To see this page, please, enable javaScript and styleSheets on your browser: Tools -> Internet Options ...
Reload !
Gene RAB7L1TABLE OF CONTENTS / OPEN CLOSE ALL PARAGRAPHS
Summary back to top
Compact gene diagram back to top
278 supporting clones for gene RAB7L1 back to top
cDNA accession
Links to the sequence
Tissue

most 5' clones
in red
Match
mRNA
From bp
to bp
in mRNA
From bp
to bp
in accs.
Clone encodes
complete protein
(with AA variation)
Features Anomalies
detected by
AceView
Accession
match over
(% length)
Base differences
relative to genome
(% identity)
NM_003929.2   .a 1 to 3307 1 to 3307 exact RefSeq, AAA Possibly primed on the genome, locally A rich (16/17 A in genome downstream of last aligned base) 3307/3307
(100 %)
0 diff
(100 %id)
DC365059 esophagus .a 17 to 480 1 to 464   tiling clone,   464/464
(100 %)
0 diff
(100 %id)
DA935666 Spleen .a 22 to 622 2 to 605   capped   604/604
(100 %)
4 diff
(99.4 %id)
BQ068649 brain, neuroblastoma, cell line .a 33 to 853 19 to 841       823/1009
(81 %)
16 diff
(98.5 %id)
BX647960 human endometrium carcinoma cell line .a 36 to 1847 1 to 1811 exact tiling clone, available from DKFZ, AAA Possibly primed on the genome, locally A rich (16/17 A in genome downstream of last aligned base) 1811/1811
(100 %)
8 diff
(99.6 %id)
AL708367 human skeletal muscle .a 36 to 653 1 to 619       619/619
(100 %)
4 diff
(99.4 %id)
DA174104 amygdala .a 46 to 618 2 to 574   capped   573/573
(100 %)
0 diff
(100 %id)
DA256969 caudate nucleus .a 69 to 657 2 to 596   capped   590/595
(99 %)
3 diff
(99.5 %id)
BX642353 human skeletal muscle .a 1464 to 1850 387 to 1       387/387
(100 %)
0 diff
(100 %id)
NM_001135662.1   .b 1 to 3206 1 to 3206 exact RefSeq, AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 3206/3206
(100 %)
0 diff
(100 %id)
DA002262   .b 2 to 564 2 to 568   capped   567/567
(100 %)
6 diff
(99.0 %id)
DA284582 corpus callosum .b 2 to 545 2 to 545   tiling clone, capped   544/544
(100 %)
0 diff
(100 %id)
DA477601   .b 2 to 556 2 to 556   capped   555/555
(100 %)
2 diff
(99.7 %id)
DA513505 brain .b 8 to 555 2 to 550   capped   549/552
(99 %)
3 diff
(99.5 %id)
BP196615 adrenal gland .b 9 to 591 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
DA024450   .b 10 to 584 2 to 576   capped   575/575
(100 %)
2 diff
(99.7 %id)
AK313000 cerebellum .b 12 to 851 1 to 840 K34R     840/840
(100 %)
3 diff
(99.7 %id)
DA074905 cerebellum .b 13 to 593 2 to 582   capped   581/581
(100 %)
3 diff
(99.5 %id)
DA169967 amygdala .b 22 to 583 2 to 563   capped   562/562
(100 %)
3 diff
(99.5 %id)
DA634243 Kidney .b 22 to 602 2 to 582   capped   581/581
(100 %)
2 diff
(99.7 %id)
DA740643   .b 22 to 568 2 to 548   capped   547/547
(100 %)
2 diff
(99.7 %id)
BP206846 coronary artery .b 23 to 602 1 to 581       581/582
(99 %)
6 diff
(99.0 %id)
BP307275 brain .b 25 to 612 1 to 588       588/592
(99 %)
15 diff
(97.5 %id)
BP307327 brain .b 25 to 611 1 to 587       587/587
(100 %)
3 diff
(99.5 %id)
DA345615 substantia nigra .b 27 to 594 2 to 569   capped   568/568
(100 %)
3 diff
(99.5 %id)
CD699800 normal nasopharynx .b 28 to 562 14 to 548       535/548
(97 %)
6 diff
(99.0 %id)
BP196180 adrenal gland .b 47 to 628 1 to 582       582/582
(100 %)
0 diff
(100 %id)
BM551879 melanotic melanoma, skin .b 52 to 1047 11 to 1017 K144X S183V     1007/1030
(97 %)
34 diff
(96.7 %id)
DA959239 Spleen .b 56 to 611 2 to 557   capped   556/556
(100 %)
2 diff
(99.7 %id)
DR003922 Liver .b 62 to 766 9 to 713       705/713
(98 %)
6 diff
(99.2 %id)
BE545469 cervical carcinoma cell line, cervix .b 64 to 663 1 to 610       610/1024
(59 %)
21 diff
(98.0 %id)
BC002585 Ovary, adenocarcinoma .b 67 to 1746 1 to 1677 exact tiling clone, available from MGC, AAA Possibly primed on the genome, locally A rich (16/17 A in genome downstream of last aligned base) 1677/1677
(100 %)
4 diff
(99.8 %id)
BE315408 adenocarcinoma cell line, ovary .b 86 to 739 1 to 654       654/719
(90 %)
4 diff
(99.5 %id)
BM561547 blood, natural killer cells, cell line .b 112 to 1019 1 to 914 exact     914/916
(99 %)
27 diff
(97.1 %id)
AW328026 Burkitt lymphoma, lymph .b 118 to 725 1 to 608     Possibly primed on the genome, locally A rich (16/17 A in genome downstream of last aligned base) 608/608
(100 %)
4 diff
(99.4 %id)
AK223514   .b 124 to 1077 1 to 954 L23P     954/954
(100 %)
4 diff
(99.6 %id)
AA311936   .b 172 to 617 1 to 446       446/454
(98 %)
1 diff
(99.8 %id)
BE733431 choriocarcinoma, placenta .b 191 to 959 1 to 758 G2A S3A R4A D5T H6P ... tiling clone,   758/910
(83 %)
22 diff
(97.6 %id)
D84488 placenta .b 200 to 2643 1 to 2443 exact tiling clone,   2443/2443
(100 %)
10 diff
(99.6 %id)
TI_1948084234   .b 237 to 850 743 to 129       615/1176
(52 %)
6 diff
(99.5 %id)
BT019540   .b 240 to 851 1 to 612 exact     612/612
(100 %)
1 diff
(99.9 %id)
CR542010   .b 240 to 848 1 to 609       609/609
(100 %)
0 diff
(100 %id)
CV029228 mixed .b 240 to 850 1 to 611       611/649
(94 %)
0 diff
(100 %id)
BE696115 colon .b 246 to 855 1 to 609       609/609
(100 %)
14 diff
(97.8 %id)
AW854672 colon .b 247 to 583 339 to 6       334/342
(97 %)
3 diff
(99.2 %id)
BE696132 colon .b 247 to 508 260 to 2       259/263
(98 %)
3 diff
(98.9 %id)
BE696105 colon .b 251 to 868 6 to 617       612/643
(95 %)
20 diff
(96.9 %id)
BQ348705 head_neck .b 252 to 770 1 to 516       514/516
(99 %)
11 diff
(97.9 %id)
BQ348914 head_neck .b 253 to 819 37 to 604       568/604
(94 %)
13 diff
(97.9 %id)
TI_1948084512   .b 254 to 850 729 to 130       600/1133
(52 %)
9 diff
(99.3 %id)
BE696122 colon .b 255 to 906 1 to 650       650/659
(98 %)
16 diff
(97.6 %id)
BQ348706 head_neck .b 259 to 782 9 to 536       528/536
(98 %)
21 diff
(96.1 %id)
BQ348913 head_neck .b 260 to 778 15 to 532       518/532
(97 %)
9 diff
(98.4 %id)
BQ348912 head_neck .b 264 to 766 16 to 527       512/527
(97 %)
15 diff
(97.2 %id)
BQ348702 head_neck .b 265 to 826 21 to 584       564/587
(96 %)
13 diff
(97.8 %id)
BE696106 colon .b 315 to 946 644 to 17       628/699
(89 %)
7 diff
(99.0 %id)
AW328027 Burkitt lymphoma, lymph .b 1238 to 1746 526 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (16/17 A in genome downstream of last aligned base) 508/508
(100 %)
1 diff
(99.9 %id)
BU161137 melanotic melanoma, cell line, skin .c 1 to 812 1 to 818   tiling clone,   818/921
(88 %)
23 diff
(97.6 %id)
BM051080 eye, normal pigmented retinal epithelium .c 10 to 886 1 to 893       893/928
(96 %)
39 diff
(95.8 %id)
BG685291 B-cells, primary B-cells from tonsils (cell line) .c 64 to 814 1 to 751       751/751
(100 %)
1 diff
(99.9 %id)
BG757213 B-cells, primary B-cells from tonsils (cell line) .c 64 to 874 1 to 812   tiling clone,   812/930
(87 %)
24 diff
(97.5 %id)
DC362027 Kidney .c 82 to 643 1 to 562       562/562
(100 %)
1 diff
(99.9 %id)
BU854895 ovary, teratocarcinoma, cell line .c 232 to 1101 9 to 873 V18M E55* tiling clone,   865/943
(91 %)
20 diff
(97.9 %id)
BU553378 ovary, teratocarcinoma, cell line .c 233 to 788 1 to 564       564/1179
(47 %)
17 diff
(98.6 %id)
BP270509 small intestine .c 336 to 917 1 to 582       582/582
(100 %)
0 diff
(100 %id)
DA425646 colon .c 350 to 925 2 to 577   tiling clone, capped   576/576
(100 %)
0 diff
(100 %id)
BF115216 fibrotheoma, ovary .c 357 to 899 1 to 542     Submitted on the opposite strand 542/546
(99 %)
5 diff
(99.1 %id)
DA537489 Kidney .c 360 to 904 2 to 546   capped   545/545
(100 %)
1 diff
(99.9 %id)
DA621534 Kidney .c 368 to 940 2 to 575   capped   574/574
(100 %)
2 diff
(99.7 %id)
BP369247 testis .d 1 to 602 1 to 566 S67T A68T C69F V70S I71N ... tiling clone, Suspected internal deletion 566/566
(100 %)
3 diff
(99.5 %id)
NM_001135663.1   .e 1 to 3421 1 to 3421 exact RefSeq, AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 3421/3421
(100 %)
0 diff
(100 %id)
DA247832 brain .e 2 to 459 2 to 459   tiling clone, capped   458/458
(100 %)
1 diff
(99.8 %id)
DB212006 trachea .e 2 to 494 2 to 494   capped   493/493
(100 %)
3 diff
(99.4 %id)
DC395379 testis .e 9 to 562 1 to 554       554/554
(100 %)
2 diff
(99.7 %id)
DC361654 Kidney .e 13 to 562 1 to 551       551/551
(100 %)
2 diff
(99.7 %id)
DC308881 cerebellum .e 19 to 605 1 to 587       587/587
(100 %)
2 diff
(99.7 %id)
DC297410   .e 21 to 534 1 to 516       516/516
(100 %)
5 diff
(99.1 %id)
DC368622   .e 21 to 591 1 to 571       571/571
(100 %)
2 diff
(99.7 %id)
DA318023 hippocampus .e 22 to 460 2 to 440   capped   439/439
(100 %)
1 diff
(99.8 %id)
DC403954 testis .e 23 to 586 1 to 564       564/564
(100 %)
2 diff
(99.7 %id)
BQ680823 melanotic melanoma, cell line, skin .e 24 to 557 1 to 534       534/1006
(53 %)
24 diff
(97.7 %id)
DC358765 lung .e 26 to 591 1 to 566       566/566
(100 %)
2 diff
(99.7 %id)
DC371525   .e 31 to 601 1 to 571       571/571
(100 %)
2 diff
(99.7 %id)
DC314882 amygdala .e 32 to 598 1 to 567   tiling clone,   567/567
(100 %)
0 diff
(100 %id)
DC359242 lung .e 32 to 578 1 to 547       547/547
(100 %)
1 diff
(99.9 %id)
DC384109 Prostate .e 33 to 591 1 to 559       559/559
(100 %)
2 diff
(99.7 %id)
DA382494 thalamus .e 43 to 501 70 to 529   capped   460/528
(87 %)
6 diff
(98.9 %id)
DC361465 Kidney .e 44 to 601 1 to 558       558/558
(100 %)
2 diff
(99.7 %id)
DC412671 kidney, tumor tissue .e 53 to 597 1 to 545       545/545
(100 %)
1 diff
(99.9 %id)
AW451070   .e 57 to 332 276 to 1       276/285
(96 %)
1 diff
(99.7 %id)
BE221777 Kidney .e 66 to 283 218 to 1       218/218
(100 %)
0 diff
(100 %id)
AW271534 Kidney .e 76 to 300 225 to 1       225/225
(100 %)
2 diff
(99.2 %id)
BE501959 Kidney .e 81 to 331 251 to 1       251/251
(100 %)
0 diff
(100 %id)
BF063786 colon, colon tumor, RER+ .e 85 to 290 206 to 1       206/206
(100 %)
0 diff
(100 %id)
DC354449 Kidney .e 102 to 650 1 to 550       550/551
(99 %)
3 diff
(99.5 %id)
DC428235   .e 102 to 650 1 to 549       549/549
(100 %)
1 diff
(99.9 %id)
BE326920 Kidney .e 196 to 332 137 to 1       137/137
(100 %)
0 diff
(100 %id)
AK303879 trachea .e 250 to 1690 1 to 1440 exact tiling clone,   1440/1440
(100 %)
5 diff
(99.7 %id)
DC414122 trachea .e 250 to 863 1 to 615       615/615
(100 %)
3 diff
(99.6 %id)
AW296219   .e 357 to 626 1 to 270     Submitted on the opposite strand 270/283
(95 %)
9 diff
(96.9 %id)
DC390144 Spleen .e 400 to 903 1 to 503       503/503
(100 %)
1 diff
(99.9 %id)
DA478543   .f 1 to 572 2 to 573   tiling clone, capped   572/572
(100 %)
2 diff
(99.7 %id)
BP203370 coronary artery .f 25 to 600 1 to 577   tiling clone,   577/582
(99 %)
2 diff
(99.7 %id)
DA623899 Kidney .f 26 to 580 2 to 556   tiling clone, capped   555/555
(100 %)
1 diff
(99.9 %id)
BG768835 melanotic melanoma, high MDR (cell line), skin .f 68 to 715 1 to 647 H6T L7C F8S V10C L11W ... tiling clone,   647/657
(98 %)
5 diff
(99.3 %id)
CV572461 cornea, eye .g 1 to 619 1 to 619 exact tiling clone,   619/619
(100 %)
1 diff
(99.9 %id)
CK002751 brain/CNS, Bulk tissue from Human Spinal cord .h 1 to 614 1 to 613 exact tiling clone,   613/665
(92 %)
6 diff
(99.1 %id)
BP276075 Kidney .h 9 to 590 1 to 582 exact     582/582
(100 %)
1 diff
(99.9 %id)
DB163676 thymus .h 20 to 598 2 to 580 exact tiling clone, capped   579/579
(100 %)
1 diff
(99.9 %id)
CB151832 cervix, Uterine .i 1 to 577 1 to 577 exact tiling clone,   577/577
(100 %)
1 diff
(99.9 %id)
NM_001135664.1   .j 1 to 3053 1 to 3053 exact RefSeq, AAA Possibly primed on the genome, locally A rich (16/17 A in genome downstream of last aligned base) 3053/3053
(100 %)
0 diff
(100 %id)
DA625416 Kidney .j 14 to 554 2 to 542   tiling clone, capped   541/541
(100 %)
1 diff
(99.9 %id)
BE384288 melanotic melanoma, skin .j 17 to 582 1 to 566       566/566
(100 %)
2 diff
(99.7 %id)
DA441474 tongue, tumor tissue .j 20 to 599 2 to 581   capped   580/580
(100 %)
1 diff
(99.9 %id)
AK308359 thymus .j 32 to 1337 1 to 1305 exact tiling clone,   1305/1305
(100 %)
8 diff
(99.4 %id)
DB149327 thymus .j 33 to 520 2 to 489   capped   488/488
(100 %)
3 diff
(99.4 %id)
CD706989 normal nasopharynx .j 43 to 201 32 to 190       159/190
(83 %)
6 diff
(96.9 %id)
DA377295 thalamus .j 47 to 624 2 to 579   tiling clone, capped   578/578
(100 %)
0 diff
(100 %id)
BG759306 B-cells, primary B-cells from tonsils (cell line) .j 51 to 771 1 to 721 K100T M101D M102D R103E N104K ... tiling clone,   721/723
(99 %)
5 diff
(99.4 %id)
DA602848   .j 103 to 680 2 to 579   capped   578/578
(100 %)
1 diff
(99.9 %id)
CV341524 head_neck .j 208 to 526 22 to 351       333/351
(94 %)
37 diff
(89.5 %id)
BE696116 colon .j 209 to 789 600 to 20 exact     581/600
(96 %)
3 diff
(99.5 %id)
TI_1948083963   .j 209 to 697 626 to 137       490/1115
(43 %)
11 diff
(99.1 %id)
BE696110 colon .j 210 to 793 598 to 15 T114N     584/598
(97 %)
1 diff
(99.9 %id)
BE696104 colon .j 211 to 792 611 to 30 L34P     586/615
(95 %)
2 diff
(99.7 %id)
TI_1948084790   .j 280 to 697 544 to 126       419/1099
(38 %)
4 diff
(99.7 %id)
BE696129 colon .j 298 to 421 1 to 121       121/121
(100 %)
6 diff
(95.1 %id)
BE696139 colon .j 311 to 794 489 to 6       484/502
(96 %)
0 diff
(100 %id)
DA061036 cerebellum .j 316 to 861 2 to 547   capped   546/546
(100 %)
1 diff
(99.9 %id)
DA479972   .j 348 to 905 2 to 559   capped   558/559
(99 %)
3 diff
(99.5 %id)
DA630187 Kidney .j 349 to 919 2 to 572   capped   571/571
(100 %)
3 diff
(99.5 %id)
BE696097 colon .j 365 to 509 146 to 2       145/146
(99 %)
3 diff
(98.0 %id)
BE696117 colon .j 384 to 655 273 to 1       273/316
(86 %)
6 diff
(98.2 %id)
AW604487 colon .j 416 to 669 256 to 2       255/256
(99 %)
2 diff
(99.3 %id)
AW606675 head_neck .j 459 to 642 1 to 189       195/189
(103 %)
7 diff
(96.3 %id)
BE696125 colon .j 463 to 643 183 to 4       180/183
(98 %)
1 diff
(99.5 %id)
AW854673 colon .j 497 to 789 300 to 10       291/300
(97 %)
1 diff
(99.7 %id)
BE696127 colon .j 562 to 789 247 to 20       228/247
(92 %)
0 diff
(100 %id)
BE696131 colon .j 562 to 789 247 to 20       228/247
(92 %)
0 diff
(100 %id)
BX482924   .j 581 to 1207 1 to 625       625/625
(100 %)
7 diff
(98.9 %id)
BP326868 prostata .j 609 to 1128 1 to 521   tiling clone,   521/579
(89 %)
22 diff
(96.3 %id)
AW854671 colon .j 667 to 793 6 to 131       126/145
(86 %)
5 diff
(96.6 %id)
CA951094 Pancreas, Purified pancreatic islet .j 693 to 1221 1 to 528       528/528
(100 %)
6 diff
(98.9 %id)
BE169714 head_neck .j 708 to 1130 439 to 19     Submitted on the opposite strand 421/439
(95 %)
0 diff
(100 %id)
CN348447 embryonic stem cells, embryoid bodiesderived from H1, H7 and H9 cells .j 727 to 1213 1 to 486       486/486
(100 %)
6 diff
(98.8 %id)
BE272266 adenocarcinoma cell line, ovary .j 728 to 1279 1 to 551   tiling clone,   551/551
(100 %)
3 diff
(99.5 %id)
CK903149 Pancreas, Purified pancreatic islet .j 737 to 1300 1 to 563     Submitted on the opposite strand 563/563
(100 %)
3 diff
(99.5 %id)
AW377997 head_neck .j 740 to 1319 618 to 39       580/618
(93 %)
14 diff
(97.8 %id)
DA712893   .j 793 to 1344 2 to 552   capped   551/551
(100 %)
3 diff
(99.5 %id)
AW377900 head_neck .j 798 to 1266 551 to 84       468/551
(84 %)
0 diff
(100 %id)
AW378000 head_neck .j 842 to 1315 479 to 7       473/479
(98 %)
0 diff
(100 %id)
AW377988 head_neck .j 844 to 1235 394 to 3       392/394
(99 %)
0 diff
(100 %id)
BF688607 eye, normal pigmented retinal epithelium .j 847 to 1497 1 to 647       647/647
(100 %)
13 diff
(98.0 %id)
BP198821 brain .j 886 to 1468 1 to 582       582/582
(100 %)
3 diff
(99.5 %id)
DA952028 Spleen .j 887 to 1446 2 to 561   capped   560/560
(100 %)
3 diff
(99.5 %id)
BF924842 nervous_tumor .j 904 to 1397 507 to 2     Submitted on the opposite strand 506/507
(99 %)
0 diff
(100 %id)
BP311236 brain .j 905 to 1488 1 to 583       583/583
(100 %)
2 diff
(99.7 %id)
TI_149308469   .j 943 to 1593 721 to 72   AAA Possibly primed on the genome, locally A rich (16/17 A in genome downstream of last aligned base) 650/956
(67 %)
2 diff
(99.8 %id)
CB851446 lung, Primary Lung Epithelial Cells .j 943 to 1558 615 to 1       615/623
(98 %)
2 diff
(99.7 %id)
CD701952 normal nasopharynx .j 1009 to 1526 37 to 554       518/554
(93 %)
6 diff
(99.0 %id)
AW069137 bone marrow stroma .j 1045 to 1593 569 to 20   tiling clone, AAA Possibly primed on the genome, locally A rich (16/17 A in genome downstream of last aligned base) 550/550
(100 %)
1 diff
(99.9 %id)
CF995651 mixed .j 1061 to 1828 8 to 773       766/775
(98 %)
3 diff
(99.7 %id)
BP393720 pancreatic islet .j 1095 to 1593 1 to 499     Submitted on the opposite strand 499/499
(100 %)
2 diff
(99.6 %id)
AI003772 Kidney .j 1128 to 1593 465 to 1       465/465
(100 %)
1 diff
(99.8 %id)
AW304257 brain, three pooled meningiomas .j 1128 to 1596 468 to 1       468/468
(100 %)
2 diff
(99.6 %id)
AI624133 adenocarcinoma, Pancreas .j 1131 to 1595 464 to 1       464/464
(100 %)
2 diff
(99.6 %id)
CK903150 Pancreas, Purified pancreatic islet .j 1142 to 1559 417 to 1     Submitted on the opposite strand 417/417
(100 %)
1 diff
(99.8 %id)
BU594328 mixed (pool of 40 RNAs) .j 1146 to 1903 1 to 761       761/804
(94 %)
20 diff
(97.6 %id)
AW149036 Kidney, renal cell tumor .j 1189 to 1601 413 to 1       413/414
(99 %)
1 diff
(99.8 %id)
AW956191   .j 1202 to 1592 391 to 1     Submitted on the opposite strand 391/538
(72 %)
3 diff
(99.5 %id)
CA950844 Pancreas, Purified pancreatic islet .j 1217 to 1593 377 to 1       377/377
(100 %)
0 diff
(100 %id)
EC537862 Prostate .j 1272 to 1365 1 to 93       93/102
(91 %)
2 diff
(98.1 %id)
EC552346 Prostate .j 1272 to 1365 1 to 92       92/100
(92 %)
3 diff
(97.0 %id)
AA375087 lung .j 1274 to 1593 321 to 1     Submitted on the opposite strand 321/321
(100 %)
4 diff
(98.8 %id)
BF964659 muscle (skeletal) .j 1292 to 1813 1 to 537       537/866
(62 %)
31 diff
(96.5 %id)
BM761440 lymph node, stomach .j 1393 to 2008 1 to 616       616/616
(100 %)
2 diff
(99.7 %id)
BM842035 lymph node, stomach .j 1393 to 2050 1 to 658   tiling clone,   658/658
(100 %)
2 diff
(99.7 %id)
DA391029 thalamus .k 1 to 589 2 to 591   tiling clone, capped   590/590
(100 %)
2 diff
(99.7 %id)
BP193911 brain .k 13 to 594 1 to 582       582/582
(100 %)
4 diff
(99.4 %id)
BP252083 Kidney .k 14 to 586 1 to 573   tiling clone,   573/573
(100 %)
3 diff
(99.5 %id)
DA304666 hippocampus .k 43 to 615 2 to 575 F70L T71H S72L M73Y T74D ... tiling clone, capped   574/577
(99 %)
4 diff
(99.4 %id)
DA380753 thalamus .l 1 to 616 2 to 572 exact tiling clone, capped   566/571
(99 %)
0 diff
(100 %id)
DA997883   .l 5 to 565 2 to 563   tiling clone, capped   562/562
(100 %)
1 diff
(99.9 %id)
BG818502 anaplastic oligodendroglioma with 1p/19qloss, brain .m 1 to 695 1 to 711 W21C S22E R23P S24L E26G ... tiling clone,   711/754
(94 %)
41 diff
(94.6 %id)
AV723119 hypothalamus .m 8 to 594 12 to 588 E73G K74*     581/588
(98 %)
17 diff
(97.2 %id)
AV723126 hypothalamus .m 14 to 596 10 to 583 Q96P T97K K98S S101W W102S ... tiling clone,   574/583
(98 %)
14 diff
(97.6 %id)
DB131285 thymus .n 1 to 556 2 to 557 exact tiling clone, capped   556/556
(100 %)
2 diff
(99.7 %id)
AL531102 brain, fetal liver, Liver, neuroblastoma cells .o 1 to 1033 1 to 1022 exact tiling clone,   1022/1025
(99 %)
19 diff
(98.2 %id)
W44379 senescent fibroblast .p 1 to 223 3 to 224   tiling clone,   224/224
(100 %)
6 diff
(97.4 %id)
AK311085   .p 27 to 1496 1 to 1469   tiling clone,   1469/1469
(100 %)
6 diff
(99.6 %id)
DC299686   .p 27 to 582 1 to 556       556/556
(100 %)
2 diff
(99.7 %id)
W45510 senescent fibroblast .p 983 to 1501 522 to 1   tiling clone,   522/524
(99 %)
16 diff
(97.0 %id)
BX283323 eye, normal pigmented retinal epithelium .p 1406 to 1909 1 to 504   tiling clone,   504/504
(100 %)
3 diff
(99.5 %id)
BG748117 eye, normal pigmented retinal epithelium .p 1406 to 2271 1 to 862       862/866
(99 %)
31 diff
(96.5 %id)
AU142443   .p 1410 to 2176 2 to 765   tiling clone, capped   764/764
(100 %)
11 diff
(98.6 %id)
AV706585 adrenal gland .p 1416 to 2040 1 to 624       624/651
(95 %)
27 diff
(95.9 %id)
BE744536 adenocarcinoma cell line, ovary .p 1441 to 2208 1 to 757   tiling clone,   757/939
(80 %)
23 diff
(97.6 %id)
AA354301   .p 1445 to 1820 1 to 379   tiling clone,   379/379
(100 %)
7 diff
(98.2 %id)
AI202933 pooled germ cell tumors .p 1467 to 1717 251 to 1       251/384
(65 %)
0 diff
(100 %id)
AI962717 pooled germ cell tumors .p 1467 to 1716 250 to 1       250/318
(78 %)
4 diff
(98.8 %id)
BF062181 pooled germ cell tumors .p 1467 to 1717 251 to 1       251/452
(55 %)
0 diff
(100 %id)
BX453583 fetal liver, Liver .p 1483 to 2056 574 to 1       574/791
(72 %)
6 diff
(99.3 %id)
EL954240 eyeball .p 1493 to 1769 12 to 288       277/288
(96 %)
6 diff
(98.0 %id)
BQ437177 eye, retinoblastoma .p 1523 to 2173 12 to 660       649/869
(74 %)
27 diff
(96.9 %id)
BQ051135 leiomyosarcoma, uterus .p 1529 to 2319 1 to 800       800/1101
(72 %)
27 diff
(97.6 %id)
BI050663 placenta_normal .p 1546 to 1803 22 to 280       259/280
(92 %)
6 diff
(97.9 %id)
AI990938 pooled germ cell tumors .p 1569 to 1821 493 to 241       253/493
(51 %)
0 diff
(100 %id)
BF028201 bladder, carcinoma, cell line .p 1661 to 2117 1 to 459       459/1112
(41 %)
12 diff
(99.0 %id)
AW271214 Kidney .p 1755 to 2228 474 to 1       474/474
(100 %)
4 diff
(99.2 %id)
BG253451 adenocarcinoma, cell line, Liver .p 1756 to 2228 66 to 537   AAA Possibly primed on the genome, locally A rich (12/14 A in genome downstream of last aligned base) 472/537
(87 %)
6 diff
(98.9 %id)
BG178601 adenocarcinoma, cell line, Prostate .p 1762 to 2399 1 to 650       650/851
(76 %)
15 diff
(98.3 %id)
AW880145 ovary .p 1796 to 2144 349 to 1       349/406
(85 %)
6 diff
(98.6 %id)
AA353655   .p 1807 to 2084 1 to 278   tiling clone,   278/278
(100 %)
2 diff
(99.3 %id)
AL563943 brain, fetal liver, Liver, neuroblastoma cells .p 1818 to 2924 1096 to 1       1096/1096
(100 %)
22 diff
(98.0 %id)
BM997534 lung, Metastatic Chondrosarcoma .p 1818 to 2393 594 to 19   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 576/576
(100 %)
7 diff
(98.8 %id)
AI754421 bone marrow stroma .p 1844 to 2393 568 to 18   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 551/551
(100 %)
6 diff
(99.0 %id)
AI192465 lung .p 1872 to 2399 528 to 1       528/528
(100 %)
4 diff
(99.3 %id)
AW438946 serous papillary carcinoma, high grade, 2pooled tumors, uterus .p 1958 to 2230 275 to 1       275/275
(100 %)
5 diff
(98.2 %id)
DT217183 brain .p 1964 to 2590 14 to 641       628/641
(97 %)
6 diff
(99.1 %id)
CF142018 CNCAP(3)T-225 cell line, Prostate .p 1972 to 2459 8 to 495   tiling clone,   488/495
(98 %)
6 diff
(98.8 %id)
TI_154172911   .p 1972 to 2623 97 to 750       654/1195
(54 %)
15 diff
(98.8 %id)
AI474127 colon, moderately-differentiated adenocarcinoma .p 1986 to 2393 408 to 1       408/408
(100 %)
3 diff
(99.3 %id)
AI090377 senescent fibroblast .p 1989 to 2393 430 to 27   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 404/404
(100 %)
4 diff
(99.1 %id)
AA831426 germinal center B cell .p 2029 to 2393 410 to 46   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 365/365
(100 %)
4 diff
(99.0 %id)
BX374162   .p 2111 to 2954 858 to 1     Submitted on the opposite strand 858/927
(92 %)
40 diff
(95.7 %id)
BM457945 leiomyosarcoma, uterus .p 2134 to 2955 1 to 822   tiling clone,   822/1033
(79 %)
9 diff
(99.2 %id)
BQ008030 Chondrosarcoma, Left Pelvis .p 2226 to 2956 750 to 19   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 732/732
(100 %)
6 diff
(99.2 %id)
BQ004276 Chondrosarcoma, Left Pelvis .p 2240 to 2956 731 to 19   tiling clone, AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 713/713
(100 %)
5 diff
(99.3 %id)
BQ432172 melanotic melanoma, skin .p 2260 to 2956 1 to 698       698/702
(99 %)
7 diff
(99.1 %id)
BG337815 leiomyosarcoma cell line, uterus .p 2357 to 2956 1 to 609   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 609/609
(100 %)
27 diff
(95.6 %id)
BG338251 leiomyosarcoma cell line, uterus .p 2357 to 2953 1 to 600       600/627
(95 %)
18 diff
(97.2 %id)
BQ574643 Chondrosarcoma Grade II, Left Pelvis .p 2365 to 2956 612 to 19   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 594/704
(84 %)
2 diff
(99.8 %id)
AJ709820 heart .p 2390 to 2820 20 to 447       428/447
(95 %)
6 diff
(98.7 %id)
BE840477 prostate_normal .p 2396 to 2779 14 to 397       384/417
(92 %)
6 diff
(98.6 %id)
BE840554 prostate_normal .p 2396 to 2779 14 to 397       384/417
(92 %)
6 diff
(98.6 %id)
AU159762   .p 2396 to 2956 553 to 1       553/553
(100 %)
16 diff
(97.2 %id)
BF589452 pooled .p 2418 to 2956 554 to 16   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 539/539
(100 %)
1 diff
(99.9 %id)
BM728047 eye, fetal eyes, lens, eye anterior segment,optic nerve, retina, Retina Foveal and Macular, RPE andChoroid .p 2431 to 2956 1 to 526   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 526/526
(100 %)
1 diff
(99.9 %id)
CA312011 Human Lung Epithelial cells, lung .p 2437 to 2956 538 to 19   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 520/529
(98 %)
1 diff
(99.9 %id)
AW629066 pooled .p 2441 to 2956 516 to 1       516/516
(100 %)
2 diff
(99.7 %id)
AW206806   .p 2443 to 2956 531 to 18   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 514/514
(100 %)
1 diff
(99.9 %id)
AW888600 nervous_tumor .p 2450 to 2678 261 to 32       230/261
(88 %)
0 diff
(100 %id)
AW629075 pooled .p 2459 to 2956 498 to 1       498/498
(100 %)
2 diff
(99.6 %id)
AW665687 pooled .p 2459 to 2956 498 to 1       498/498
(100 %)
1 diff
(99.8 %id)
T39231 lung .p 2465 to 2707 1 to 243   fully sequenced,   243/243
(100 %)
2 diff
(99.2 %id)
BU858646 mixed (pool of 40 RNAs) .p 2486 to 2953 1 to 468       468/506
(92 %)
3 diff
(99.5 %id)
AI765862 2 pooled tumors (clear cell type), Kidney .p 2493 to 2957 469 to 5       465/469
(99 %)
0 diff
(100 %id)
AW025234 Kidney .p 2498 to 2956 459 to 1       459/459
(100 %)
2 diff
(99.6 %id)
AI709173 aorta .p 2503 to 2956 454 to 1       454/454
(100 %)
3 diff
(99.4 %id)
AI336047 lung .p 2521 to 2955 439 to 5       435/439
(99 %)
0 diff
(100 %id)
AI084623 senescent fibroblast .p 2526 to 2956 443 to 14   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 430/430
(100 %)
11 diff
(97.5 %id)
CA312100 Human Lung Epithelial cells, lung .p 2528 to 2954 440 to 14   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 427/435
(98 %)
1 diff
(99.8 %id)
BG685643 B-cells, primary B-cells from tonsils (cell line) .p 2530 to 2955 1 to 428   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 428/428
(100 %)
6 diff
(98.6 %id)
BG756481 B-cells, primary B-cells from tonsils (cell line) .p 2530 to 2955 1 to 421   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 421/421
(100 %)
7 diff
(98.4 %id)
AI302587 2 pooled tumors (clear cell type), Kidney .p 2542 to 2957 416 to 2   tiling clone,   415/416
(99 %)
0 diff
(100 %id)
BF129213 B-cells, primary B-cells from tonsils (cell line) .p 2552 to 2953 1 to 404       404/628
(64 %)
12 diff
(98.1 %id)
TI_159712094   .p 2580 to 2956 517 to 141   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 377/998
(37 %)
8 diff
(99.2 %id)
BF439874 pooled .p 2581 to 2956 389 to 11   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 379/379
(100 %)
3 diff
(99.3 %id)
BE465239 Kidney .p 2587 to 2957 393 to 23       371/393
(94 %)
0 diff
(100 %id)
TI_157599079   .p 2589 to 2956 447 to 80   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 368/1187
(31 %)
5 diff
(99.6 %id)
AW087630 pooled .p 2613 to 2957 350 to 7       344/350
(98 %)
0 diff
(100 %id)
AI138359   .p 2617 to 2957 347 to 7       341/347
(98 %)
0 diff
(100 %id)
AI801856 Prostate .p 2639 to 2955 317 to 1       317/317
(100 %)
0 diff
(100 %id)
AA809701 colon .p 2643 to 2912 318 to 49   AAA   270/285
(94 %)
0 diff
(100 %id)
CF528995 placenta .p 2650 to 2956 324 to 18   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 307/307
(100 %)
0 diff
(100 %id)
AW028502 Kidney .p 2652 to 2956 305 to 1       305/305
(100 %)
0 diff
(100 %id)
D60869   .p 2653 to 2956 10 to 313       304/313
(97 %)
6 diff
(98.1 %id)
AI765891 Kidney .p 2654 to 2956 319 to 17   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 303/303
(100 %)
4 diff
(98.7 %id)
AI685784 Prostate .p 2663 to 2956 317 to 24   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 294/294
(100 %)
3 diff
(99.0 %id)
AI969251 lung, two pooled squamous cell carcinomas .p 2669 to 2956 314 to 27   AAA Possibly primed on the genome, locally A rich (22/24 A in genome downstream of last aligned base) 288/297
(96 %)
5 diff
(98.4 %id)
T40486 lung .p 2677 to 2926 250 to 1   fully sequenced,   250/250
(100 %)
5 diff
(98.0 %id)
AW582760   .p 2822 to 2930 109 to 1       109/109
(100 %)
0 diff
(100 %id)
DA704580   .q 1 to 466 2 to 467 exact tiling clone, capped   466/466
(100 %)
1 diff
(99.8 %id)
DB323913   .q 1805 to 2347 544 to 1   tiling clone,   544/544
(100 %)
6 diff
(98.9 %id)
DA595747 lung .r 1 to 559 2 to 560 exact tiling clone, capped   559/559
(100 %)
1 diff
(99.9 %id)
BM462766 melanotic melanoma, skin .r 105 to 913 158 to 982 exact tiling clone,   825/990
(83 %)
37 diff
(96.3 %id)
BP289319 lung .r 148 to 729 1 to 582 exact tiling clone,   582/582
(100 %)
4 diff
(99.4 %id)
CB126147 Liver .s 1 to 471 1 to 471 exact tiling clone,   471/471
(100 %)
1 diff
(99.8 %id)
DB307322 corpus callosum Gene RAB7L1, variant not shown              
DA280562 corpus callosum Gene RAB7L1, variant not shown       capped      
CN411796 embryonic stem cells, cell lines H1, H7, andH9 Gene RAB7L1, variant not shown              
DA536835 heart Gene RAB7L1, variant not shown       capped      
AV728771 hypothalamus Gene RAB7L1, variant not shown         Suspected internal deletion, this clone was ignored    
BE464327 Kidney Gene RAB7L1, variant not shown         Suspected internal deletion, this clone was ignored    
EB387689 eye, optic nerve Gene RAB7L1, variant not shown         Suspected internal deletion, this clone was ignored    
? Gene Summary Gene on genome mRNA:.a, .b, .c, .d, .e, .f, .g, .h, .i, .j, .k, .l, .m, .n, .o, .p, .q, .r, .s Alternative mRNAs features, proteins, introns, exons, sequences Expression Tissue Function, regulation, related genes DCI