shown         This clone was ignored, also hits gene seyflabu    
AV699413.
matches multiple genes
hepatocellular carcinoma Gene seyflabu, variant not shown         This clone was ignored, also hits gene seyflabu    
AV699413.
matches multiple genes
hepatocellular carcinoma Gene RACGAP1, variant not shown         This clone was ignored, also hits gene seyflabu    
DB318452   Gene RACGAP1, variant not shown              
DA554864   Gene RACGAP1, variant not shown       capped      
T93897 liver and spleen Gene RACGAP1, variant not shown              
T93947 liver and spleen Gene RACGAP1, variant not shown              
AA676522 liver and spleen Gene RACGAP1, variant not shown              
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve, .vf, .vg-u, .vh-u, .vi Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI