To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene RABGAP1LTABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
431 supporting clones for gene RABGAP1L back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
BY797682 eye .a 1 to 522 1 to 523   tiling clone,   523/527
(99 %)
2 diff
(99.7 %id)
DA397784 thalamus .a 66 to 628 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
NM_014857.3   .a 77 to 3003 1 to 2927   RefSeq, AAA   2927/2927
(100 %)
0 diff
(100 %id)
BI912860 brain .a 78 to 935 1 to 862       862/865
(99 %)
11 diff
(98.8 %id)
BM562112 leukocyte .a 85 to 596 70 to 586       517/1366
(37 %)
20 diff
(98.6 %id)
TI_57238129   .a 86 to 935 41 to 889       849/892
(95 %)
13 diff
(98.6 %id)
TI_57176570   .a 92 to 693 61 to 658       598/658
(90 %)
8 diff
(98.8 %id)
DB154120 thymus .a 97 to 656 2 to 561   capped   560/560
(100 %)
2 diff
(99.7 %id)
AK095838   .a 98 to 2996 1 to 2899   available from FLJ, AAA   2899/2912
(99 %)
3 diff
(99.9 %id)
DA454646 tongue, tumor tissue .a 99 to 664 2 to 567   capped   566/566
(100 %)
0 diff
(100 %id)
DA551525   .a 99 to 601 2 to 505   capped   504/504
(100 %)
2 diff
(99.7 %id)
DA785874 brain .a 99 to 678 2 to 581   capped   580/580
(100 %)
0 diff
(100 %id)
DB138072 thymus .a 99 to 636 2 to 539   capped   538/538
(100 %)
0 diff
(100 %id)
BI830040 brain, medulla .a 101 to 693 1 to 590       590/590
(100 %)
6 diff
(99.0 %id)
DA653679   .a 101 to 643 2 to 544   capped   543/543
(100 %)
0 diff
(100 %id)
BQ710267 Spleen .a 102 to 1042 1 to 945       945/945
(100 %)
25 diff
(97.4 %id)
BX448208 fetal liver, Liver .a 115 to 812 1 to 698       698/698
(100 %)
35 diff
(95.0 %id)
BU163984 embryonal carcinoma, cell line, testis .a 117 to 998 1 to 887       887/896
(98 %)
18 diff
(98.0 %id)
CT001054 T-Lymphocytes .a 119 to 942 1 to 824       824/825
(99 %)
1 diff
(99.9 %id)
DN991144 brain, whole brain .a 127 to 793 1 to 667       667/667
(100 %)
5 diff
(99.3 %id)
DA208093 brain .a 128 to 690 2 to 564   capped   563/563
(100 %)
1 diff
(99.9 %id)
DA937856 Spleen .a 128 to 706 2 to 580   capped   579/579
(100 %)
0 diff
(100 %id)
BX383722   .a 130 to 813 1 to 686       686/686
(100 %)
6 diff
(99.2 %id)
BP872476 embryonal kidney .a 138 to 717 1 to 581       581/581
(100 %)
2 diff
(99.7 %id)
BP873184 embryonal kidney .a 138 to 720 1 to 583       583/583
(100 %)
0 diff
(100 %id)
DA172299 amygdala .a 161 to 585 2 to 426   capped   425/458
(92 %)
5 diff
(99.0 %id)
TI_44000621   .a 162 to 900 83 to 823       741/858
(86 %)
16 diff
(98.2 %id)
DA565822 heart .a 163 to 720 2 to 559   capped   558/558
(100 %)
0 diff
(100 %id)
DB107217 thymus .a 164 to 727 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
BI544757 brain, hippocampus .a 165 to 900 1 to 739       739/774
(95 %)
15 diff
(98.1 %id)
DB465788 hippocampus .a 170 to 490 1 to 319       319/321
(99 %)
6 diff
(98.2 %id)
AL600975   .a 176 to 833 1 to 663       663/672
(98 %)
13 diff
(98.1 %id)
AL600170   .a 178 to 444 1 to 268       268/268
(100 %)
4 diff
(98.6 %id)
BG756087 B-cells, primary B-cells from tonsils (cell line) .a 179 to 977 1 to 803       803/806
(99 %)
19 diff
(97.7 %id)
AB449904 brain .a 272 to 2704 1 to 2433   tiling clone,   2433/2448
(99 %)
1 diff
(100.0 %id)
BF367717 placenta_normal .a 296 to 677 383 to 2       382/387
(98 %)
0 diff
(100 %id)
BF367718 placenta_normal .a 296 to 677 383 to 2       382/400
(95 %)
0 diff
(100 %id)
BQ369814 placenta_normal .a 296 to 677 383 to 2       382/387
(98 %)
0 diff
(100 %id)
BQ369818 placenta_normal .a 296 to 677 383 to 2       382/400
(95 %)
0 diff
(100 %id)
BF367716 placenta_normal .a 330 to 677 351 to 2       350/351
(99 %)
2 diff
(99.5 %id)
BQ369813 placenta_normal .a 330 to 677 351 to 2       350/351
(99 %)
2 diff
(99.5 %id)
DA302298 hippocampus .a 399 to 993 2 to 596   capped   595/595
(100 %)
0 diff
(100 %id)
BM459196 lymph, lymphoma, cell line .a 449 to 1329 1 to 887       885/1040
(85 %)
8 diff
(99.3 %id)
CN290420 embryonic stem cells, DMSO-treated H9 cellline .a 459 to 1077 1 to 619       619/619
(100 %)
0 diff
(100 %id)
BQ918396 sciatic nerve .a 560 to 1078 1 to 528       528/877
(60 %)
20 diff
(97.8 %id)
BG686182 B-cells, primary B-cells from tonsils (cell line) .a 712 to 1240 1 to 532       532/611
(87 %)
11 diff
(98.2 %id)
BX349117   .a 729 to 1590 1 to 859       859/862
(99 %)
38 diff
(95.6 %id)
DA922058 small intestine .a 736 to 1299 2 to 566   capped   565/565
(100 %)
2 diff
(99.7 %id)
DA483609 brain .a 751 to 1593 2 to 841   capped   840/862
(97 %)
14 diff
(98.4 %id)
BX427367 fetal liver, Liver .a 939 to 1775 14 to 850       837/850
(98 %)
11 diff
(98.8 %id)
DA441221 tongue, tumor tissue .a 942 to 1528 2 to 588   capped   587/587
(100 %)
0 diff
(100 %id)
TI_154188559   .a 1281 to 1982 121 to 821       701/954
(73 %)
6 diff
(99.4 %id)
DN920892   .a 1343 to 1410 1 to 68       68/68
(100 %)
2 diff
(97.1 %id)
AW840635 colon_normal .a 1354 to 1641 1 to 287       287/287
(100 %)
10 diff
(96.6 %id)
BI835349 pooled pancreas and spleen .a 1431 to 2105 1 to 676       676/736
(91 %)
8 diff
(99.0 %id)
TI_57164756   .a 1431 to 2105 33 to 708       676/768
(88 %)
14 diff
(98.2 %id)
BF374054 stomach_normal .a 1519 to 1982 627 to 167       462/641
(72 %)
10 diff
(98.5 %id)
AL449600 testis .a 1525 to 1928 404 to 1       404/404
(100 %)
5 diff
(98.8 %id)
AW867850 stomach_normal .a 1633 to 1982 472 to 123       349/472
(73 %)
3 diff
(99.4 %id)
BU902741 leiomyosarcoma, uterus .a 1902 to 2619 1 to 718       718/894
(80 %)
4 diff
(99.6 %id)
BG184247   .a 1982 to 2441 6 to 464       459/780
(58 %)
8 diff
(99.0 %id)
BQ055839 lymph, lymphoma, cell line .a 2047 to 2619 1 to 574       574/1161
(49 %)
5 diff
(99.6 %id)
BG685491 B-cells, primary B-cells from tonsils (cell line) .a 2086 to 2784 2 to 700       699/704
(99 %)
2 diff
(99.8 %id)
BX406042 fetal liver, Liver .a 2094 to 2653 560 to 1       560/560
(100 %)
4 diff
(99.3 %id)
BF685020 leiomyosarcoma cell line, uterus .a 2219 to 2619 1 to 403       403/939
(42 %)
6 diff
(99.4 %id)
BF662956 B-cells, primary B-cells from tonsils (cell line) .a 2282 to 2996 1 to 715   available from MGC,   715/727
(98 %)
21 diff
(97.2 %id)
BG756260 B-cells, primary B-cells from tonsils (cell line) .a 2282 to 2990 1 to 715   AAA   715/733
(97 %)
16 diff
(97.9 %id)
BI768298 pooled lung and spleen .a 2293 to 3000 1 to 708   AAA   708/708
(100 %)
0 diff
(100 %id)
TI_57180532   .a 2295 to 3000 37 to 742   AAA   706/742
(95 %)
6 diff
(99.2 %id)
BC018630 Primary B-Cells from Tonsils .a 2296 to 2995 1 to 700   available from MGC, AAA   700/700
(100 %)
0 diff
(100 %id)
EB361672 eye, lens .a 2335 to 2917 583 to 1       583/583
(100 %)
0 diff
(100 %id)
DB318338   .a 2431 to 2995 566 to 1       566/566
(100 %)
1 diff
(99.9 %id)
BG181286   .a 2481 to 3001 43 to 563       521/566
(92 %)
8 diff
(98.6 %id)
BG211754   .a 2481 to 2996 43 to 558       516/560
(92 %)
11 diff
(98.1 %id)
BG107127 lymph, lymphoma, cell line .a 2481 to 3000 76 to 595   AAA   520/595
(87 %)
10 diff
(98.4 %id)
BG107203 lymph, lymphoma, cell line .a 2481 to 3000 74 to 600       527/872
(60 %)
16 diff
(98.2 %id)
BG685959 B-cells, primary B-cells from tonsils (cell line) .a 2481 to 3002 44 to 566   AAA   523/566
(92 %)
7 diff
(98.8 %id)
BQ016623 lung, Metastatic Chondrosarcoma .a 2481 to 3000 538 to 19   AAA   520/626
(83 %)
1 diff
(99.9 %id)
AI687550 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 2483 to 2806 324 to 1       324/324
(100 %)
12 diff
(96.3 %id)
AW117687 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .a 2483 to 2990 510 to 3       508/519
(97 %)
0 diff
(100 %id)
CB051950 leiomyosarcoma, soft tissue .a 2486 to 3000 545 to 30   AAA   516/516
(100 %)
1 diff
(99.9 %id)
AI446643 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 2488 to 2999 517 to 7       511/517
(98 %)
3 diff
(99.5 %id)
BP424974 small intestine .a 2497 to 3004 1 to 508   tiling clone, Submitted on the opposite strand 508/509
(99 %)
1 diff
(99.9 %id)
AI204241 lung .a 2498 to 3001 508 to 5       504/508
(99 %)
0 diff
(100 %id)
CA418744 Chondrosarcoma Grade II, Left Pelvis .a 2543 to 2995 471 to 19   AAA   453/453
(100 %)
1 diff
(99.8 %id)
CR738548 poorly differentiated adenocarcinoma withsignet ring cell features, stomach .a 2544 to 2998 469 to 15   AAA   455/455
(100 %)
0 diff
(100 %id)
AA229333   .a 2552 to 2948 6 to 404       399/407
(98 %)
4 diff
(99.1 %id)
DB532632 hippocampus .a 2567 to 2995 1 to 429     Submitted on the opposite strand 429/429
(100 %)
6 diff
(98.7 %id)
BG193682   .a 2606 to 3003 1 to 398   AAA   398/398
(100 %)
17 diff
(95.8 %id)
BG218648   .a 2606 to 3004 35 to 430       396/431
(91 %)
12 diff
(97.3 %id)
AW613572 Kidney .a 2606 to 2999 397 to 4       394/416
(94 %)
3 diff
(99.3 %id)
BG193683   .a 2610 to 3000 11 to 410   AAA   400/410
(97 %)
7 diff
(98.3 %id)
BG200921   .a 2611 to 3000 1 to 391   AAA   391/391
(100 %)
2 diff
(99.5 %id)
CK825481 Pancreas, Purified pancreatic islet .a 2611 to 2974 364 to 1     Submitted on the opposite strand 364/570
(63 %)
2 diff
(99.7 %id)
FN075368 breast carcinoma .a 2612 to 2702 91 to 1     Submitted on the opposite strand 91/99
(91 %)
1 diff
(99.0 %id)
N31984 placenta .a 2612 to 3001 401 to 7       395/466
(84 %)
7 diff
(98.5 %id)
AI190891   .a 2612 to 3000 404 to 16   AAA   389/638
(60 %)
0 diff
(100 %id)
AI687535 poorly-differentiated endometrialadenocarcinoma, 2 pooled tumors, uterus .a 2612 to 2806 195 to 1       195/335
(58 %)
1 diff
(99.8 %id)
TI_154055849   .a 2612 to 2995 467 to 84   AAA   384/904
(42 %)
1 diff
(99.9 %id)
BG341464 B-cells, primary B-cells from tonsils (cell line) .a 2615 to 2989 1 to 380   AAA   380/380
(100 %)
6 diff
(98.5 %id)
BG197721   .a 2618 to 2989 10 to 380   AAA   371/380
(97 %)
10 diff
(97.4 %id)
BG193157   .a 2633 to 3001 33 to 401       369/408
(90 %)
11 diff
(97.4 %id)
BG211755   .a 2665 to 3000 74 to 409   AAA   336/409
(82 %)
6 diff
(98.6 %id)
AA810823 germinal center B cell .a 2675 to 2997 342 to 20   AAA   323/323
(100 %)
0 diff
(100 %id)
R15659   .a 2678 to 2867 189 to 1       189/193
(97 %)
2 diff
(99.0 %id)
FN047238 breast carcinoma .a 2707 to 2799 1 to 92       92/92
(100 %)
1 diff
(99.0 %id)
N63623 multiple sclerosis lesions .a 2772 to 2995 222 to 1       222/223
(99 %)
5 diff
(97.8 %id)
FN130449 breast carcinoma .a 2775 to 2888 1 to 109       109/109
(100 %)
9 diff
(91.8 %id)
GD148241   .a 2854 to 3000 1 to 147   AAA   147/147
(100 %)
7 diff
(95.3 %id)
GD148249   .a 2854 to 3001 1 to 148       148/160
(92 %)
6 diff
(96.3 %id)
FN124242 breast carcinoma .a 2883 to 2994 1 to 112       112/112
(100 %)
0 diff
(100 %id)
AL157958   .b 1 to 1847 1 to 1847 exact tiling clone,   1847/1847
(100 %)
0 diff
(100 %id)
BC041888 testis .c 1 to 2604 1 to 2604 exact tiling clone, available from MGC, AAA   2604/2604
(100 %)
2 diff
(100.0 %id)
DB087378 testis .c 6 to 567 2 to 563   capped   562/562
(100 %)
0 diff
(100 %id)
DA392217 thalamus .c 112 to 668 2 to 558   capped   557/557
(100 %)
0 diff
(100 %id)
DB264630 uterus .c 112 to 710 2 to 600   capped   599/599
(100 %)
1 diff
(99.9 %id)
BG482393 choriocarcinoma, placenta .c 131 to 569 1 to 439       439/439
(100 %)
0 diff
(100 %id)
BG481250 choriocarcinoma, placenta .c 131 to 958 1 to 830       830/946
(87 %)
10 diff
(99.0 %id)
DA824003 pericardium .c 173 to 730 2 to 559   tiling clone, capped   558/558
(100 %)
1 diff
(99.9 %id)
TI_1948157028   .c 278 to 1202 130 to 1050   fully sequenced,   921/1050
(87 %)
15 diff
(98.6 %id)
TI_1948157340   .c 278 to 1109 130 to 953   fully sequenced,   824/953
(86 %)
11 diff
(98.9 %id)
TI_1948207505   .c 278 to 1187 131 to 1037   fully sequenced,   907/1037
(87 %)
18 diff
(98.3 %id)
EL733919 mixed .c 282 to 918 1 to 637       637/637
(100 %)
1 diff
(99.9 %id)
TI_1948157341   .c 1079 to 2098 1152 to 127   fully sequenced,   1026/1152
(89 %)
19 diff
(98.4 %id)
TI_1948207506   .c 1148 to 2098 1079 to 130   fully sequenced,   950/1079
(88 %)
20 diff
(98.2 %id)
TI_1948157029   .c 1172 to 2098 1053 to 128   fully sequenced,   926/1053
(87 %)
5 diff
(99.6 %id)
BF946931 nervous_normal .c 2051 to 2194 143 to 1       143/143
(100 %)
7 diff
(95.2 %id)
AB019491 testis .d 1 to 1744 1 to 1749 exact tiling clone,   1749/1749
(100 %)
9 diff
(99.5 %id)
DB088774 testis .e 1 to 545 2 to 546   tiling clone, capped   545/545
(100 %)
0 diff
(100 %id)
DB083161 testis .e 13 to 565 2 to 554   capped   553/553
(100 %)
1 diff
(99.9 %id)
DB100182 testis .e 26 to 235 2 to 211   capped   210/210
(100 %)
0 diff
(100 %id)
AB019489 testis .e 41 to 1883 537 to 2389 exact tiling clone,   1853/2399
(77 %)
17 diff
(99.3 %id)
DB073361 testis .e 159 to 689 2 to 532   capped   531/531
(100 %)
0 diff
(100 %id)
AB019492 testis .e 177 to 1920 1 to 1745   tiling clone,   1745/1745
(100 %)
2 diff
(99.9 %id)
AW188014 pooled .e 983 to 1696 710 to 1       710/710
(100 %)
13 diff
(98.2 %id)
CN307989 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .e 1049 to 1812 1 to 765       765/765
(100 %)
1 diff
(99.9 %id)
BI601793 brain, hypothalamus .e 1121 to 1773 7 to 681       636/681
(93 %)
28 diff
(95.9 %id)
TI_45211352   .e 1121 to 1773 87 to 761       636/761
(83 %)
28 diff
(96.4 %id)
AI083540 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .e 1170 to 1694 525 to 1       525/525
(100 %)
1 diff
(99.9 %id)
AW977461   .e 1192 to 1694 504 to 1     Submitted on the opposite strand 504/504
(100 %)
22 diff
(95.7 %id)
AW977464   .e 1210 to 1694 485 to 1     Submitted on the opposite strand 485/485
(100 %)
7 diff
(98.6 %id)
AA721475 germinal center B cell .e 1322 to 1704 383 to 1       383/383
(100 %)
0 diff
(100 %id)
DA265016 caudate nucleus .e 1348 to 1907 2 to 561   tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
AA906058 pooled .e 1351 to 1695 345 to 1       345/345
(100 %)
0 diff
(100 %id)
AA767772 germinal center B cell .e 1409 to 1664 256 to 1       256/256
(100 %)
7 diff
(97.3 %id)
AI015734   .e 1581 to 1785 1 to 204     Submitted on the opposite strand 204/204
(100 %)
2 diff
(99.1 %id)
AB007940 brain .f 59 to 6855 35 to 6834 exact tiling clone, available from KIAA,   6834/6834
(100 %)
5 diff
(100.0 %id)
BI560674 testis .g 1 to 697 7 to 703       703/703
(100 %)
5 diff
(99.3 %id)
TI_44349664   .g 1 to 697 139 to 835       698/835
(83 %)
6 diff
(99.3 %id)
DB063702 testis .g 1 to 530 2 to 531   tiling clone, capped   530/541
(97 %)
0 diff
(100 %id)
AB019493 testis .g 13 to 1873 1 to 1861 exact tiling clone, AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 1861/1861
(100 %)
0 diff
(100 %id)
AV749445 Pituitary .g 786 to 1082 1 to 290       290/297
(97 %)
11 diff
(96.3 %id)
AL708119 human skeletal muscle .g 1033 to 1662 1 to 630       630/630
(100 %)
5 diff
(99.3 %id)
BI599798 brain, hypothalamus .g 1097 to 1751 1 to 663       663/665
(99 %)
42 diff
(93.7 %id)
TI_45210802   .g 1102 to 1751 80 to 737       658/739
(89 %)
42 diff
(94.4 %id)
DB232940 trachea .h 1 to 594 2 to 596   tiling clone, capped   595/595
(100 %)
1 diff
(99.9 %id)
CR627374 amygdala .h 244 to 6525 1 to 6282 K44R tiling clone, available from DKFZ, AAA   6282/6282
(100 %)
7 diff
(99.9 %id)
DA828359 placenta .h 1368 to 2043 2 to 680   capped   679/723
(93 %)
11 diff
(98.5 %id)
DA111925 cerebellum .h 1546 to 2140 2 to 597   capped   596/596
(100 %)
1 diff
(99.9 %id)
BX476481   .h 1561 to 2051 1 to 491       491/491
(100 %)
0 diff
(100 %id)
FN049543 breast carcinoma .h 1564 to 1623 61 to 1     Submitted on the opposite strand 61/62
(98 %)
1 diff
(98.4 %id)
AA313834 colon .h 1931 to 2449 1 to 519       519/519
(100 %)
1 diff
(99.9 %id)
AW961202   .h 1932 to 2356 1 to 426       426/426
(100 %)
33 diff
(92.3 %id)
BX476060   .h 1953 to 2642 1 to 690       690/690
(100 %)
8 diff
(98.9 %id)
M62010   .h 2018 to 2331 1 to 316       316/316
(100 %)
5 diff
(98.5 %id)
BX481835   .h 2141 to 2847 8 to 714   tiling clone,   707/714
(99 %)
7 diff
(99.1 %id)
AA251465 germinal center B cell .h 2313 to 2721 1 to 409       409/409
(100 %)
1 diff
(99.8 %id)
DB239665 trachea .h 2316 to 2905 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
BX501610 Liver .h 2320 to 2765 1 to 444       444/444
(100 %)
7 diff
(98.5 %id)
DB218235 trachea .h 2498 to 3053 2 to 554   capped   553/553
(100 %)
2 diff
(99.7 %id)
AI142583 pooled .h 2505 to 2886 403 to 22   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 382/382
(100 %)
0 diff
(100 %id)
BU608842 Human Lung Epithelial cells, lung .h 2510 to 3238 742 to 17   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 726/726
(100 %)
6 diff
(99.2 %id)
AI932655 adenocarcinoma, Pancreas .h 2585 to 2889 319 to 14   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 306/306
(100 %)
2 diff
(99.4 %id)
DB372862 placenta .h 2634 to 3186 547 to 1       547/548
(99 %)
16 diff
(97.1 %id)
BF509304   .h 2695 to 3180 498 to 18   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 481/481
(100 %)
11 diff
(97.8 %id)
DB520065 testis .h 2733 to 3186 1 to 449     Submitted on the opposite strand 449/450
(99 %)
7 diff
(98.5 %id)
DA213293 brain .h 2743 to 3296 2 to 555   tiling clone, capped   554/554
(100 %)
0 diff
(100 %id)
DA219921 brain .h 2751 to 3308 2 to 559   capped   558/558
(100 %)
1 diff
(99.9 %id)
DA754844   .h 2818 to 3357 2 to 540   capped   539/539
(100 %)
2 diff
(99.7 %id)
DA222185 brain .h 2860 to 3412 2 to 555   capped   554/554
(100 %)
1 diff
(99.9 %id)
DA410858 thalamus .h 2878 to 3422 2 to 546   capped   545/545
(100 %)
2 diff
(99.7 %id)
DB150771 thymus .h 2916 to 3470 2 to 554   capped   553/553
(100 %)
3 diff
(99.5 %id)
CN307986 embryonic stem cells, cell lines H1, H7, andH9 .h 2949 to 3449 1 to 502       502/502
(100 %)
1 diff
(99.9 %id)
BF816571 colon_ins .h 2960 to 3347 387 to 1     Submitted on the opposite strand 387/392
(98 %)
9 diff
(97.8 %id)
BX951034   .h 2973 to 3557 1 to 580       580/580
(100 %)
2 diff
(99.7 %id)
CN307987 embryonic stem cells, cell lines H1, H7, andH9 .h 2999 to 3692 31 to 724       694/724
(95 %)
6 diff
(99.2 %id)
AL119811 amygdala .h 3006 to 3245 27 to 266       240/266
(90 %)
6 diff
(97.8 %id)
DA109552 cerebellum .h 3069 to 3658 2 to 591   capped   590/590
(100 %)
0 diff
(100 %id)
DA214559 brain .h 3069 to 3627 2 to 560   capped   559/559
(100 %)
0 diff
(100 %id)
DA408595 thalamus .h 3157 to 3716 2 to 561   capped   560/560
(100 %)
1 diff
(99.9 %id)
DA798263 brain .h 3168 to 3725 2 to 560   capped   559/559
(100 %)
1 diff
(99.9 %id)
DB470629.
matches multiple genes
hippocampus .h 3169 to 3633 1 to 464     also hits gene werrabo 464/464
(100 %)
1 diff
(99.8 %id)
DB225135 trachea .h 3169 to 3746 2 to 580   capped   579/579
(100 %)
1 diff
(99.9 %id)
DA182737 amygdala .h 3188 to 3751 2 to 565   capped   564/564
(100 %)
0 diff
(100 %id)
DA119168 cerebellum .h 3262 to 3787 2 to 527   tiling clone, capped   526/526
(100 %)
0 diff
(100 %id)
DA233415 brain .h 3268 to 3850 2 to 584   capped   583/583
(100 %)
1 diff
(99.9 %id)
DA233433 brain .h 3268 to 3848 2 to 582   capped   581/581
(100 %)
1 diff
(99.9 %id)
BE242618 leukopheresis .h 3335 to 3734 1 to 400       400/400
(100 %)
5 diff
(98.8 %id)
DA155918 amygdala .h 3368 to 3934 2 to 568   capped   567/567
(100 %)
2 diff
(99.7 %id)
BX955543   .h 3387 to 3768 1 to 382       382/382
(100 %)
0 diff
(100 %id)
DA410834 thalamus .h 3398 to 4064 2 to 668   capped   667/667
(100 %)
1 diff
(99.9 %id)
EB386817 eye, optic nerve .h 3429 to 4277 1 to 848       848/848
(100 %)
5 diff
(99.5 %id)
BX496493 Liver .h 3457 to 3973 1 to 519       519/519
(100 %)
3 diff
(99.5 %id)
CR744992 placenta .h 3567 to 4233 89 to 755   tiling clone,   667/755
(88 %)
6 diff
(99.3 %id)
DB172708 kidney, tumor tissue .h 3674 to 4261 2 to 589   capped   588/588
(100 %)
2 diff
(99.7 %id)
DA712826   .h 3705 to 4230 2 to 528   capped   527/527
(100 %)
3 diff
(99.5 %id)
DA027977   .h 3735 to 4230 2 to 497   capped   496/496
(100 %)
1 diff
(99.8 %id)
AA810191 germinal center B cell .h 3769 to 4236 1 to 468     Submitted on the opposite strand 468/468
(100 %)
1 diff
(99.8 %id)
AA890290 parathyroid gland, parathyroid tumor .h 3780 to 4211 1 to 432     Submitted on the opposite strand 432/432
(100 %)
2 diff
(99.6 %id)
AI217346 pooled .h 3791 to 4262 472 to 1       472/472
(100 %)
1 diff
(99.8 %id)
BX956286   .h 3794 to 4465 1 to 672       672/672
(100 %)
3 diff
(99.6 %id)
AI469950 pooled .h 3815 to 4241 454 to 28   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 427/427
(100 %)
7 diff
(98.4 %id)
BG291224 bladder, transitional cell papilloma, cell line .h 3854 to 4597 1 to 736       736/738
(99 %)
19 diff
(97.5 %id)
DR422353 eye, Pterygium .h 3899 to 4465 1 to 567       567/567
(100 %)
2 diff
(99.7 %id)
DA483686 brain .h 3942 to 4441 2 to 502   capped   501/501
(100 %)
4 diff
(99.3 %id)
AA324371 brain, cerebellum .h 3978 to 4246 1 to 272       272/272
(100 %)
5 diff
(98.2 %id)
AI674726 pooled .h 4033 to 4521 1 to 489     Submitted on the opposite strand 489/489
(100 %)
3 diff
(99.4 %id)
AI827931 pooled .h 4033 to 4586 1 to 554     Submitted on the opposite strand 554/554
(100 %)
2 diff
(99.7 %id)
R21218 placenta .h 4101 to 4241 161 to 21   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 141/143
(98 %)
5 diff
(96.6 %id)
AW518918 adenocarcinoma, Pancreas .h 4150 to 4662 513 to 1   tiling clone,   513/513
(100 %)
1 diff
(99.9 %id)
AA322448 brain, cerebellum .h 4161 to 4401 1 to 241       241/241
(100 %)
0 diff
(100 %id)
DB174212 kidney, tumor tissue .h 4191 to 4762 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
H86176 eye, retina .h 4220 to 4623 12 to 416       405/416
(97 %)
6 diff
(98.6 %id)
H38940 eye, retina .h 4247 to 4602 1 to 357       357/357
(100 %)
2 diff
(99.5 %id)
BI600915 brain, hypothalamus .h 4329 to 5206 1 to 892       892/1064
(83 %)
46 diff
(95.7 %id)
TI_45214195   .h 4329 to 5206 85 to 976       892/1148
(77 %)
46 diff
(96.0 %id)
CN307988 embryonic stem cell, retinoic acid andmitogen-treated hES cell line H7 .h 4334 to 4608 1 to 275       275/275
(100 %)
5 diff
(98.2 %id)
DB491865.
matches multiple genes
hypothalamus .h 4334 to 4747 1 to 415     also hits gene werrabo 415/415
(100 %)
3 diff
(99.3 %id)
DB495065.
matches multiple genes
hypothalamus .h 4334 to 4816 1 to 483     also hits gene werrabo 483/483
(100 %)
2 diff
(99.6 %id)
BF362857 nervous_normal .h 4389 to 4793 413 to 8       406/413
(98 %)
0 diff
(100 %id)
BP227739   .h 4414 to 4985 1 to 570       570/570
(100 %)
3 diff
(99.5 %id)
BF353073 head_neck .h 4420 to 4781 1 to 363       363/363
(100 %)
3 diff
(99.2 %id)
DA672259   .h 4434 to 5021 2 to 589   capped   588/588
(100 %)
0 diff
(100 %id)
AW820422 stomach .h 4439 to 4672 237 to 6       232/237
(97 %)
0 diff
(100 %id)
AW820432 stomach .h 4439 to 4652 215 to 2       214/215
(99 %)
0 diff
(100 %id)
AW838498 leiomios .h 4439 to 4672 258 to 26       233/258
(90 %)
0 diff
(100 %id)
BE174749 head_neck .h 4439 to 4672 251 to 20     Submitted on the opposite strand 232/251
(92 %)
0 diff
(100 %id)
BF352021 head_neck .h 4439 to 4672 253 to 22       232/253
(91 %)
0 diff
(100 %id)
DA343728 substantia nigra .h 4452 to 5001 2 to 551   capped   550/550
(100 %)
0 diff
(100 %id)
Z43971 brain, total brain .h 4466 to 4789 1 to 324       324/324
(100 %)
3 diff
(99.1 %id)
DB005296 breast, tumor tissue .h 4494 to 5043 2 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DA263772 caudate nucleus .h 4537 to 5103 2 to 568   capped   567/567
(100 %)
0 diff
(100 %id)
BP221022 colon .h 4627 to 5199 1 to 573       573/573
(100 %)
4 diff
(99.4 %id)
BJ990335 hepatoblastoma .h 4648 to 5227 1 to 580       580/580
(100 %)
0 diff
(100 %id)
AA235916.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h 4712 to 4940 1 to 229     also hits gene ZRANB2 229/229
(100 %)
1 diff
(99.6 %id)
BG260700 bladder, transitional cell papilloma, cell line .h 4838 to 5510 1 to 669       669/972
(68 %)
13 diff
(98.7 %id)
CK904853 Islets of Langerhans, Pancreas .h 4957 to 5550 1 to 594       594/594
(100 %)
0 diff
(100 %id)
BM055202 Islets of Langerhans, Pancreas .h 4973 to 5520 1 to 548       548/548
(100 %)
0 diff
(100 %id)
BF355658 head_neck .h 4990 to 5154 1 to 165       165/165
(100 %)
4 diff
(97.6 %id)
AA333696   .h 5008 to 5264 1 to 257       257/257
(100 %)
0 diff
(100 %id)
AV749612 Pituitary .h 5034 to 5536 1 to 504       504/537
(93 %)
14 diff
(97.4 %id)
C04923 heart .h 5052 to 5435 1 to 381       381/384
(99 %)
5 diff
(98.7 %id)
AV749812 Pituitary .h 5082 to 5422 1 to 339       339/351
(96 %)
2 diff
(99.5 %id)
BE000759 breast_normal .h 5094 to 5477 62 to 442       381/442
(86 %)
6 diff
(98.7 %id)
BE000903 breast_normal .h 5094 to 5477 53 to 436       384/436
(88 %)
6 diff
(98.7 %id)
R53372 whole brain .h 5116 to 5487 1 to 382       382/460
(83 %)
17 diff
(96.4 %id)
AA382856 testis .h 5128 to 5298 1 to 171       171/177
(96 %)
1 diff
(99.5 %id)
BG570215 lung .h 5150 to 5822 1 to 680       680/792
(85 %)
10 diff
(98.8 %id)
BG259812 bladder, transitional cell papilloma, cell line .h 5178 to 5945 1 to 764       764/911
(83 %)
24 diff
(97.4 %id)
CB053827 leiomyosarcoma, soft tissue .h 5246 to 5585 10 to 350     Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 341/350
(97 %)
6 diff
(98.3 %id)
DB463591.
matches multiple genes
hippocampus .h 5272 to 5709 1 to 439     also hits gene werrabo 439/439
(100 %)
5 diff
(98.9 %id)
BM769860 stomach .h 5325 to 5985 1 to 660       660/660
(100 %)
1 diff
(99.9 %id)
R66848 placenta .h 5361 to 5764 1 to 410       410/410
(100 %)
20 diff
(95.2 %id)
BI086223 cervix .h 5390 to 6285 1 to 895       895/895
(100 %)
29 diff
(96.8 %id)
AA625086 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h 5432 to 5916 1 to 486       486/486
(100 %)
6 diff
(98.8 %id)
AA352481   .h 5451 to 5771 11 to 331       321/331
(96 %)
9 diff
(97.3 %id)
AA236978.
matches multiple genes
mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h 5455 to 5693 239 to 1     also hits gene DFNB59 239/239
(100 %)
0 diff
(100 %id)
AA368029 placenta .h 5484 to 5874 1 to 400       400/407
(98 %)
16 diff
(96.1 %id)
EB388655 eye, optic nerve .h 5488 to 6058 1 to 571       571/571
(100 %)
4 diff
(99.3 %id)
D60888   .h 5495 to 5833 1 to 339       339/339
(100 %)
0 diff
(100 %id)
BQ219562 brain .h 5501 to 6350 19 to 876       858/934
(91 %)
25 diff
(97.4 %id)
BQ228249 brain .h 5502 to 6386 1 to 885       885/885
(100 %)
5 diff
(99.5 %id)
BE568612 bladder, carcinoma, cell line .h 5546 to 6091 1 to 540       540/855
(63 %)
20 diff
(97.7 %id)
BE566660 bladder, carcinoma, cell line .h 5555 to 6133 1 to 578       578/579
(99 %)
11 diff
(98.2 %id)
BF373626 prostate_tumor .h 5558 to 5830 1 to 273       273/273
(100 %)
8 diff
(97.1 %id)
R34497 placenta .h 5607 to 5898 1 to 300       300/305
(98 %)
16 diff
(94.8 %id)
BE958322 brain, primitive neuroectoderm .h 5632 to 6310 1 to 662       662/869
(76 %)
26 diff
(97.1 %id)
H04089 placenta .h 5684 to 6068 1 to 391       391/406
(96 %)
9 diff
(97.8 %id)
TI_149305291   .h 5709 to 6525 909 to 95   AAA   815/995
(81 %)
12 diff
(98.8 %id)
R78292 placenta .h 5711 to 6119 1 to 413   fully sequenced,   413/413
(100 %)
9 diff
(97.9 %id)
H04487 placenta .h 5766 to 6258 1 to 494       494/659
(74 %)
4 diff
(99.4 %id)
BX099971 brain .h 5769 to 6388 1 to 613       613/613
(100 %)
4 diff
(99.4 %id)
H19094 brain .h 5769 to 6233 1 to 473   fully sequenced,   473/473
(100 %)
12 diff
(97.5 %id)
BQ005048 Chondrosarcoma, Left Pelvis .h 5784 to 6434 669 to 18   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 652/652
(100 %)
1 diff
(99.9 %id)
BF367991 placenta_normal .h 5790 to 6314 1 to 525       525/525
(100 %)
4 diff
(99.3 %id)
BU685662 lung, Primary Lung Epithelial Cells .h 5801 to 6525 743 to 19   AAA   725/725
(100 %)
4 diff
(99.5 %id)
CK904852 Islets of Langerhans, Pancreas .h 5843 to 6439 597 to 1       597/597
(100 %)
1 diff
(99.9 %id)
TI_149308454   .h 5846 to 6531 765 to 80   AAA   686/952
(72 %)
1 diff
(99.9 %id)
BM979660 lung, Primary Lung Epithelial Cells .h 5846 to 6531 704 to 19   AAA   686/699
(98 %)
1 diff
(99.9 %id)
BM054951 Islets of Langerhans, Pancreas .h 5936 to 6439 504 to 1       504/504
(100 %)
1 diff
(99.9 %id)
CN307990 embryonic stem cells, cell lines H1, H7, andH9 .h 5999 to 6407 23 to 431       409/431
(94 %)
11 diff
(97.5 %id)
BM992580 lung, Metastatic Chondrosarcoma .h 6002 to 6531 549 to 19   AAA   531/531
(100 %)
1 diff
(99.9 %id)
FN101341 breast carcinoma .h 6035 to 6144 1 to 108       108/108
(100 %)
2 diff
(98.2 %id)
BJ990336 hepatoblastoma .h 6041 to 6507 467 to 1       467/467
(100 %)
0 diff
(100 %id)
R78293 placenta .h 6051 to 6411 368 to 1   fully sequenced,   368/368
(100 %)
6 diff
(98.4 %id)
AI350943 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h 6052 to 6427 377 to 1       377/377
(100 %)
2 diff
(99.5 %id)
AI923512 uterus, well-differentiated endometrialadenocarcinoma, 7 pooled tumors .h 6056 to 6532 480 to 4   tiling clone,   477/480
(99 %)
0 diff
(100 %id)
AI127773 uterus .h 6058 to 6525 478 to 11   AAA   468/468
(100 %)
1 diff
(99.8 %id)
AI041577 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h 6060 to 6525 466 to 1       466/466
(100 %)
1 diff
(99.8 %id)
AA894740 Kidney .h 6067 to 6532 462 to 3       460/462
(99 %)
0 diff
(100 %id)
AI313165 lung .h 6072 to 6532 469 to 9       461/469
(98 %)
0 diff
(100 %id)
AA678467   .h 6074 to 6458 385 to 1       385/385
(100 %)
0 diff
(100 %id)
AW611849 Kidney .h 6094 to 6526 427 to 1       427/427
(100 %)
4 diff
(99.1 %id)
AA864734 germinal center B cell .h 6098 to 6532 443 to 9       435/443
(98 %)
0 diff
(100 %id)
AI089183 pooled .h 6098 to 6532 432 to 4       429/432
(99 %)
0 diff
(100 %id)
AA761744 germinal center B cell .h 6099 to 6532 442 to 9       434/442
(98 %)
0 diff
(100 %id)
AW612214 carcinoid, lung .h 6103 to 6525 447 to 25   AAA   423/423
(100 %)
0 diff
(100 %id)
AA515578 colon .h 6114 to 6527 414 to 1       414/414
(100 %)
1 diff
(99.8 %id)
AI251829 brain, tumor, 5 pooled (see description) .h 6114 to 6527 421 to 8       414/421
(98 %)
0 diff
(100 %id)
AI375266 mixed (see below), Pooled human melanocyte, fetal heart, andpregnant uterus .h 6126 to 6527 404 to 3       402/404
(99 %)
0 diff
(100 %id)
AW262950 adenocarcinoma, Pancreas .h 6126 to 6525 411 to 18   AAA   394/394
(100 %)
6 diff
(98.5 %id)
AI245557 Kidney .h 6135 to 6532 399 to 2       398/399
(99 %)
0 diff
(100 %id)
T15815   .h 6137 to 6531 405 to 1       405/419
(96 %)
19 diff
(95.5 %id)
AA416769   .h 6138 to 6530 401 to 14   AAA   388/388
(100 %)
3 diff
(99.3 %id)
D56433   .h 6141 to 6476 1 to 335       335/335
(100 %)
4 diff
(98.9 %id)
R37274 whole brain .h 6141 to 6525 406 to 14   AAA   393/394
(99 %)
12 diff
(97.0 %id)
R53974 whole brain .h 6143 to 6525 400 to 18   AAA   383/386
(99 %)
1 diff
(99.8 %id)
BQ026513 placenta .h 6143 to 6525 393 to 18   AAA   376/376
(100 %)
4 diff
(99.0 %id)
AA634062   .h 6152 to 6532 382 to 2       381/382
(99 %)
0 diff
(100 %id)
AI520799 adenocarcinoma, Pancreas .h 6152 to 6527 376 to 1       376/376
(100 %)
4 diff
(99.0 %id)
AA953010 pooled .h 6168 to 6525 358 to 1       358/358
(100 %)
0 diff
(100 %id)
AA826485 carcinoid, lung .h 6202 to 6525 348 to 25   AAA   324/324
(100 %)
5 diff
(98.5 %id)
AW021136 cochlea, ear .h 6206 to 6525 8 to 327   AAA   320/327
(97 %)
6 diff
(98.2 %id)
BQ490693 esophagus, squamous cell carcinoma .h 6207 to 6525 1 to 318   AAA   318/318
(100 %)
4 diff
(98.8 %id)
BQ490694 esophagus, squamous cell carcinoma .h 6207 to 6531 1 to 324   AAA   324/324
(100 %)
4 diff
(98.8 %id)
R62942 placenta .h 6207 to 6532 326 to 1       326/365
(89 %)
8 diff
(97.9 %id)
H18994 brain .h 6207 to 6526 318 to 1   fully sequenced,   318/318
(100 %)
7 diff
(97.8 %id)
D62647   .h 6208 to 6457 1 to 252       252/252
(100 %)
5 diff
(98.1 %id)
R67943 placenta .h 6213 to 6532 319 to 1       319/320
(99 %)
10 diff
(96.9 %id)
CB053826 leiomyosarcoma, soft tissue .h 6224 to 6434 241 to 31   AAA Possibly primed on the genome, locally A rich (10/10 A in genome downstream of last aligned base) 211/211
(100 %)
1 diff
(99.6 %id)
H03391 placenta .h 6238 to 6531 296 to 1       296/296
(100 %)
3 diff
(99.0 %id)
AI565394 Kidney .h 6244 to 6531 292 to 11   AAA   282/282
(100 %)
4 diff
(98.6 %id)
BG108817 retina, Retinal Pigment Epithelium sheets .h 6259 to 6530 1 to 265       265/274
(96 %)
6 diff
(97.9 %id)
AI360496 lymph node, lymphoma, follicular mixed small and largecell .h 6272 to 6531 292 to 33   AAA   260/263
(98 %)
3 diff
(98.9 %id)
R34377 placenta .h 6283 to 6521 243 to 1       243/324
(75 %)
8 diff
(97.6 %id)
H38995 eye, retina .h 6302 to 6512 212 to 1       212/212
(100 %)
7 diff
(96.7 %id)
T17113   .h 6321 to 6529 213 to 4       210/213
(98 %)
0 diff
(100 %id)
H86112 eye, retina .h 6328 to 6505 178 to 1       178/178
(100 %)
3 diff
(98.4 %id)
H01931 placenta .h 6353 to 6530 178 to 1       178/178
(100 %)
0 diff
(100 %id)
H38941 eye, retina .h 6353 to 6515 163 to 1       163/163
(100 %)
0 diff
(100 %id)
CD643253 Embryonic Stem cells .i 1 to 705 51 to 755   tiling clone,   705/759
(92 %)
20 diff
(97.4 %id)
CN307985 embryonic stem cells, cell lines H1, H7, andH9 .i 35 to 695 1 to 661   tiling clone,   661/661
(100 %)
0 diff
(100 %id)
DA304582 hippocampus .i 73 to 650 2 to 580   capped   579/579
(100 %)
2 diff
(99.7 %id)
DC429133   .i 605 to 1199 1 to 595   tiling clone,   595/595
(100 %)
0 diff
(100 %id)
DA287247 corpus callosum .j 1 to 560 2 to 561   tiling clone, capped   560/560
(100 %)
0 diff
(100 %id)
BG183452   .j 318 to 1159 1 to 839   tiling clone,   839/839
(100 %)
26 diff
(97.0 %id)
DB137620 thymus .k 1 to 546 2 to 547   tiling clone, capped   546/546
(100 %)
3 diff
(99.5 %id)
BP873102 embryonal kidney .k 80 to 660 1 to 581   tiling clone,   581/581
(100 %)
0 diff
(100 %id)
AF279778 teratocarcinoma .k 416 to 2371 1 to 1956   tiling clone,   1956/1956
(100 %)
3 diff
(99.9 %id)
AK074409   .k 514 to 2380 1 to 1869   available from FLJ, AAA   1869/1869
(100 %)
12 diff
(99.4 %id)
BU602917 mixed (pool of 40 RNAs) .k 1063 to 1900 1 to 842       842/843
(99 %)
20 diff
(97.7 %id)
U61109   .k 1313 to 1636 10 to 332       323/332
(97 %)
6 diff
(98.2 %id)
BG397461 B-cells, primary B-cells from tonsils (cell line) .k 1585 to 2381 1 to 797   tiling clone, AAA   797/797
(100 %)
10 diff
(98.8 %id)
U61108   .k 1700 to 1996 299 to 1     Submitted on the opposite strand 299/301
(99 %)
3 diff
(99.1 %id)
CA306588 Alveolar Macrophage, lung .k 1701 to 2380 700 to 19   tiling clone, AAA   682/682
(100 %)
3 diff
(99.6 %id)
CD368245 Alveolar Macrophage, lung .k 1715 to 2374 677 to 17   AAA   661/661
(100 %)
4 diff
(99.4 %id)
BQ367523 placenta_normal .k 1833 to 2380 547 to 1       547/549
(99 %)
40 diff
(92.8 %id)
AB019490 testis .l 1 to 2103 1 to 2103 exact tiling clone,   2103/2103
(100 %)
1 diff
(100.0 %id)
BQ271349 Pancreas, Purified pancreatic islet .l 447 to 934 1 to 488       488/488
(100 %)
0 diff
(100 %id)
CV030113 mixed .l 554 to 757 1 to 204       204/389
(52 %)
0 diff
(100 %id)
FN066912 breast carcinoma .l 589 to 640 1 to 53       53/54
(98 %)
2 diff
(96.3 %id)
DB062346 testis .m 1 to 527 2 to 528   tiling clone, capped   527/527
(100 %)
1 diff
(99.9 %id)
AL035303   .m 84 to 1270 1 to 1187 exact tiling clone,   1187/1187
(100 %)
0 diff
(100 %id)
AK316355 synovial membrane tissue from rheumatoidarthritis .n 1 to 1425 1 to 1425 exact tiling clone,   1425/1425
(100 %)
1 diff
(100.0 %id)
DC296470 synovial membrane tissue from rheumatioidarthritis .n 1 to 545 1 to 545       545/545
(100 %)
0 diff
(100 %id)
BX283494 placenta .n 10 to 395 1 to 386       386/386
(100 %)
1 diff
(99.8 %id)
BG620478 placenta .n 10 to 694 1 to 693       693/694
(99 %)
27 diff
(96.2 %id)
BU662465 blood .n 11 to 537 13 to 539       527/539
(97 %)
6 diff
(98.9 %id)
CD693429 normal nasopharynx .n 16 to 610 17 to 611       595/611
(97 %)
7 diff
(98.9 %id)
DC429113   .n 16 to 604 1 to 589       589/589
(100 %)
0 diff
(100 %id)
AK316219   .n 33 to 1093 1 to 1061 V89A     1061/1061
(100 %)
1 diff
(100.0 %id)
DC428845   .n 33 to 616 1 to 584       584/584
(100 %)
1 diff
(99.9 %id)
DC378449   .n 33 to 589 1 to 557       557/557
(100 %)
0 diff
(100 %id)
AK298711   .n 35 to 1297 1 to 1263 K144E tiling clone,   1263/1263
(100 %)
1 diff
(100.0 %id)
DC428924   .n 35 to 628 1 to 594       594/594
(100 %)
0 diff
(100 %id)
DC429099   .n 35 to 629 1 to 595       595/595
(100 %)
1 diff
(99.9 %id)
DC428972   .n 46 to 625 1 to 580       580/580
(100 %)
0 diff
(100 %id)
DC382326 placenta .n 59 to 627 1 to 569       569/569
(100 %)
0 diff
(100 %id)
BU934486 mixed (pool of 40 RNAs) .o 1 to 720 1 to 730   tiling clone,   732/756
(96 %)
19 diff
(97.5 %id)
CR735628 lymph, lymphoma, cell line .o 16 to 385 35 to 404       370/406
(91 %)
7 diff
(98.3 %id)
BC062541 Lymph, lymphoma .o 19 to 1810 1 to 1794 exact tiling clone, available from MGC, AAA   1794/1794
(100 %)
2 diff
(99.9 %id)
BM909585 lymph, lymphoma, cell line .o 20 to 902 1 to 883 C219X L222F L223A E224G V225S ...     883/1024
(86 %)
8 diff
(99.3 %id)
BQ055802 lymph, lymphoma, cell line .o 20 to 751 1 to 733       733/1105
(66 %)
3 diff
(99.8 %id)
BQ063681 lymph, lymphoma, cell line .o 20 to 751 1 to 731   available from MGC,   731/1073
(68 %)
4 diff
(99.7 %id)
AL694074   .p 1 to 557 9 to 565   tiling clone,   557/565
(98 %)
6 diff
(99.0 %id)
DA495363 brain .p 532 to 1028 2 to 498   tiling clone, capped   497/497
(100 %)
0 diff
(100 %id)
BU663016 blood .q 1 to 477 10 to 486 exact tiling clone,   477/486
(98 %)
6 diff
(98.8 %id)
TI_154188451   .r 1 to 587 123 to 708 Q130H K135N K138N tiling clone,   586/932
(62 %)
9 diff
(99.1 %id)
N75750 liver and spleen .s 160 to 364 1 to 202   tiling clone,   202/220
(91 %)
5 diff
(97.8 %id)
BP229763 brain .s 215 to 604 194 to 583       583/583
(100 %)
1 diff
(99.9 %id)
AL598035   .s 217 to 745 45 to 573   tiling clone,   573/573
(100 %)
1 diff
(99.9 %id)
AL713418 human skeletal muscle .s 217 to 532 46 to 361       361/361
(100 %)
0 diff
(100 %id)
BF695705 brain, primitive neuroectoderm .s 217 to 693 168 to 658       658/792
(83 %)
45 diff
(94.4 %id)
DA718603   .s 217 to 573 194 to 551   capped   550/550
(100 %)
1 diff
(99.9 %id)
DA213623 brain .s 237 to 737 2 to 502   capped   501/501
(100 %)
0 diff
(100 %id)
T87041 liver and spleen .s 367 to 760 1 to 406       406/408
(99 %)
16 diff
(96.1 %id)
T86335 liver and spleen .s 369 to 686 1 to 323       323/323
(100 %)
8 diff
(97.6 %id)
D81529 brain .s 615 to 953 1 to 339   tiling clone,   339/339
(100 %)
0 diff
(100 %id)
N54827 liver and spleen .s 892 to 1270 382 to 1   tiling clone,   382/427
(89 %)
3 diff
(99.3 %id)
DA438919 tongue, tumor tissue .t 1 to 598 2 to 599 exact tiling clone, capped   598/598
(100 %)
1 diff
(99.9 %id)
DB070437 testis .u 1 to 545 2 to 546   tiling clone, capped   545/545
(100 %)
0 diff
(100 %id)
DB454652 testis .u 117 to 593 1 to 477       477/478
(99 %)
1 diff
(99.8 %id)
DB030282 testis .u 123 to 722 2 to 601   tiling clone, capped   600/600
(100 %)
0 diff
(100 %id)
DB086816 testis .u 134 to 686 2 to 554   capped   553/553
(100 %)
0 diff
(100 %id)
BX494053   .u 677 to 1137 1 to 459   tiling clone,   459/459
(100 %)
3 diff
(99.4 %id)
BG996183 head_neck .u 917 to 1237 326 to 6   tiling clone,   321/378
(84 %)
0 diff
(100 %id)
BU656348 blood .u 932 to 1072 141 to 1     Submitted on the opposite strand 141/143
(98 %)
2 diff
(98.7 %id)
DB255611 uterus .va 1 to 580 2 to 581 exact tiling clone, capped   580/580
(100 %)
1 diff
(99.9 %id)
CD703350 normal nasopharynx .vb 1 to 537 32 to 568 exact tiling clone,   537/568
(94 %)
9 diff
(98.5 %id)
CD108755 brain, Pituitary .vc 1 to 776 1 to 775 exact tiling clone, AAA   775/775
(100 %)
3 diff
(99.7 %id)
BM712669 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vc 15 to 522 1 to 508 exact fully sequenced,   508/508
(100 %)
0 diff
(100 %id)
BG469721 adenocarcinoma cell line, colon .vc 16 to 782 1 to 782 exact available from MGC,   782/830
(94 %)
24 diff
(97.2 %id)
BC012094 Colon, adenocarcinoma .vc 17 to 787 1 to 771 exact tiling clone, available from MGC, AAA   771/771
(100 %)
0 diff
(100 %id)
NM_001035230.1   .vc 17 to 790 1 to 774 exact RefSeq, AAA   774/774
(100 %)
0 diff
(100 %id)
AL049702   .vc 183 to 783 1 to 601 exact     601/601
(100 %)
0 diff
(100 %id)
BU738389 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .vc 461 to 787 343 to 17   fully sequenced, AAA   327/327
(100 %)
0 diff
(100 %id)
BQ277581 mixed (pool of 40 RNAs) .vd 1 to 728 1 to 730 exact tiling clone,   730/949
(76 %)
8 diff
(99.2 %id)
AL049701   .vd 76 to 723 1 to 648 exact tiling clone,   648/648
(100 %)
0 diff
(100 %id)
BF663321 B-cells, primary B-cells from tonsils (cell line) .ve 1 to 448 1 to 448 S10A F51L V52Y Y53I L54V tiling clone, AAA   448/657
(68 %)
8 diff
(98.8 %id)
AW752329 colon .vf-u 1 to 425 1 to 425   tiling clone,   425/425
(100 %)
6 diff
(98.6 %id)
BE142145 head_neck .vf-u 389 to 921 1 to 534   tiling clone,   534/534
(100 %)
10 diff
(98.2 %id)
DB222436 trachea .vg 1 to 576 2 to 578 C20L T21Y M22Y N23E S24F ... tiling clone, capped   577/577
(100 %)
1 diff
(99.9 %id)
DA237024 brain .vh-u 1 to 575 2 to 576 exact tiling clone, capped   575/575
(100 %)
0 diff
(100 %id)
FN102160 breast carcinoma .vh-u 336 to 387 52 to 1     Submitted on the opposite strand 52/58
(89 %)
0 diff
(100 %id)
DB220526 trachea .vi-u 1 to 570 2 to 571 exact tiling clone, capped   570/570
(100 %)
0 diff
(100 %id)
DA753971   .vj 1 to 525 2 to 526 exact tiling clone, capped   525/525
(100 %)
1 diff
(99.9 %id)
DA186955 amygdala .vk 1 to 472 2 to 476 exact tiling clone, capped   475/475
(100 %)
3 diff
(99.4 %id)
AA769485 germinal center B cell .vl-u 1 to 459 461 to 3 E71K tiling clone,   459/461
(99 %)
0 diff
(100 %id)
BX487286   Gene RABGAP1L, variant not shown         Submitted on the opposite strand    
AV705882 adrenal gland Gene RABGAP1L, variant not shown         Suspected internal deletion, this clone was ignored    
AL707480 human skeletal muscle Gene RABGAP1L, variant not shown         Suspected internal deletion, this clone was ignored    
BQ025099 placenta Gene RABGAP1L, variant not shown       AAA      
AL601093   Gene RABGAP1L, variant not shown         This clone was ignored    
BP423569 small intestine Gene RABGAP1L, variant not shown         Submitted on the opposite strand    
F11873 brain, total brain Gene RABGAP1L, variant not shown              
AV725511 hypothalamus Gene RABGAP1L, variant not shown         Suspected internal deletion, this clone was ignored    
AK054962.
matches multiple genes
cerebellum Gene RABGAP1L, variant not shown       available from FLJ, This clone was ignored, also hits gene vawrabo    
AK054962.
matches multiple genes
cerebellum Gene vawrabo, variant not shown       available from FLJ, This clone was ignored, also hits gene vawrabo    
AY364260   Gene RABGAP1L, variant not shown         Suspected internal deletion, this clone was ignored    
AW978746.
matches multiple genes
  Gene RABGAP1L, variant not shown         Submitted on the opposite strand, also hits gene ralubu, verrabo    
AW978746.
matches multiple genes
  Gene verrabo, variant not shown         Submitted on the opposite strand, also hits gene ralubu, verrabo    
AW978746.
matches multiple genes
  Gene ralubu, variant not shown         Submitted on the opposite strand, also hits gene ralubu, verrabo    
DB296935.
matches multiple genes
cerebellum Gene RABGAP1L, variant not shown         This clone was ignored, also hits gene vawrabo    
DB296935.
matches multiple genes
cerebellum Gene vawrabo, variant not shown         This clone was ignored, also hits gene vawrabo    
DA060192.
matches multiple genes
cerebellum Gene RABGAP1L, variant not shown       capped This clone was ignored, also hits gene vawrabo    
DA060192.
matches multiple genes
cerebellum Gene vawrabo, variant not shown       capped This clone was ignored, also hits gene vawrabo    
BX107100 whole brain Gene RABGAP1L, variant not shown         Submitted on the opposite strand    
T65544 whole brain Gene RABGAP1L, variant not shown              
T65610 whole brain Gene RABGAP1L, variant not shown              
R13566 whole brain Gene RABGAP1L, variant not shown              
R39869 whole brain Gene RABGAP1L, variant not shown              
H10708 whole brain Gene RABGAP1L, variant not shown              
H10709 whole brain Gene RABGAP1L, variant not shown              
H12606 placenta Gene RABGAP1L, variant not shown              
H12656 placenta Gene RABGAP1L, variant not shown              
AA677797 liver and spleen Gene RABGAP1L, variant not shown              
AA761559 germinal center B cell Gene RABGAP1L, variant not shown       AAA      
AA764805 germinal center B cell Gene RABGAP1L, variant not shown       AAA      
AA805195.
matches multiple genes
germinal center B cell Gene RABGAP1L, variant not shown         This clone was ignored, also hits gene verrabo    
AA805195.
matches multiple genes
germinal center B cell Gene verrabo, variant not shown         This clone was ignored, also hits gene verrabo    
AW593098 pooled Gene RABGAP1L, variant not shown         Submitted on the opposite strand    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s, .t, .u, .va, .vb, .vc, .vd, .ve, .vf-u, .vg, .vh-u, .vi-u, .vj, .vk, .vl-u Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DC